RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 ORC3Q9UBD5 711 aaPredicted RBP20.24■□□□□ 0.83
COL7A1-205ENST00000465238 ESYT2A0FGR8 921 aa20.23■□□□□ 0.83
COL7A1-205ENST00000465238 SPDYE3A6NKU9 549 aa20.23■□□□□ 0.83
COL7A1-205ENST00000465238 KIF28PB7ZC32 967 aa20.23■□□□□ 0.83
COL7A1-205ENST00000465238 CA3P07451 260 aa20.23■□□□□ 0.83
COL7A1-205ENST00000465238 GNA11P29992 359 aa20.23■□□□□ 0.83
COL7A1-205ENST00000465238 UBE2SQ16763 222 aa20.23■□□□□ 0.83
COL7A1-205ENST00000465238 HSDL1Q3SXM5 330 aa20.23■□□□□ 0.83
COL7A1-205ENST00000465238 HERC6Q8IVU3 1022 aa20.23■□□□□ 0.83
COL7A1-205ENST00000465238 ATXN2LQ8WWM7 1075 aaKnown RBP20.23■□□□□ 0.83
COL7A1-205ENST00000465238 DHX38Q92620 1227 aaKnown RBP20.23■□□□□ 0.83
COL7A1-205ENST00000465238 VPS54Q9P1Q0 977 aa20.23■□□□□ 0.83
COL7A1-205ENST00000465238 THEGQ9P2T0 379 aa20.23■□□□□ 0.83
COL7A1-205ENST00000465238 STAM2O75886 525 aa20.22■□□□□ 0.83
COL7A1-205ENST00000465238 CKBP12277 381 aa20.22■□□□□ 0.83
COL7A1-205ENST00000465238 XBP1P17861 261 aa20.22■□□□□ 0.83
COL7A1-205ENST00000465238 UBA1P22314 1058 aaKnown RBP20.22■□□□□ 0.83
COL7A1-205ENST00000465238 KCNJ6P48051 423 aa20.22■□□□□ 0.83
COL7A1-205ENST00000465238 NLRP5P59047 1200 aa20.22■□□□□ 0.83
COL7A1-205ENST00000465238 PTK7Q13308 1070 aa20.22■□□□□ 0.83
COL7A1-205ENST00000465238 GNPTABQ3T906 1256 aa20.22■□□□□ 0.83
COL7A1-205ENST00000465238 NSUN7Q8NE18 718 aaKnown RBP20.22■□□□□ 0.83
COL7A1-205ENST00000465238 LLPHQ9BRT6 129 aaKnown RBP20.22■□□□□ 0.83
COL7A1-205ENST00000465238 ZMYND12Q9H0C1 365 aa20.22■□□□□ 0.83
COL7A1-205ENST00000465238 EHMT1Q9H9B1 1298 aa20.22■□□□□ 0.83
COL7A1-205ENST00000465238 MLXIPQ9HAP2 919 aa20.22■□□□□ 0.83
COL7A1-205ENST00000465238 PRDM6Q9NQX0 595 aa20.22■□□□□ 0.83
COL7A1-205ENST00000465238 DTNBO60941 627 aa20.21■□□□□ 0.83
COL7A1-205ENST00000465238 FOSP01100 380 aaPredicted RBP20.21■□□□□ 0.83
COL7A1-205ENST00000465238 CXCL10P02778 98 aa20.21■□□□□ 0.83
COL7A1-205ENST00000465238 SP2Q02086 613 aa20.21■□□□□ 0.83
COL7A1-205ENST00000465238 GPNMBQ14956 572 aa20.21■□□□□ 0.83
COL7A1-205ENST00000465238 CCDC85BQ15834 202 aaPredicted RBP20.21■□□□□ 0.83
COL7A1-205ENST00000465238 FAM177A1Q8N128 213 aaPredicted RBP20.21■□□□□ 0.83
COL7A1-205ENST00000465238 BICD2Q8TD16 824 aa20.21■□□□□ 0.83
COL7A1-205ENST00000465238 PCDHA6Q9UN73 950 aa20.21■□□□□ 0.83
COL7A1-205ENST00000465238 PCDHA8Q9Y5H6 950 aa20.21■□□□□ 0.83
COL7A1-205ENST00000465238 FRMPD4Q14CM0 1322 aa20.21■□□□□ 0.83
COL7A1-205ENST00000465238 NCOR1O75376 2440 aa20.2■□□□□ 0.82
COL7A1-205ENST00000465238 SORBS3O60504 671 aa20.2■□□□□ 0.82
COL7A1-205ENST00000465238 CD2BP2O95400 341 aaKnown RBP20.2■□□□□ 0.82
COL7A1-205ENST00000465238 ST3GAL1Q11201 340 aa20.2■□□□□ 0.82
COL7A1-205ENST00000465238 MCTP2Q6DN12 878 aa20.2■□□□□ 0.82
COL7A1-205ENST00000465238 CNKSR3Q6P9H4 555 aa20.2■□□□□ 0.82
COL7A1-205ENST00000465238 TMX3Q96JJ7 454 aa20.2■□□□□ 0.82
COL7A1-205ENST00000465238 AIFM3Q96NN9 605 aa20.2■□□□□ 0.82
COL7A1-205ENST00000465238 REV3LO60673 3130 aa20.2■□□□□ 0.82
COL7A1-205ENST00000465238 PTPRSQ13332 1948 aa20.19■□□□□ 0.82
COL7A1-205ENST00000465238 JAK2O60674 1132 aa20.19■□□□□ 0.82
COL7A1-205ENST00000465238 FDPSP14324 419 aaKnown RBP20.19■□□□□ 0.82
COL7A1-205ENST00000465238 ICAM3P32942 547 aa20.19■□□□□ 0.82
COL7A1-205ENST00000465238 WDR5P61964 334 aaKnown RBP20.19■□□□□ 0.82
COL7A1-205ENST00000465238 AP3B2Q13367 1082 aa20.19■□□□□ 0.82
COL7A1-205ENST00000465238 TRIM71Q2Q1W2 868 aaKnown RBP20.19■□□□□ 0.82
COL7A1-205ENST00000465238 ZFP91Q96JP5 570 aaPredicted RBP20.19■□□□□ 0.82
COL7A1-205ENST00000465238 INPP4AQ96PE3 977 aaPredicted RBP20.19■□□□□ 0.82
COL7A1-205ENST00000465238 C16orf70Q9BSU1 422 aa20.19■□□□□ 0.82
COL7A1-205ENST00000465238 TSPYL2Q9H2G4 693 aaPredicted RBP20.19■□□□□ 0.82
COL7A1-205ENST00000465238 PRRC2BQ5JSZ5 2229 aaKnown RBP20.19■□□□□ 0.82
COL7A1-205ENST00000465238 ABHD14A-ACY1A0A1B0GW23 586 aa20.18■□□□□ 0.82
COL7A1-205ENST00000465238 TLL1O43897 1013 aa20.18■□□□□ 0.82
COL7A1-205ENST00000465238 NBNO60934 754 aa20.18■□□□□ 0.82
COL7A1-205ENST00000465238 EFCAB14O75071 495 aa20.18■□□□□ 0.82
COL7A1-205ENST00000465238 POU3F3P20264 500 aaPredicted RBP20.18■□□□□ 0.82
COL7A1-205ENST00000465238 MRPS9P82933 396 aaKnown RBP20.18■□□□□ 0.82
COL7A1-205ENST00000465238 TAP1Q03518 808 aa20.18■□□□□ 0.82
COL7A1-205ENST00000465238 NEDD9Q14511 834 aa20.18■□□□□ 0.82
COL7A1-205ENST00000465238 JAKMIP3Q5VZ66 844 aa20.18■□□□□ 0.82
COL7A1-205ENST00000465238 XRRA1Q6P2D8 792 aa20.18■□□□□ 0.82
COL7A1-205ENST00000465238 REXO1Q8N1G1 1221 aaKnown RBP20.18■□□□□ 0.82
COL7A1-205ENST00000465238 ASB2Q96Q27 587 aa20.18■□□□□ 0.82
COL7A1-205ENST00000465238 TMEM260Q9NX78 707 aa20.18■□□□□ 0.82
COL7A1-205ENST00000465238 SPATA31C2B4DYI2 1134 aa20.17■□□□□ 0.82
COL7A1-205ENST00000465238 H3BRB1 525 aa20.17■□□□□ 0.82
COL7A1-205ENST00000465238 NOP56O00567 594 aaKnown RBP20.17■□□□□ 0.82
COL7A1-205ENST00000465238 FIBPO43427 364 aa20.17■□□□□ 0.82
COL7A1-205ENST00000465238 GTPBP6O43824 516 aaPredicted RBP20.17■□□□□ 0.82
COL7A1-205ENST00000465238 CLK2P49760 499 aaKnown RBP20.17■□□□□ 0.82
COL7A1-205ENST00000465238 MRPS5P82675 430 aaKnown RBP20.17■□□□□ 0.82
COL7A1-205ENST00000465238 HMGN5P82970 282 aaKnown RBP20.17■□□□□ 0.82
COL7A1-205ENST00000465238 ZNF200P98182 395 aaPredicted RBP20.17■□□□□ 0.82
COL7A1-205ENST00000465238 ZNF618Q5T7W0 954 aa20.17■□□□□ 0.82
COL7A1-205ENST00000465238 PCNX4Q63HM2 1172 aa20.17■□□□□ 0.82
COL7A1-205ENST00000465238 GALNT17Q6IS24 598 aa20.17■□□□□ 0.82
COL7A1-205ENST00000465238 METTL7BQ6UX53 244 aa20.17■□□□□ 0.82
COL7A1-205ENST00000465238 SERINC5Q86VE9 423 aa20.17■□□□□ 0.82
COL7A1-205ENST00000465238 TUT1Q9H6E5 874 aaKnown RBP20.17■□□□□ 0.82
COL7A1-205ENST00000465238 PCDHA4Q9UN74 947 aa20.17■□□□□ 0.82
COL7A1-205ENST00000465238 MUC3AQ02505 3323 aa20.17■□□□□ 0.82
COL7A1-205ENST00000465238 LGALS2P05162 132 aa20.16■□□□□ 0.82
COL7A1-205ENST00000465238 TRIM29Q14134 588 aa20.16■□□□□ 0.82
COL7A1-205ENST00000465238 IKBKEQ14164 716 aa20.16■□□□□ 0.82
COL7A1-205ENST00000465238 HIC1Q14526 733 aa20.16■□□□□ 0.82
COL7A1-205ENST00000465238 TRAF7Q6Q0C0 670 aa20.16■□□□□ 0.82
COL7A1-205ENST00000465238 MICALL1Q8N3F8 863 aa20.16■□□□□ 0.82
COL7A1-205ENST00000465238 FAM184AQ8NB25 1140 aa20.16■□□□□ 0.82
COL7A1-205ENST00000465238 WNT8BQ93098 351 aa20.16■□□□□ 0.82
COL7A1-205ENST00000465238 PGBD1Q96JS3 809 aa20.16■□□□□ 0.82
COL7A1-205ENST00000465238 ZBED2Q9BTP6 218 aa20.16■□□□□ 0.82
COL7A1-205ENST00000465238 ANO3Q9BYT9 981 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms