RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 NEDD9Q14511 834 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 CCDC88AQ3V6T2 1871 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 ANKRD20A8PQ5CZ79 823 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 CYB5D1Q6P9G0 228 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 FBXO33Q7Z6M2 555 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 FAM228AQ86W67 206 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 UBLCP1Q8WVY7 318 aaPredicted RBP23.32■■□□□ 1.32
USP48-205ENST00000421625 RAD54LQ92698 747 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 SEC16BQ96JE7 1060 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 NUCKS1Q9H1E3 243 aaKnown RBP23.32■■□□□ 1.32
USP48-205ENST00000421625 ACTR5Q9H9F9 607 aaPredicted RBP23.32■■□□□ 1.32
USP48-205ENST00000421625 LRRC4CQ9HCJ2 640 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 DONSONQ9NYP3 566 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 SUFUQ9UMX1 484 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 MYH4Q9Y623 1939 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 FUKQ8N0W3 1084 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 FGFBP2Q9BYJ0 223 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 VAT1LQ9HCJ6 419 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 C6orf50Q9HD87 102 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 SLC37A4O43826 429 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 CRKLP46109 303 aaKnown RBP23.32■■□□□ 1.32
USP48-205ENST00000421625 MMP14P50281 582 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 ZCWPW2Q504Y3 356 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 PARP9Q8IXQ6 854 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 SCFD2Q8WU76 684 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 RAPGEF5Q92565 580 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 MTMR9Q96QG7 549 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 DDX47Q9H0S4 455 aaKnown RBP23.32■■□□□ 1.32
USP48-205ENST00000421625 CCDC87Q9NVE4 849 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 TBC1D7Q9P0N9 293 aa23.32■■□□□ 1.32
USP48-205ENST00000421625 NOVA2Q9UNW9 492 aaKnown RBP23.32■■□□□ 1.32
USP48-205ENST00000421625 LOC102724428A0A0B4J2F2 783 aa23.31■■□□□ 1.32
USP48-205ENST00000421625 KIF4AO95239 1232 aa23.31■■□□□ 1.32
USP48-205ENST00000421625 SIK1P57059 783 aa23.31■■□□□ 1.32
USP48-205ENST00000421625 ITPK1Q13572 414 aa23.31■■□□□ 1.32
USP48-205ENST00000421625 CUL1Q13616 776 aa23.31■■□□□ 1.32
USP48-205ENST00000421625 CALCRLQ16602 461 aa23.31■■□□□ 1.32
USP48-205ENST00000421625 FAM182BQ5T319 152 aa23.31■■□□□ 1.32
USP48-205ENST00000421625 MYOCDQ8IZQ8 938 aa23.31■■□□□ 1.32
USP48-205ENST00000421625 LRRC45Q96CN5 670 aa23.31■■□□□ 1.32
USP48-205ENST00000421625 CDCA7Q9BWT1 371 aaPredicted RBP23.31■■□□□ 1.32
USP48-205ENST00000421625 RIC8AQ9NPQ8 531 aa23.31■■□□□ 1.32
USP48-205ENST00000421625 BSDC1Q9NW68 430 aaPredicted RBP23.31■■□□□ 1.32
USP48-205ENST00000421625 THRAP3Q9Y2W1 955 aaKnown RBP23.31■■□□□ 1.32
USP48-205ENST00000421625 PPP2R2AP63151 447 aa23.31■■□□□ 1.32
USP48-205ENST00000421625 FKBP3Q00688 224 aaKnown RBP23.31■■□□□ 1.32
USP48-205ENST00000421625 SNCBQ16143 134 aa23.31■■□□□ 1.32
USP48-205ENST00000421625 RPAINQ86UA6 219 aa23.31■■□□□ 1.32
USP48-205ENST00000421625 CEP57Q86XR8 500 aa23.31■■□□□ 1.32
USP48-205ENST00000421625 DOT1LQ8TEK3 1739 aa23.3■■□□□ 1.32
USP48-205ENST00000421625 SART1O43290 800 aaKnown RBP23.3■■□□□ 1.32
USP48-205ENST00000421625 SMIM5Q71RC9 77 aa23.3■■□□□ 1.32
USP48-205ENST00000421625 PTF1AQ7RTS3 328 aa23.3■■□□□ 1.32
USP48-205ENST00000421625 SNX29Q8TEQ0 813 aa23.3■■□□□ 1.32
USP48-205ENST00000421625 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP23.3■■□□□ 1.322e-7■■■□□ 14.7
USP48-205ENST00000421625 CELF1Q92879 486 aaKnown RBP23.3■■□□□ 1.32
USP48-205ENST00000421625 CEP83Q9Y592 693 aa23.3■■□□□ 1.32
USP48-205ENST00000421625 ELF1P32519 619 aa23.3■■□□□ 1.32
USP48-205ENST00000421625 BIRC3Q13489 604 aa23.3■■□□□ 1.32
USP48-205ENST00000421625 ASIC2Q16515 512 aa23.3■■□□□ 1.32
USP48-205ENST00000421625 ERFEQ4G0M1 354 aa23.3■■□□□ 1.32
USP48-205ENST00000421625 WLSQ5T9L3 541 aa23.3■■□□□ 1.32
USP48-205ENST00000421625 ARHGAP27Q6ZUM4 889 aa23.3■■□□□ 1.32
USP48-205ENST00000421625 PROM2Q8N271 834 aa23.3■■□□□ 1.32
USP48-205ENST00000421625 C21orf2O43822 256 aa23.29■■□□□ 1.32
USP48-205ENST00000421625 TDP2O95551 362 aa23.29■■□□□ 1.32
USP48-205ENST00000421625 GNA11P29992 359 aa23.29■■□□□ 1.32
USP48-205ENST00000421625 COASYQ13057 564 aa23.29■■□□□ 1.32
USP48-205ENST00000421625 NELFCDQ8IXH7 590 aa23.29■■□□□ 1.32
USP48-205ENST00000421625 PHF20L1A8MW92 1017 aa23.29■■□□□ 1.32
USP48-205ENST00000421625 OPLAHO14841 1288 aa23.29■■□□□ 1.32
USP48-205ENST00000421625 DAPK3O43293 454 aa23.29■■□□□ 1.32
USP48-205ENST00000421625 USP11P51784 963 aa23.29■■□□□ 1.32
USP48-205ENST00000421625 MAGOHP61326 146 aaKnown RBP23.29■■□□□ 1.32
USP48-205ENST00000421625 ECM1Q16610 540 aa23.29■■□□□ 1.32
USP48-205ENST00000421625 USP17L2Q6R6M4 530 aa23.29■■□□□ 1.32
USP48-205ENST00000421625 RUFY4Q6ZNE9 571 aa23.29■■□□□ 1.32
USP48-205ENST00000421625 EIF1ADQ8N9N8 165 aaKnown RBP23.29■■□□□ 1.32
USP48-205ENST00000421625 N4BP2L2Q92802 583 aaPredicted RBP23.29■■□□□ 1.32
USP48-205ENST00000421625 MAGOHBQ96A72 148 aaKnown RBP23.29■■□□□ 1.32
USP48-205ENST00000421625 TPX2Q9ULW0 747 aaKnown RBP23.29■■□□□ 1.32
USP48-205ENST00000421625 ITGA4P13612 1032 aa23.28■■□□□ 1.32
USP48-205ENST00000421625 SCTRP47872 440 aa23.28■■□□□ 1.32
USP48-205ENST00000421625 SOGA3Q5TF21 947 aa23.28■■□□□ 1.32
USP48-205ENST00000421625 CACNA2D3Q8IZS8 1091 aa23.28■■□□□ 1.32
USP48-205ENST00000421625 SCLT1Q96NL6 688 aa23.28■■□□□ 1.32
USP48-205ENST00000421625 ODF2LQ9ULJ1 636 aa23.28■■□□□ 1.32
USP48-205ENST00000421625 NOC2LQ9Y3T9 749 aaKnown RBP23.28■■□□□ 1.32
USP48-205ENST00000421625 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.28■■□□□ 1.32
USP48-205ENST00000421625 LAMB2P55268 1798 aa23.28■■□□□ 1.32
USP48-205ENST00000421625 REXO1Q8N1G1 1221 aaKnown RBP23.28■■□□□ 1.32
USP48-205ENST00000421625 C3orf20Q8ND61 904 aa23.28■■□□□ 1.32
USP48-205ENST00000421625 SPZ1Q9BXG8 430 aa23.28■■□□□ 1.32
USP48-205ENST00000421625 AIPL1Q9NZN9 384 aa23.28■■□□□ 1.32
USP48-205ENST00000421625 AMACRQ9UHK6 382 aa23.28■■□□□ 1.32
USP48-205ENST00000421625 C5orf60A6NFR6 353 aa23.28■■□□□ 1.32
USP48-205ENST00000421625 BHMG1C9JSJ3 638 aaPredicted RBP23.28■■□□□ 1.32
USP48-205ENST00000421625 FXR2P51116 673 aaKnown RBP eCLIP23.28■■□□□ 1.325e-12■□□□□ 9.9
USP48-205ENST00000421625 PTK2Q05397 1052 aa23.28■■□□□ 1.32
USP48-205ENST00000421625 SGSM3Q96HU1 749 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms