RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 OTOP1Q7RTM1 612 aa9.02□□□□□ -0.97
CCDC39-201ENST00000442201 ANKRD23Q86SG2 305 aa9.02□□□□□ -0.97
CCDC39-201ENST00000442201 LRRC15Q8TF66 581 aa9.02□□□□□ -0.97
CCDC39-201ENST00000442201 BPIFA3Q9BQP9 254 aa9.02□□□□□ -0.97
CCDC39-201ENST00000442201 TEKT3Q9BXF9 490 aa9.02□□□□□ -0.97
CCDC39-201ENST00000442201 RASSF4Q9H2L5 321 aa9.02□□□□□ -0.97
CCDC39-201ENST00000442201 TXNRD2Q9NNW7 524 aa9.02□□□□□ -0.97
CCDC39-201ENST00000442201 BLOC1S4Q9NUP1 217 aa9.02□□□□□ -0.97
CCDC39-201ENST00000442201 TESPA1A2RU30 521 aaPredicted RBP9.02□□□□□ -0.97
CCDC39-201ENST00000442201 CYP2C8P10632 490 aa9.02□□□□□ -0.97
CCDC39-201ENST00000442201 RPA1P27694 616 aa9.02□□□□□ -0.97
CCDC39-201ENST00000442201 SEMA3FQ13275 785 aa9.02□□□□□ -0.97
CCDC39-201ENST00000442201 PPP2R5CQ13362 524 aa9.02□□□□□ -0.97
CCDC39-201ENST00000442201 DHX8Q14562 1220 aaKnown RBP9.02□□□□□ -0.97
CCDC39-201ENST00000442201 DNERQ8NFT8 737 aa9.02□□□□□ -0.97
CCDC39-201ENST00000442201 RAD54LQ92698 747 aa9.02□□□□□ -0.97
CCDC39-201ENST00000442201 LRRC27Q9C0I9 530 aa9.02□□□□□ -0.97
CCDC39-201ENST00000442201 GPBP1L1Q9HC44 474 aaPredicted RBP9.02□□□□□ -0.97
CCDC39-201ENST00000442201 KIAA1024Q9UPX6 916 aa9.02□□□□□ -0.97
CCDC39-201ENST00000442201 POTEB3A0JP26 581 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 CCDC189A1A4V9 331 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 TTC36A6NLP5 189 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 POTEB2H3BUK9 544 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 RPN1P04843 607 aaKnown RBP9.01□□□□□ -0.97
CCDC39-201ENST00000442201 BMP6P22004 513 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 GSCP56915 257 aaPredicted RBP9.01□□□□□ -0.97
CCDC39-201ENST00000442201 POTEBQ6S5H4 581 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 NLRX1Q86UT6 975 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 ZNF592Q92610 1267 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 CCDC47Q96A33 483 aaKnown RBP9.01□□□□□ -0.97
CCDC39-201ENST00000442201 IWS1Q96ST2 819 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 MROH8Q9H579 483 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.01□□□□□ -0.97
CCDC39-201ENST00000442201 MAFGO15525 162 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 CHMP2AO43633 222 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 MED24O75448 989 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 STAM2O75886 525 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 ZNF157P51786 506 aaPredicted RBP9.01□□□□□ -0.97
CCDC39-201ENST00000442201 ERVK-9P63128 1117 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 ERVK-24P63145 666 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 PLCB2Q00722 1185 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 MCM6Q14566 821 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 ECM1Q16610 540 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 Q3C1V9 767 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 KCNK18Q7Z418 384 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 CATSPER3Q86XQ3 398 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 AOPEPQ8N6M6 819 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 GPRASP2Q96D09 838 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 EIF2AK1Q9BQI3 630 aaKnown RBP9.01□□□□□ -0.97
CCDC39-201ENST00000442201 TRIM9Q9C026 710 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 AGO4Q9HCK5 861 aaKnown RBP9.01□□□□□ -0.97
CCDC39-201ENST00000442201 TBC1D22BQ9NU19 505 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 PKD2L1Q9P0L9 805 aa9.01□□□□□ -0.97
CCDC39-201ENST00000442201 ADD3Q9UEY8 706 aaKnown RBP9.01□□□□□ -0.97
CCDC39-201ENST00000442201 EML1O00423 815 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 GCLCP48506 637 aaPredicted RBP9□□□□□ -0.97
CCDC39-201ENST00000442201 CCNA1P78396 465 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 KCTD2Q14681 263 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 NOLC1Q14978 699 aaKnown RBP eCLIP9□□□□□ -0.97
CCDC39-201ENST00000442201 GNPTABQ3T906 1256 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 WDR78Q5VTH9 848 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 KCTD17Q8N5Z5 321 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 SHCBP1Q8NEM2 672 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 RNF217Q8TC41 542 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 INPP4AQ96PE3 977 aaPredicted RBP9□□□□□ -0.97
CCDC39-201ENST00000442201 C7orf25Q9BPX7 421 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 POLR3CQ9BUI4 534 aaPredicted RBP9□□□□□ -0.97
CCDC39-201ENST00000442201 SMTNL1A8MU46 457 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 HNRNPH2P55795 449 aaKnown RBP9□□□□□ -0.97
CCDC39-201ENST00000442201 ASIC1P78348 528 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 CNTN2Q02246 1040 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 CYP4A11Q02928 519 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 KCNB1Q14721 858 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 EPHA7Q15375 998 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 DHX40Q8IX18 779 aaKnown RBP9□□□□□ -0.97
CCDC39-201ENST00000442201 GPRC5AQ8NFJ5 357 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 CDHR1Q96JP9 859 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 UNC45AQ9H3U1 944 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 BMP2KQ9NSY1 1161 aaPredicted RBP9□□□□□ -0.97
CCDC39-201ENST00000442201 TCEAL9Q9UHQ7 104 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 DNM3Q9UQ16 869 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 A0A0G2JMZ2 1700 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 POTEFA5A3E0 1075 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 B4DLN1 442 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 E9PMD0 336 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 IKBKBO14920 756 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 SSBP05455 408 aaKnown RBP eCLIP9□□□□□ -0.97
CCDC39-201ENST00000442201 SPATA31C1P0DKV0 1188 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 TPM4P67936 248 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 STXBP2Q15833 593 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 POTEGQ6S5H5 508 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 B3GNT9Q6UX72 402 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 SAPCD2Q86UD0 394 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 KRT222Q8N1A0 295 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 KIF18AQ8NI77 898 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 PARK7Q99497 189 aaKnown RBP9□□□□□ -0.97
CCDC39-201ENST00000442201 HSD17B14Q9BPX1 270 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 TUFT1Q9NNX1 390 aa9□□□□□ -0.97
CCDC39-201ENST00000442201 COL11A1P12107 1806 aaPredicted RBP8.99□□□□□ -0.97
CCDC39-201ENST00000442201 DDX39AO00148 427 aaKnown RBP8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms