RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 TBC1D5Q92609 795 aa14.32□□□□□ -0.12
HDAC4-207ENST00000461113 RIC8AQ9NPQ8 531 aa14.32□□□□□ -0.12
HDAC4-207ENST00000461113 PDGFCQ9NRA1 345 aa14.32□□□□□ -0.12
HDAC4-207ENST00000461113 DDX49Q9Y6V7 483 aaKnown RBP14.32□□□□□ -0.12
HDAC4-207ENST00000461113 STK36Q9NRP7 1315 aa14.32□□□□□ -0.12
HDAC4-207ENST00000461113 PARP14Q460N5 1801 aa14.31□□□□□ -0.12
HDAC4-207ENST00000461113 PPFIA3O75145 1194 aa14.31□□□□□ -0.12
HDAC4-207ENST00000461113 BAIAP3O94812 1187 aa14.31□□□□□ -0.12
HDAC4-207ENST00000461113 PTPN5P54829 565 aa14.31□□□□□ -0.12
HDAC4-207ENST00000461113 ERVK-21P61565 698 aa14.31□□□□□ -0.12
HDAC4-207ENST00000461113 ZP2Q05996 745 aa14.31□□□□□ -0.12
HDAC4-207ENST00000461113 STXBP2Q15833 593 aa14.31□□□□□ -0.12
HDAC4-207ENST00000461113 GALNT17Q6IS24 598 aa14.31□□□□□ -0.12
HDAC4-207ENST00000461113 NEK9Q8TD19 979 aa14.31□□□□□ -0.12
HDAC4-207ENST00000461113 TAAR1Q96RJ0 339 aa14.31□□□□□ -0.12
HDAC4-207ENST00000461113 TGS1Q96RS0 853 aaKnown RBP14.31□□□□□ -0.12
HDAC4-207ENST00000461113 BRMS1Q9HCU9 246 aa14.31□□□□□ -0.12
HDAC4-207ENST00000461113 VTA1Q9NP79 307 aa14.31□□□□□ -0.12
HDAC4-207ENST00000461113 COL11A1P12107 1806 aaPredicted RBP14.31□□□□□ -0.12
HDAC4-207ENST00000461113 ESYT2A0FGR8 921 aa14.3□□□□□ -0.12
HDAC4-207ENST00000461113 LARGE1O95461 756 aa14.3□□□□□ -0.12
HDAC4-207ENST00000461113 MYCLP12524 364 aaPredicted RBP14.3□□□□□ -0.12
HDAC4-207ENST00000461113 EIF2AK2P19525 551 aaKnown RBP14.3□□□□□ -0.12
HDAC4-207ENST00000461113 CCND2P30279 289 aa14.3□□□□□ -0.12
HDAC4-207ENST00000461113 WDR5P61964 334 aaKnown RBP14.3□□□□□ -0.12
HDAC4-207ENST00000461113 PKN1Q16512 942 aa14.3□□□□□ -0.12
HDAC4-207ENST00000461113 FAM47CQ5HY64 1035 aa14.3□□□□□ -0.12
HDAC4-207ENST00000461113 IER5LQ5T953 404 aa14.3□□□□□ -0.12
HDAC4-207ENST00000461113 IQSEC1Q6DN90 963 aa14.3□□□□□ -0.12
HDAC4-207ENST00000461113 USP17L6PQ6QN14 398 aa14.3□□□□□ -0.12
HDAC4-207ENST00000461113 EEPD1Q7L9B9 569 aa14.3□□□□□ -0.12
HDAC4-207ENST00000461113 PPP1R13LQ8WUF5 828 aa14.3□□□□□ -0.12
HDAC4-207ENST00000461113 ALG1Q9BT22 464 aa14.3□□□□□ -0.12
HDAC4-207ENST00000461113 PXMP2Q9NR77 195 aa14.3□□□□□ -0.12
HDAC4-207ENST00000461113 VPS54Q9P1Q0 977 aa14.3□□□□□ -0.12
HDAC4-207ENST00000461113 Q9Y3F1 56 aa14.3□□□□□ -0.12
HDAC4-207ENST00000461113 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.3□□□□□ -0.12
HDAC4-207ENST00000461113 USP34Q70CQ2 3546 aa14.3□□□□□ -0.12
HDAC4-207ENST00000461113 BRWD1Q9NSI6 2320 aa14.3□□□□□ -0.12
HDAC4-207ENST00000461113 BAZ2BQ9UIF8 2168 aaKnown RBP14.29□□□□□ -0.12
HDAC4-207ENST00000461113 C19orf67A6NJJ6 358 aa14.29□□□□□ -0.12
HDAC4-207ENST00000461113 PITPNM1O00562 1244 aa14.29□□□□□ -0.12
HDAC4-207ENST00000461113 OPLAHO14841 1288 aa14.29□□□□□ -0.12
HDAC4-207ENST00000461113 EIF3JO75822 258 aaKnown RBP14.29□□□□□ -0.12
HDAC4-207ENST00000461113 NR3C2P08235 984 aa14.29□□□□□ -0.12
HDAC4-207ENST00000461113 DEFB103AP81534 67 aa14.29□□□□□ -0.12
HDAC4-207ENST00000461113 AP3B2Q13367 1082 aa14.29□□□□□ -0.12
HDAC4-207ENST00000461113 SAFBQ15424 915 aaKnown RBP eCLIP14.29□□□□□ -0.12
HDAC4-207ENST00000461113 TAPT1Q6NXT6 567 aa14.29□□□□□ -0.12
HDAC4-207ENST00000461113 XRRA1Q6P2D8 792 aa14.29□□□□□ -0.12
HDAC4-207ENST00000461113 HSCBQ8IWL3 235 aa14.29□□□□□ -0.12
HDAC4-207ENST00000461113 FBXO16Q8IX29 292 aaPredicted RBP14.29□□□□□ -0.12
HDAC4-207ENST00000461113 REXO1Q8N1G1 1221 aaKnown RBP14.29□□□□□ -0.12
HDAC4-207ENST00000461113 NSUN7Q8NE18 718 aaKnown RBP14.29□□□□□ -0.12
HDAC4-207ENST00000461113 TMX3Q96JJ7 454 aa14.29□□□□□ -0.12
HDAC4-207ENST00000461113 PURBQ96QR8 312 aaKnown RBP14.29□□□□□ -0.12
HDAC4-207ENST00000461113 ZMYND12Q9H0C1 365 aa14.29□□□□□ -0.12
HDAC4-207ENST00000461113 POLR3EQ9NVU0 708 aa14.29□□□□□ -0.12
HDAC4-207ENST00000461113 LINC01553A4QN01 128 aa14.28□□□□□ -0.12
HDAC4-207ENST00000461113 MEIS2O14770 477 aa14.28□□□□□ -0.12
HDAC4-207ENST00000461113 GFRA3O60609 400 aa14.28□□□□□ -0.12
HDAC4-207ENST00000461113 STAM2O75886 525 aa14.28□□□□□ -0.12
HDAC4-207ENST00000461113 MYL3P08590 195 aa14.28□□□□□ -0.12
HDAC4-207ENST00000461113 IRS1P35568 1242 aa14.28□□□□□ -0.12
HDAC4-207ENST00000461113 COL4A4P53420 1690 aaPredicted RBP14.28□□□□□ -0.12
HDAC4-207ENST00000461113 PURAQ00577 322 aaKnown RBP14.28□□□□□ -0.12
HDAC4-207ENST00000461113 UBE2SQ16763 222 aa14.28□□□□□ -0.12
HDAC4-207ENST00000461113 NBPF20Q3BBV1 942 aa14.28□□□□□ -0.12
HDAC4-207ENST00000461113 GNPTABQ3T906 1256 aa14.28□□□□□ -0.12
HDAC4-207ENST00000461113 EP400NLQ6ZTU2 488 aa14.28□□□□□ -0.12
HDAC4-207ENST00000461113 ADHFE1Q8IWW8 467 aa14.28□□□□□ -0.12
HDAC4-207ENST00000461113 MORC4Q8TE76 937 aa14.28□□□□□ -0.12
HDAC4-207ENST00000461113 RAD9AQ99638 391 aa14.28□□□□□ -0.12
HDAC4-207ENST00000461113 PDCD2LQ9BRP1 358 aa14.28□□□□□ -0.12
HDAC4-207ENST00000461113 COL20A1Q9P218 1284 aa14.28□□□□□ -0.12
HDAC4-207ENST00000461113 PRKAG3Q9UGI9 489 aa14.28□□□□□ -0.12
HDAC4-207ENST00000461113 PCDHA6Q9UN73 950 aa14.28□□□□□ -0.12
HDAC4-207ENST00000461113 PCDHA8Q9Y5H6 950 aa14.28□□□□□ -0.12
HDAC4-207ENST00000461113 CTDNEP1O95476 244 aa14.27□□□□□ -0.13
HDAC4-207ENST00000461113 HSP90AA1P07900 732 aaKnown RBP14.27□□□□□ -0.13
HDAC4-207ENST00000461113 EDNRBP24530 442 aa14.27□□□□□ -0.13
HDAC4-207ENST00000461113 ZNF76P36508 570 aa14.27□□□□□ -0.13
HDAC4-207ENST00000461113 BFSP2Q13515 415 aa14.27□□□□□ -0.13
HDAC4-207ENST00000461113 PGM5Q15124 567 aa14.27□□□□□ -0.13
HDAC4-207ENST00000461113 KCNV1Q6PIU1 500 aa14.27□□□□□ -0.13
HDAC4-207ENST00000461113 NLRX1Q86UT6 975 aa14.27□□□□□ -0.13
HDAC4-207ENST00000461113 FBXO22Q8NEZ5 403 aa14.27□□□□□ -0.13
HDAC4-207ENST00000461113 SCFD2Q8WU76 684 aa14.27□□□□□ -0.13
HDAC4-207ENST00000461113 MUTYHQ9UIF7 546 aa14.27□□□□□ -0.13
HDAC4-207ENST00000461113 PCDHA4Q9UN74 947 aa14.27□□□□□ -0.13
HDAC4-207ENST00000461113 SMC3Q9UQE7 1217 aa14.27□□□□□ -0.13
HDAC4-207ENST00000461113 FAM50BQ9Y247 325 aa14.27□□□□□ -0.13
HDAC4-207ENST00000461113 JAK2O60674 1132 aa14.26□□□□□ -0.13
HDAC4-207ENST00000461113 GJB5O95377 273 aa14.26□□□□□ -0.13
HDAC4-207ENST00000461113 TCF15Q12870 199 aa14.26□□□□□ -0.13
HDAC4-207ENST00000461113 BRDTQ58F21 947 aaPredicted RBP14.26□□□□□ -0.13
HDAC4-207ENST00000461113 JAKMIP3Q5VZ66 844 aa14.26□□□□□ -0.13
HDAC4-207ENST00000461113 TYW1BQ6NUM6 668 aa14.26□□□□□ -0.13
HDAC4-207ENST00000461113 FAM117BQ6P1L5 589 aa14.26□□□□□ -0.13
HDAC4-207ENST00000461113 SEPT14Q6ZU15 432 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms