RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, human

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1-210	ENST00000449058	TCP1	P17987	556 aa	Known RBP	18.69	■□□□□ 0.58
TOM1-210	ENST00000449058	SFMBT2	Q5VUG0	894 aa		18.69	■□□□□ 0.58
TOM1-210	ENST00000449058	CCNI2	Q6ZMN8	369 aa	Predicted RBP	18.69	■□□□□ 0.58
TOM1-210	ENST00000449058	TMEM179	Q6ZVK1	233 aa		18.69	■□□□□ 0.58
TOM1-210	ENST00000449058	KIAA0825	Q8IV33	1275 aa		18.69	■□□□□ 0.58
TOM1-210	ENST00000449058	RNF10	Q8N5U6	811 aa	Known RBP	18.69	■□□□□ 0.58
TOM1-210	ENST00000449058	LENG9	Q96B70	501 aa		18.69	■□□□□ 0.58
TOM1-210	ENST00000449058	OSBPL9	Q96SU4	736 aa		18.69	■□□□□ 0.58
TOM1-210	ENST00000449058	LSM14B	Q9BX40	385 aa	Known RBP	18.69	■□□□□ 0.58
TOM1-210	ENST00000449058	AMN	Q9BXJ7	453 aa		18.69	■□□□□ 0.58
TOM1-210	ENST00000449058	TMX4	Q9H1E5	349 aa	Predicted RBP	18.69	■□□□□ 0.58
TOM1-210	ENST00000449058	NLRC4	Q9NPP4	1024 aa		18.69	■□□□□ 0.58
TOM1-210	ENST00000449058	POTEF	A5A3E0	1075 aa		18.68	■□□□□ 0.58
TOM1-210	ENST00000449058	POTEI	P0CG38	1075 aa		18.68	■□□□□ 0.58
TOM1-210	ENST00000449058	MMP14	P50281	582 aa		18.68	■□□□□ 0.58
TOM1-210	ENST00000449058	ICA1	Q05084	483 aa		18.68	■□□□□ 0.58
TOM1-210	ENST00000449058	SLC9C1	Q4G0N8	1177 aa		18.68	■□□□□ 0.58
TOM1-210	ENST00000449058	DACT2	Q5SW24	774 aa		18.68	■□□□□ 0.58
TOM1-210	ENST00000449058	STRIP1	Q5VSL9	837 aa		18.68	■□□□□ 0.58
TOM1-210	ENST00000449058	POTEG	Q6S5H5	508 aa		18.68	■□□□□ 0.58
TOM1-210	ENST00000449058	POTEE	Q6S8J3	1075 aa		18.68	■□□□□ 0.58
TOM1-210	ENST00000449058	CATSPER3	Q86XQ3	398 aa		18.68	■□□□□ 0.58
TOM1-210	ENST00000449058	COL23A1	Q86Y22	540 aa	Predicted RBP	18.68	■□□□□ 0.58
TOM1-210	ENST00000449058	GPIHBP1	Q8IV16	184 aa		18.68	■□□□□ 0.58
TOM1-210	ENST00000449058	GMCL1	Q96IK5	515 aa		18.68	■□□□□ 0.58
TOM1-210	ENST00000449058	FAN1	Q9Y2M0	1017 aa		18.68	■□□□□ 0.58
TOM1-210	ENST00000449058	HYOU1	Q9Y4L1	999 aa		18.68	■□□□□ 0.58
TOM1-210	ENST00000449058	KIF13B	Q9NQT8	1826 aa		18.68	■□□□□ 0.58
TOM1-210	ENST00000449058		F5H6K3	240 aa		18.68	■□□□□ 0.58
TOM1-210	ENST00000449058	KLRC3	Q07444	240 aa		18.68	■□□□□ 0.58
TOM1-210	ENST00000449058	KRT27	Q7Z3Y8	459 aa		18.68	■□□□□ 0.58
TOM1-210	ENST00000449058	DRC1	Q96MC2	740 aa		18.68	■□□□□ 0.58
TOM1-210	ENST00000449058	SPATA31C1	P0DKV0	1188 aa		18.67	■□□□□ 0.58
TOM1-210	ENST00000449058	RPA1	P27694	616 aa		18.67	■□□□□ 0.58
TOM1-210	ENST00000449058	SREBF1	P36956	1147 aa		18.67	■□□□□ 0.58
TOM1-210	ENST00000449058	HNRNPH2	P55795	449 aa	Known RBP	18.67	■□□□□ 0.58
TOM1-210	ENST00000449058	POLR2F	P61218	127 aa	Known RBP	18.67	■□□□□ 0.58
TOM1-210	ENST00000449058	RASSF7	Q02833	373 aa		18.67	■□□□□ 0.58
TOM1-210	ENST00000449058	ADAM9	Q13443	819 aa		18.67	■□□□□ 0.58
TOM1-210	ENST00000449058	GIT2	Q14161	759 aa		18.67	■□□□□ 0.58
TOM1-210	ENST00000449058	PRR16	Q569H4	304 aa		18.67	■□□□□ 0.58
TOM1-210	ENST00000449058	HSP90B2P	Q58FF3	399 aa		18.67	■□□□□ 0.58
TOM1-210	ENST00000449058	RUBCN	Q92622	972 aa		18.67	■□□□□ 0.58
TOM1-210	ENST00000449058	HPCAL4	Q9UM19	191 aa		18.67	■□□□□ 0.58
TOM1-210	ENST00000449058	ZC3H4	Q9UPT8	1303 aa	Known RBP	18.67	■□□□□ 0.58
TOM1-210	ENST00000449058	FOS	P01100	380 aa	Predicted RBP	18.67	■□□□□ 0.58
TOM1-210	ENST00000449058	KRT18	P05783	430 aa	Known RBP	18.67	■□□□□ 0.58
TOM1-210	ENST00000449058	RAD51AP2	Q09MP3	1159 aa		18.67	■□□□□ 0.58
TOM1-210	ENST00000449058	TDRD12	Q587J7	1177 aa	Known RBP	18.67	■□□□□ 0.58
TOM1-210	ENST00000449058	ERMN	Q8TAM6	284 aa		18.67	■□□□□ 0.58
TOM1-210	ENST00000449058	CCDC102A	Q96A19	550 aa		18.67	■□□□□ 0.58
TOM1-210	ENST00000449058	ZMYND10	O75800	440 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	NDUFB10	O96000	172 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	MYBL2	P10244	700 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	PSMC6	P62333	389 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	NFRKB	Q6P4R8	1299 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	EPM2AIP1	Q7L775	607 aa	Predicted RBP	18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	FBXO11	Q86XK2	927 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	SYT2	Q8N9I0	419 aa	Predicted RBP	18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	SPATA4	Q8NEY3	305 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	AKT1S1	Q96B36	256 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	NOX5	Q96PH1	765 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	TLR10	Q9BXR5	811 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	GAN	Q9H2C0	597 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	QTRT2	Q9H974	415 aa	Known RBP	18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	TRAF3IP3	Q9Y228	551 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	FAM86B1	E9PN63	330 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	CETN3	O15182	167 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	FAM86B2	P0C5J1	330 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	CIITA	P33076	1130 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	CASP5	P51878	434 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	SNAP25	P60880	206 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	KLHDC7A	Q5VTJ3	777 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	CCDC70	Q6NSX1	233 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	ANKRD13C	Q8N6S4	541 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	FAM20A	Q96MK3	541 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	CRACR2A	Q9BSW2	395 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	TRIM34	Q9BYJ4	488 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	AIPL1	Q9NZN9	384 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	STK24	Q9Y6E0	443 aa		18.66	■□□□□ 0.58
TOM1-210	ENST00000449058	TNNT3	P45378	269 aa	Predicted RBP	18.65	■□□□□ 0.58
TOM1-210	ENST00000449058	LMAN1	P49257	510 aa		18.65	■□□□□ 0.58
TOM1-210	ENST00000449058	ABCB5	Q2M3G0	1257 aa		18.65	■□□□□ 0.58
TOM1-210	ENST00000449058	MUM1L1	Q5H9M0	696 aa		18.65	■□□□□ 0.58
TOM1-210	ENST00000449058	SYDE2	Q5VT97	1194 aa		18.65	■□□□□ 0.58
TOM1-210	ENST00000449058	SERPINA10	Q9UK55	444 aa		18.65	■□□□□ 0.58
TOM1-210	ENST00000449058	DNM3	Q9UQ16	869 aa		18.65	■□□□□ 0.58
TOM1-210	ENST00000449058	SLX4	Q8IY92	1834 aa		18.65	■□□□□ 0.58
TOM1-210	ENST00000449058	ATRNL1	Q5VV63	1379 aa		18.65	■□□□□ 0.58
TOM1-210	ENST00000449058	OPLAH	O14841	1288 aa		18.64	■□□□□ 0.58
TOM1-210	ENST00000449058	SYF2	O95926	243 aa	Known RBP	18.64	■□□□□ 0.58
TOM1-210	ENST00000449058	MMP10	P09238	476 aa		18.64	■□□□□ 0.58
TOM1-210	ENST00000449058	RBM5	P52756	815 aa	Known RBP eCLIP	18.64	■□□□□ 0.58
TOM1-210	ENST00000449058	APBA1	Q02410	837 aa		18.64	■□□□□ 0.58
TOM1-210	ENST00000449058	BTNL9	Q6UXG8	535 aa		18.64	■□□□□ 0.58
TOM1-210	ENST00000449058	AEN	Q8WTP8	325 aa	Known RBP	18.64	■□□□□ 0.58
TOM1-210	ENST00000449058	TSKS	Q9UJT2	592 aa		18.64	■□□□□ 0.58
TOM1-210	ENST00000449058	SPDYE3	A6NKU9	549 aa		18.64	■□□□□ 0.57
TOM1-210	ENST00000449058	NCK2	O43639	380 aa		18.64	■□□□□ 0.57
TOM1-210	ENST00000449058	ECE2	O60344	883 aa		18.64	■□□□□ 0.57

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms