RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 KRT26Q7Z3Y9 468 aa5.86□□□□□ -1.47
USP40-204ENST00000427947 NOSTRINQ8IVI9 506 aa5.86□□□□□ -1.47
USP40-204ENST00000427947 MZB1Q8WU39 189 aa5.86□□□□□ -1.47
USP40-204ENST00000427947 ORAI3Q9BRQ5 295 aa5.86□□□□□ -1.47
USP40-204ENST00000427947 RNF38Q9H0F5 515 aa5.86□□□□□ -1.47
USP40-204ENST00000427947 B4GALT6Q9UBX8 382 aa5.86□□□□□ -1.47
USP40-204ENST00000427947 FAN1Q9Y2M0 1017 aa5.86□□□□□ -1.47
USP40-204ENST00000427947 IRS2Q9Y4H2 1338 aa5.85□□□□□ -1.47
USP40-204ENST00000427947 FAM90A27PA6NNH2 459 aa5.85□□□□□ -1.47
USP40-204ENST00000427947 ETV2O00321 342 aaPredicted RBP5.85□□□□□ -1.47
USP40-204ENST00000427947 N4BP3O15049 544 aa5.85□□□□□ -1.47
USP40-204ENST00000427947 BUB1BO60566 1050 aaPredicted RBP5.85□□□□□ -1.47
USP40-204ENST00000427947 CLASP2O75122 1294 aaKnown RBP5.85□□□□□ -1.47
USP40-204ENST00000427947 FARP2O94887 1054 aaPredicted RBP5.85□□□□□ -1.47
USP40-204ENST00000427947 GJA4P35212 333 aa5.85□□□□□ -1.47
USP40-204ENST00000427947 SCNN1BP51168 640 aa5.85□□□□□ -1.47
USP40-204ENST00000427947 DLG4P78352 724 aa5.85□□□□□ -1.47
USP40-204ENST00000427947 MESP2Q0VG99 397 aa5.85□□□□□ -1.47
USP40-204ENST00000427947 STRN3Q13033 797 aa5.85□□□□□ -1.47
USP40-204ENST00000427947 PAN2Q504Q3 1202 aaKnown RBP5.85□□□□□ -1.47
USP40-204ENST00000427947 OGFOD2Q6N063 350 aa5.85□□□□□ -1.47
USP40-204ENST00000427947 ZC3H18Q86VM9 953 aaKnown RBP5.85□□□□□ -1.47
USP40-204ENST00000427947 KIF18BQ86Y91 864 aa5.85□□□□□ -1.47
USP40-204ENST00000427947 IGDCC3Q8IVU1 814 aa5.85□□□□□ -1.47
USP40-204ENST00000427947 FAM26EQ8N5C1 309 aa5.85□□□□□ -1.47
USP40-204ENST00000427947 OR2W6PQ8NHA6 318 aa5.85□□□□□ -1.47
USP40-204ENST00000427947 TTLL11Q8NHH1 800 aa5.85□□□□□ -1.47
USP40-204ENST00000427947 TOE1Q96GM8 510 aaKnown RBP5.85□□□□□ -1.47
USP40-204ENST00000427947 FAM84AQ96KN4 292 aa5.85□□□□□ -1.47
USP40-204ENST00000427947 GCM1Q9NP62 436 aa5.85□□□□□ -1.47
USP40-204ENST00000427947 PRAMEF25A6NGN4 478 aa5.84□□□□□ -1.47
USP40-204ENST00000427947 H7C1D1 291 aa5.84□□□□□ -1.47
USP40-204ENST00000427947 ATF2P15336 505 aa5.84□□□□□ -1.47
USP40-204ENST00000427947 IL2P60568 153 aa5.84□□□□□ -1.47
USP40-204ENST00000427947 NKX3-2P78367 333 aa5.84□□□□□ -1.47
USP40-204ENST00000427947 DSG1Q02413 1049 aa5.84□□□□□ -1.47
USP40-204ENST00000427947 CACNB2Q08289 660 aaPredicted RBP5.84□□□□□ -1.47
USP40-204ENST00000427947 TEPPQ6URK8 271 aa5.84□□□□□ -1.47
USP40-204ENST00000427947 DDX46Q7L014 1031 aaKnown RBP5.84□□□□□ -1.47
USP40-204ENST00000427947 CPA5Q8WXQ8 436 aa5.84□□□□□ -1.47
USP40-204ENST00000427947 THG1LQ9NWX6 298 aaKnown RBP5.84□□□□□ -1.47
USP40-204ENST00000427947 ACOT7O00154 380 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 LRG1P02750 347 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 C8BP07358 591 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 TMEM253P0C7T8 217 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 ZBTB48P10074 688 aaPredicted RBP5.83□□□□□ -1.48
USP40-204ENST00000427947 CYP2C8P10632 490 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 ATP2A2P16615 1042 aaKnown RBP5.83□□□□□ -1.48
USP40-204ENST00000427947 FAHP16930 419 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 GLDCP23378 1020 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 LIMS1P48059 325 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 KIF11P52732 1056 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 NFKB2Q00653 900 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 TMEM132BQ14DG7 1078 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 SEC23AQ15436 765 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 ZNF174Q15697 407 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 CR1LQ2VPA4 569 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 ZNF648Q5T619 568 aaPredicted RBP5.83□□□□□ -1.48
USP40-204ENST00000427947 STRA8Q7Z7C7 330 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 AFAP1L2Q8N4X5 818 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 SMARCC2Q8TAQ2 1214 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 CHTF18Q8WVB6 975 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 USP7Q93009 1102 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 GPR101Q96P66 508 aaPredicted RBP5.83□□□□□ -1.48
USP40-204ENST00000427947 SLC38A3Q99624 504 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 FAM126AQ9BYI3 521 aaPredicted RBP5.83□□□□□ -1.48
USP40-204ENST00000427947 PCIF1Q9H4Z3 704 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 NGRNQ9NPE2 291 aaKnown RBP5.83□□□□□ -1.48
USP40-204ENST00000427947 KCNH7Q9NS40 1196 aa5.83□□□□□ -1.48
USP40-204ENST00000427947 H2AFY2Q9P0M6 372 aaPredicted RBP5.83□□□□□ -1.48
USP40-204ENST00000427947 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.82□□□□□ -1.48
USP40-204ENST00000427947 C4BPAP04003 597 aaKnown RBP5.82□□□□□ -1.48
USP40-204ENST00000427947 YBX3P16989 372 aaKnown RBP eCLIP5.82□□□□□ -1.48
USP40-204ENST00000427947 IGFBP6P24592 240 aaPredicted RBP5.82□□□□□ -1.48
USP40-204ENST00000427947 ADCYAP1R1P41586 468 aa5.82□□□□□ -1.48
USP40-204ENST00000427947 DHCR24Q15392 516 aa5.82□□□□□ -1.48
USP40-204ENST00000427947 PTPROQ16827 1216 aa5.82□□□□□ -1.48
USP40-204ENST00000427947 ATG14Q6ZNE5 492 aa5.82□□□□□ -1.48
USP40-204ENST00000427947 B3GNT8Q7Z7M8 397 aa5.82□□□□□ -1.48
USP40-204ENST00000427947 KIAA1958Q8N8K9 716 aa5.82□□□□□ -1.48
USP40-204ENST00000427947 SMC1BQ8NDV3 1235 aa5.82□□□□□ -1.48
USP40-204ENST00000427947 PPP1R16BQ96T49 567 aa5.82□□□□□ -1.48
USP40-204ENST00000427947 SYT3Q9BQG1 590 aa5.82□□□□□ -1.48
USP40-204ENST00000427947 PDGFDQ9GZP0 370 aaPredicted RBP5.82□□□□□ -1.48
USP40-204ENST00000427947 OXSMQ9NWU1 459 aa5.82□□□□□ -1.48
USP40-204ENST00000427947 RBPJLQ9UBG7 517 aa5.82□□□□□ -1.48
USP40-204ENST00000427947 COL4A3BPQ9Y5P4 624 aa5.82□□□□□ -1.48
USP40-204ENST00000427947 B3GALT1Q9Y5Z6 326 aa5.82□□□□□ -1.48
USP40-204ENST00000427947 IRAK3Q9Y616 596 aa5.82□□□□□ -1.48
USP40-204ENST00000427947 TCAF2A6NFQ2 919 aa5.81□□□□□ -1.48
USP40-204ENST00000427947 NFIBO00712 420 aa5.81□□□□□ -1.48
USP40-204ENST00000427947 DVL2O14641 736 aa5.81□□□□□ -1.48
USP40-204ENST00000427947 NCLP19338 710 aaKnown RBP5.81□□□□□ -1.48
USP40-204ENST00000427947 SLC9A1P19634 815 aa5.81□□□□□ -1.48
USP40-204ENST00000427947 KPNA1P52294 538 aaPredicted RBP5.81□□□□□ -1.48
USP40-204ENST00000427947 FOXO4P98177 505 aa5.81□□□□□ -1.48
USP40-204ENST00000427947 CD276Q5ZPR3 534 aa5.81□□□□□ -1.48
USP40-204ENST00000427947 CREB3L3Q68CJ9 461 aa5.81□□□□□ -1.48
USP40-204ENST00000427947 TMC5Q6UXY8 1006 aa5.81□□□□□ -1.48
USP40-204ENST00000427947 ZCRB1Q8TBF4 217 aaKnown RBP5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms