RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 BCAS3Q9H6U6 928 aa23.04■■□□□ 1.28
VSX1-203ENST00000409285 LRWD1Q9UFC0 647 aa23.04■■□□□ 1.28
VSX1-203ENST00000409285 HOXD8P13378 290 aaPredicted RBP23.03■■□□□ 1.28
VSX1-203ENST00000409285 CCND3P30281 292 aaPredicted RBP23.03■■□□□ 1.28
VSX1-203ENST00000409285 ACTR2P61160 394 aa23.03■■□□□ 1.28
VSX1-203ENST00000409285 TLK2Q86UE8 772 aa23.03■■□□□ 1.28
VSX1-203ENST00000409285 NEK9Q8TD19 979 aa23.03■■□□□ 1.28
VSX1-203ENST00000409285 COPS5Q92905 334 aa23.03■■□□□ 1.28
VSX1-203ENST00000409285 HMX1Q9NP08 348 aaPredicted RBP23.03■■□□□ 1.28
VSX1-203ENST00000409285 KAT6AQ92794 2004 aa23.02■■□□□ 1.28
VSX1-203ENST00000409285 DDX39AO00148 427 aaKnown RBP23.02■■□□□ 1.28
VSX1-203ENST00000409285 CMA1P23946 247 aa23.02■■□□□ 1.28
VSX1-203ENST00000409285 GJC2Q5T442 439 aaPredicted RBP23.02■■□□□ 1.28
VSX1-203ENST00000409285 RESP18Q5W5W9 173 aa23.02■■□□□ 1.28
VSX1-203ENST00000409285 HAUS3Q68CZ6 603 aa23.02■■□□□ 1.28
VSX1-203ENST00000409285 SHC4Q6S5L8 630 aa23.02■■□□□ 1.28
VSX1-203ENST00000409285 SH3TC2Q8TF17 1288 aa23.02■■□□□ 1.28
VSX1-203ENST00000409285 GPR20Q99678 358 aa23.02■■□□□ 1.28
VSX1-203ENST00000409285 CCSER1Q9C0I3 900 aa23.02■■□□□ 1.28
VSX1-203ENST00000409285 UPF3AQ9H1J1 476 aaKnown RBP23.02■■□□□ 1.28
VSX1-203ENST00000409285 DISC1Q9NRI5 854 aa23.02■■□□□ 1.28
VSX1-203ENST00000409285 PCDHA10Q9Y5I2 948 aa23.02■■□□□ 1.28
VSX1-203ENST00000409285 FAM237AA0A1B0GTK4 181 aa23.01■■□□□ 1.27
VSX1-203ENST00000409285 POTEFA5A3E0 1075 aa23.01■■□□□ 1.27
VSX1-203ENST00000409285 EML1O00423 815 aa23.01■■□□□ 1.27
VSX1-203ENST00000409285 RARBP10826 455 aa23.01■■□□□ 1.27
VSX1-203ENST00000409285 EPHA7Q15375 998 aa23.01■■□□□ 1.27
VSX1-203ENST00000409285 HSDL1Q3SXM5 330 aa23.01■■□□□ 1.27
VSX1-203ENST00000409285 NCAPH2Q6IBW4 605 aa23.01■■□□□ 1.27
VSX1-203ENST00000409285 ABHD15Q6UXT9 468 aa23.01■■□□□ 1.27
VSX1-203ENST00000409285 MIER3Q7Z3K6 550 aa23.01■■□□□ 1.27
VSX1-203ENST00000409285 ERMNQ8TAM6 284 aa23.01■■□□□ 1.27
VSX1-203ENST00000409285 ARMC5Q96C12 935 aa23.01■■□□□ 1.27
VSX1-203ENST00000409285 ABHD8Q96I13 439 aa23.01■■□□□ 1.27
VSX1-203ENST00000409285 SPATA33Q96N06 139 aa23.01■■□□□ 1.27
VSX1-203ENST00000409285 DDX20Q9UHI6 824 aaKnown RBP23.01■■□□□ 1.27
VSX1-203ENST00000409285 SCN10AQ9Y5Y9 1956 aa23.01■■□□□ 1.27
VSX1-203ENST00000409285 DNAH12Q6ZR08 3092 aa23.01■■□□□ 1.27
VSX1-203ENST00000409285 IGKV6D-21A0A0A0MT36 114 aa23■■□□□ 1.27
VSX1-203ENST00000409285 A6NJR5 290 aa23■■□□□ 1.27
VSX1-203ENST00000409285 CHMP2AO43633 222 aa23■■□□□ 1.27
VSX1-203ENST00000409285 MUTP22033 750 aa23■■□□□ 1.27
VSX1-203ENST00000409285 CNGA1P29973 690 aa23■■□□□ 1.27
VSX1-203ENST00000409285 GJA9P57773 515 aa23■■□□□ 1.27
VSX1-203ENST00000409285 UBE2HP62256 183 aa23■■□□□ 1.27
VSX1-203ENST00000409285 OR6J1Q8NGC5 347 aa23■■□□□ 1.27
VSX1-203ENST00000409285 SEPT1Q8WYJ6 367 aa23■■□□□ 1.27
VSX1-203ENST00000409285 SYMPKQ92797 1274 aaKnown RBP23■■□□□ 1.27
VSX1-203ENST00000409285 HSD17B14Q9BPX1 270 aa23■■□□□ 1.27
VSX1-203ENST00000409285 MMTAG2Q9BU76 263 aaKnown RBP23■■□□□ 1.27
VSX1-203ENST00000409285 POLR3CQ9BUI4 534 aaPredicted RBP23■■□□□ 1.27
VSX1-203ENST00000409285 PAK6Q9NQU5 681 aaPredicted RBP23■■□□□ 1.27
VSX1-203ENST00000409285 EMSYQ7Z589 1322 aa23■■□□□ 1.27
VSX1-203ENST00000409285 GSTTP1A0A1W2PQM5 241 aa22.99■■□□□ 1.27
VSX1-203ENST00000409285 GOLGA6L4A6NEF3 574 aa22.99■■□□□ 1.27
VSX1-203ENST00000409285 NOP56O00567 594 aaKnown RBP22.99■■□□□ 1.27
VSX1-203ENST00000409285 RPA1P27694 616 aa22.99■■□□□ 1.27
VSX1-203ENST00000409285 MCM4P33991 863 aa22.99■■□□□ 1.27
VSX1-203ENST00000409285 UBA7P41226 1012 aa22.99■■□□□ 1.27
VSX1-203ENST00000409285 HYIQ5T013 277 aa22.99■■□□□ 1.27
VSX1-203ENST00000409285 KRT79Q5XKE5 535 aa22.99■■□□□ 1.27
VSX1-203ENST00000409285 MIS18BP1Q6P0N0 1132 aa22.99■■□□□ 1.27
VSX1-203ENST00000409285 KCTD17Q8N5Z5 321 aa22.99■■□□□ 1.27
VSX1-203ENST00000409285 LENG1Q96BZ8 264 aaPredicted RBP22.99■■□□□ 1.27
VSX1-203ENST00000409285 TUFT1Q9NNX1 390 aa22.99■■□□□ 1.27
VSX1-203ENST00000409285 LMBRD1Q9NUN5 540 aa22.99■■□□□ 1.27
VSX1-203ENST00000409285 SYNRGQ9UMZ2 1314 aa22.99■■□□□ 1.27
VSX1-203ENST00000409285 IGSF9BQ9UPX0 1349 aa22.99■■□□□ 1.27
VSX1-203ENST00000409285 KDM3AQ9Y4C1 1321 aa22.99■■□□□ 1.27
VSX1-203ENST00000409285 PP2D1A8MPX8 630 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 PRPF40AO75400 957 aaKnown RBP22.98■■□□□ 1.27
VSX1-203ENST00000409285 PSAPP07602 524 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 SUPT20HL2P0C7V6 817 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 TXLNAP40222 546 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 CPT1AP50416 773 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 MRPS27Q92552 414 aaKnown RBP22.98■■□□□ 1.27
VSX1-203ENST00000409285 EPSTI1Q96J88 318 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 ZNF333Q96JL9 665 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 EIF2AK1Q9BQI3 630 aaKnown RBP22.98■■□□□ 1.27
VSX1-203ENST00000409285 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.98■■□□□ 1.27
VSX1-203ENST00000409285 HPSEQ9Y251 543 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 SAMM50Q9Y512 469 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 DDX11L8A8MPP1 907 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 CTAGE5O15320 804 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 PPFIA4O75335 1185 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 LGR5O75473 907 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 P4HBP07237 508 aaKnown RBP22.98■■□□□ 1.27
VSX1-203ENST00000409285 MMP3P08254 477 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 PTGS1P23219 599 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 CST5P28325 142 aaPredicted RBP22.98■■□□□ 1.27
VSX1-203ENST00000409285 SPECC1Q5M775 1068 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 USP49Q70CQ1 688 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 CABP7Q86V35 215 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 AFAP1L1Q8TED9 768 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 SNX29Q8TEQ0 813 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 AFG1LQ8WV93 481 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 AP5M1Q9H0R1 490 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 TELO2Q9Y4R8 837 aa22.98■■□□□ 1.27
VSX1-203ENST00000409285 DYNC1LI2O43237 492 aaPredicted RBP22.97■■□□□ 1.27
VSX1-203ENST00000409285 ADAMTS4O75173 837 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms