RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 NLRC4Q9NPP4 1024 aa17.68■□□□□ 0.42
SHQ1-202ENST00000444040 SERPINA10Q9UK55 444 aa17.68■□□□□ 0.42
SHQ1-202ENST00000444040 N4BP1O75113 896 aaKnown RBP17.68■□□□□ 0.42
SHQ1-202ENST00000444040 MCM3P25205 808 aa17.68■□□□□ 0.42
SHQ1-202ENST00000444040 PSMC6P62333 389 aa17.68■□□□□ 0.42
SHQ1-202ENST00000444040 NUCKS1Q9H1E3 243 aaKnown RBP17.68■□□□□ 0.42
SHQ1-202ENST00000444040 SCN9AQ15858 1988 aa17.68■□□□□ 0.42
SHQ1-202ENST00000444040 RPA1P27694 616 aa17.67■□□□□ 0.42
SHQ1-202ENST00000444040 SREBF1P36956 1147 aa17.67■□□□□ 0.42
SHQ1-202ENST00000444040 GIT2Q14161 759 aa17.67■□□□□ 0.42
SHQ1-202ENST00000444040 ABCB5Q2M3G0 1257 aa17.67■□□□□ 0.42
SHQ1-202ENST00000444040 EDRF1Q3B7T1 1238 aa17.67■□□□□ 0.42
SHQ1-202ENST00000444040 FBXO11Q86XK2 927 aa17.67■□□□□ 0.42
SHQ1-202ENST00000444040 CAGE1Q8TC20 777 aa17.67■□□□□ 0.42
SHQ1-202ENST00000444040 TRIM34Q9BYJ4 488 aa17.67■□□□□ 0.42
SHQ1-202ENST00000444040 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.67■□□□□ 0.42
SHQ1-202ENST00000444040 ZNF646O15015 1829 aaPredicted RBP17.67■□□□□ 0.42
SHQ1-202ENST00000444040 OPLAHO14841 1288 aa17.67■□□□□ 0.42
SHQ1-202ENST00000444040 PPP4R3CPQ6ZMV5 832 aa17.67■□□□□ 0.42
SHQ1-202ENST00000444040 COG1Q8WTW3 980 aa17.67■□□□□ 0.42
SHQ1-202ENST00000444040 LSM14BQ9BX40 385 aaKnown RBP17.67■□□□□ 0.42
SHQ1-202ENST00000444040 CIITAP33076 1130 aa17.67■□□□□ 0.42
SHQ1-202ENST00000444040 CASP5P51878 434 aa17.67■□□□□ 0.42
SHQ1-202ENST00000444040 ITIH3Q06033 890 aa17.67■□□□□ 0.42
SHQ1-202ENST00000444040 ADAM9Q13443 819 aa17.67■□□□□ 0.42
SHQ1-202ENST00000444040 USH1GQ495M9 461 aa17.67■□□□□ 0.42
SHQ1-202ENST00000444040 SYDE2Q5VT97 1194 aa17.67■□□□□ 0.42
SHQ1-202ENST00000444040 SYT2Q8N9I0 419 aaPredicted RBP17.67■□□□□ 0.42
SHQ1-202ENST00000444040 EXOC4Q96A65 974 aa17.67■□□□□ 0.42
SHQ1-202ENST00000444040 FAM184BQ9ULE4 1060 aa17.67■□□□□ 0.42
SHQ1-202ENST00000444040 ATRNL1Q5VV63 1379 aa17.66■□□□□ 0.42
SHQ1-202ENST00000444040 CCDC66A2RUB6 948 aa17.66■□□□□ 0.42
SHQ1-202ENST00000444040 FOSP01100 380 aaPredicted RBP17.66■□□□□ 0.42
SHQ1-202ENST00000444040 APBA1Q02410 837 aa17.66■□□□□ 0.42
SHQ1-202ENST00000444040 SLC9C1Q4G0N8 1177 aa17.66■□□□□ 0.42
SHQ1-202ENST00000444040 SFMBT2Q5VUG0 894 aa17.66■□□□□ 0.42
SHQ1-202ENST00000444040 BTNL9Q6UXG8 535 aa17.66■□□□□ 0.42
SHQ1-202ENST00000444040 VIPAS39Q9H9C1 493 aa17.66■□□□□ 0.42
SHQ1-202ENST00000444040 PSD3Q9NYI0 1048 aa17.66■□□□□ 0.42
SHQ1-202ENST00000444040 PLSCR1O15162 318 aa17.66■□□□□ 0.42
SHQ1-202ENST00000444040 SERPING1P05155 500 aa17.66■□□□□ 0.42
SHQ1-202ENST00000444040 KRT18P05783 430 aaKnown RBP17.66■□□□□ 0.42
SHQ1-202ENST00000444040 POLR2FP61218 127 aaKnown RBP17.66■□□□□ 0.42
SHQ1-202ENST00000444040 RASSF7Q02833 373 aa17.66■□□□□ 0.42
SHQ1-202ENST00000444040 C2orf54Q08AI8 447 aa17.66■□□□□ 0.42
SHQ1-202ENST00000444040 RRP1BQ14684 758 aaKnown RBP17.66■□□□□ 0.42
SHQ1-202ENST00000444040 MMGT1Q8N4V1 131 aa17.66■□□□□ 0.42
SHQ1-202ENST00000444040 ERMNQ8TAM6 284 aa17.66■□□□□ 0.42
SHQ1-202ENST00000444040 DRC1Q96MC2 740 aa17.66■□□□□ 0.42
SHQ1-202ENST00000444040 FAM20AQ96MK3 541 aa17.66■□□□□ 0.42
SHQ1-202ENST00000444040 ALS2CR12Q96Q35 445 aa17.66■□□□□ 0.42
SHQ1-202ENST00000444040 OSBPL9Q96SU4 736 aa17.66■□□□□ 0.42
SHQ1-202ENST00000444040 CRACR2AQ9BSW2 395 aa17.66■□□□□ 0.42
SHQ1-202ENST00000444040 SPDYE3A6NKU9 549 aa17.65■□□□□ 0.42
SHQ1-202ENST00000444040 MEIS1O00470 390 aa17.65■□□□□ 0.42
SHQ1-202ENST00000444040 TAL1P17542 331 aaPredicted RBP17.65■□□□□ 0.42
SHQ1-202ENST00000444040 PABPC4Q13310 644 aaKnown RBP eCLIP17.65■□□□□ 0.42
SHQ1-202ENST00000444040 TDRD12Q587J7 1177 aaKnown RBP17.65■□□□□ 0.42
SHQ1-202ENST00000444040 IQCEQ6IPM2 695 aa17.65■□□□□ 0.42
SHQ1-202ENST00000444040 ANKRD13CQ8N6S4 541 aa17.65■□□□□ 0.42
SHQ1-202ENST00000444040 TDRD3Q9H7E2 651 aaKnown RBP17.65■□□□□ 0.42
SHQ1-202ENST00000444040 DNM3Q9UQ16 869 aa17.65■□□□□ 0.42
SHQ1-202ENST00000444040 TRAF3IP3Q9Y228 551 aa17.65■□□□□ 0.42
SHQ1-202ENST00000444040 MSH4O15457 936 aa17.65■□□□□ 0.42
SHQ1-202ENST00000444040 BMP3P12645 472 aa17.65■□□□□ 0.42
SHQ1-202ENST00000444040 HOXD13P35453 343 aa17.65■□□□□ 0.42
SHQ1-202ENST00000444040 EPM2AIP1Q7L775 607 aaPredicted RBP17.65■□□□□ 0.42
SHQ1-202ENST00000444040 RNF10Q8N5U6 811 aaKnown RBP17.65■□□□□ 0.42
SHQ1-202ENST00000444040 REEP2Q9BRK0 252 aa17.65■□□□□ 0.42
SHQ1-202ENST00000444040 ZHX3Q9H4I2 956 aa17.65■□□□□ 0.42
SHQ1-202ENST00000444040 VAV3Q9UKW4 847 aa17.65■□□□□ 0.42
SHQ1-202ENST00000444040 A0A1W2PRG0 241 aa17.64■□□□□ 0.41
SHQ1-202ENST00000444040 CETN3O15182 167 aa17.64■□□□□ 0.41
SHQ1-202ENST00000444040 ZMYND10O75800 440 aa17.64■□□□□ 0.41
SHQ1-202ENST00000444040 GH2P01242 217 aa17.64■□□□□ 0.41
SHQ1-202ENST00000444040 MYBL2P10244 700 aa17.64■□□□□ 0.41
SHQ1-202ENST00000444040 TCP1P17987 556 aaKnown RBP17.64■□□□□ 0.41
SHQ1-202ENST00000444040 MAP9Q49MG5 647 aa17.64■□□□□ 0.41
SHQ1-202ENST00000444040 NFRKBQ6P4R8 1299 aa17.64■□□□□ 0.41
SHQ1-202ENST00000444040 CCNI2Q6ZMN8 369 aaPredicted RBP17.64■□□□□ 0.41
SHQ1-202ENST00000444040 ZBTB9Q96C00 473 aa17.64■□□□□ 0.41
SHQ1-202ENST00000444040 GANQ9H2C0 597 aa17.64■□□□□ 0.41
SHQ1-202ENST00000444040 VPS18Q9P253 973 aa17.64■□□□□ 0.41
SHQ1-202ENST00000444040 HYOU1Q9Y4L1 999 aa17.64■□□□□ 0.41
SHQ1-202ENST00000444040 ENTPD3O75355 529 aa17.64■□□□□ 0.41
SHQ1-202ENST00000444040 NR2F2P24468 414 aa17.64■□□□□ 0.41
SHQ1-202ENST00000444040 KCNH2Q12809 1159 aa17.64■□□□□ 0.41
SHQ1-202ENST00000444040 KLHDC7AQ5VTJ3 777 aa17.64■□□□□ 0.41
SHQ1-202ENST00000444040 MSL1Q68DK7 614 aa17.64■□□□□ 0.41
SHQ1-202ENST00000444040 DPY19L2P1Q6NXN4 242 aa17.64■□□□□ 0.41
SHQ1-202ENST00000444040 FLAD1Q8NFF5 587 aa17.64■□□□□ 0.41
SHQ1-202ENST00000444040 TLR10Q9BXR5 811 aa17.64■□□□□ 0.41
SHQ1-202ENST00000444040 AIPL1Q9NZN9 384 aa17.64■□□□□ 0.41
SHQ1-202ENST00000444040 IKQ13123 557 aaPredicted RBP17.63■□□□□ 0.41
SHQ1-202ENST00000444040 KNOP1Q1ED39 458 aaKnown RBP17.63■□□□□ 0.41
SHQ1-202ENST00000444040 STYK1Q6J9G0 422 aa17.63■□□□□ 0.41
SHQ1-202ENST00000444040 SFR1Q86XK3 245 aa17.63■□□□□ 0.41
SHQ1-202ENST00000444040 TXLNBQ8N3L3 684 aa17.63■□□□□ 0.41
SHQ1-202ENST00000444040 SPATA4Q8NEY3 305 aa17.63■□□□□ 0.41
SHQ1-202ENST00000444040 CYP2W1Q8TAV3 490 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms