RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 C11orf84Q9BUA3 381 aaPredicted RBP6.82□□□□□ -1.32
HMGB1P13-201ENST00000406019 XYLT2Q9H1B5 865 aa6.82□□□□□ -1.32
HMGB1P13-201ENST00000406019 SLC52A2Q9HAB3 445 aa6.82□□□□□ -1.32
HMGB1P13-201ENST00000406019 DTLQ9NZJ0 730 aa6.82□□□□□ -1.32
HMGB1P13-201ENST00000406019 RAPGEFL1Q9UHV5 662 aa6.82□□□□□ -1.32
HMGB1P13-201ENST00000406019 FAN1Q9Y2M0 1017 aa6.82□□□□□ -1.32
HMGB1P13-201ENST00000406019 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.81□□□□□ -1.32
HMGB1P13-201ENST00000406019 AQP7O14520 342 aa6.81□□□□□ -1.32
HMGB1P13-201ENST00000406019 PLD2O14939 933 aa6.81□□□□□ -1.32
HMGB1P13-201ENST00000406019 THBS2P35442 1172 aa6.81□□□□□ -1.32
HMGB1P13-201ENST00000406019 EPHA5P54756 1037 aa6.81□□□□□ -1.32
HMGB1P13-201ENST00000406019 RTP5Q14D33 572 aa6.81□□□□□ -1.32
HMGB1P13-201ENST00000406019 TEPPQ6URK8 271 aa6.81□□□□□ -1.32
HMGB1P13-201ENST00000406019 DHX37Q8IY37 1157 aaKnown RBP6.81□□□□□ -1.32
HMGB1P13-201ENST00000406019 CLEC4DQ8WXI8 215 aa6.81□□□□□ -1.32
HMGB1P13-201ENST00000406019 SCLYQ96I15 445 aa6.81□□□□□ -1.32
HMGB1P13-201ENST00000406019 CHMP4AQ9BY43 222 aa6.81□□□□□ -1.32
HMGB1P13-201ENST00000406019 FAM126AQ9BYI3 521 aaPredicted RBP6.81□□□□□ -1.32
HMGB1P13-201ENST00000406019 PARD6AQ9NPB6 346 aa6.81□□□□□ -1.32
HMGB1P13-201ENST00000406019 LUC7LQ9NQ29 371 aaKnown RBP6.81□□□□□ -1.32
HMGB1P13-201ENST00000406019 SLC27A2O14975 620 aa6.8□□□□□ -1.32
HMGB1P13-201ENST00000406019 INHBBP09529 407 aa6.8□□□□□ -1.32
HMGB1P13-201ENST00000406019 COL6A2P12110 1019 aa6.8□□□□□ -1.32
HMGB1P13-201ENST00000406019 MYCLP1P12525 358 aaPredicted RBP6.8□□□□□ -1.32
HMGB1P13-201ENST00000406019 SLURP1P55000 103 aa6.8□□□□□ -1.32
HMGB1P13-201ENST00000406019 CCDC181Q5TID7 509 aa6.8□□□□□ -1.32
HMGB1P13-201ENST00000406019 RNF180Q86T96 592 aa6.8□□□□□ -1.32
HMGB1P13-201ENST00000406019 PRPF38AQ8NAV1 312 aaKnown RBP6.8□□□□□ -1.32
HMGB1P13-201ENST00000406019 CHAC2Q8WUX2 184 aa6.8□□□□□ -1.32
HMGB1P13-201ENST00000406019 CLUHP3Q96NS8 147 aa6.8□□□□□ -1.32
HMGB1P13-201ENST00000406019 CAAP1Q9H8G2 361 aa6.8□□□□□ -1.32
HMGB1P13-201ENST00000406019 ATP8A1Q9Y2Q0 1164 aa6.8□□□□□ -1.32
HMGB1P13-201ENST00000406019 PCDHA8Q9Y5H6 950 aa6.8□□□□□ -1.32
HMGB1P13-201ENST00000406019 A0A0G2JLL6 359 aaPredicted RBP6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 GSG1L2A8MUP6 293 aa6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 FAM47E-STBD1D6RA91 191 aa6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 LTFP02788 710 aa6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 AMY2AP04746 511 aa6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 CKMP06732 381 aa6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 AMY2BP19961 511 aa6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 HOXA5P20719 270 aa6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 CDKN1CP49918 316 aaPredicted RBP6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 PAK1Q13153 545 aa6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 CD300LDQ6UXZ3 194 aa6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 RBM12BQ8IXT5 1001 aaKnown RBP6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 KYQ8NBH2 561 aa6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 SYT8Q8NBV8 401 aa6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 TOE1Q96GM8 510 aaKnown RBP6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 C20orf173Q96LM9 149 aa6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 KCNJ15Q99712 375 aa6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 MRPL4Q9BYD3 311 aaKnown RBP6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 PCDH18Q9HCL0 1135 aa6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 TRIM39Q9HCM9 518 aa6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 CHPF2Q9P2E5 772 aa6.79□□□□□ -1.32
HMGB1P13-201ENST00000406019 KRIT1O00522 736 aa6.78□□□□□ -1.32
HMGB1P13-201ENST00000406019 RAPGEF3O95398 923 aa6.78□□□□□ -1.32
HMGB1P13-201ENST00000406019 CRTAMO95727 393 aa6.78□□□□□ -1.32
HMGB1P13-201ENST00000406019 S100BP04271 92 aaPredicted RBP6.78□□□□□ -1.32
HMGB1P13-201ENST00000406019 KCNA6P17658 529 aa6.78□□□□□ -1.32
HMGB1P13-201ENST00000406019 BMP7P18075 431 aa6.78□□□□□ -1.32
HMGB1P13-201ENST00000406019 TUSC3Q13454 348 aa6.78□□□□□ -1.32
HMGB1P13-201ENST00000406019 SMAD4Q13485 552 aaKnown RBP6.78□□□□□ -1.32
HMGB1P13-201ENST00000406019 CARFQ8N187 725 aa6.78□□□□□ -1.32
HMGB1P13-201ENST00000406019 ZBTB8AQ96BR9 441 aa6.78□□□□□ -1.32
HMGB1P13-201ENST00000406019 ALG1Q9BT22 464 aa6.78□□□□□ -1.32
HMGB1P13-201ENST00000406019 HOMER2Q9NSB8 354 aa6.78□□□□□ -1.32
HMGB1P13-201ENST00000406019 INTS7Q9NVH2 962 aaKnown RBP6.78□□□□□ -1.32
HMGB1P13-201ENST00000406019 RBPJLQ9UBG7 517 aa6.78□□□□□ -1.32
HMGB1P13-201ENST00000406019 CBLCQ9ULV8 474 aa6.78□□□□□ -1.32
HMGB1P13-201ENST00000406019 MAPRE3Q9UPY8 281 aa6.78□□□□□ -1.32
HMGB1P13-201ENST00000406019 PCDHA9Q9Y5H5 950 aa6.78□□□□□ -1.32
HMGB1P13-201ENST00000406019 ZNF561-AS1K7EIQ3 104 aa6.77□□□□□ -1.33
HMGB1P13-201ENST00000406019 PDE8AO60658 829 aa6.77□□□□□ -1.33
HMGB1P13-201ENST00000406019 RASGRP1O95267 797 aa6.77□□□□□ -1.33
HMGB1P13-201ENST00000406019 GNAT1P11488 350 aa6.77□□□□□ -1.33
HMGB1P13-201ENST00000406019 GUCY1A3Q02108 690 aa6.77□□□□□ -1.33
HMGB1P13-201ENST00000406019 SPIRE1Q08AE8 756 aa6.77□□□□□ -1.33
HMGB1P13-201ENST00000406019 LCE1DQ5T752 114 aa6.77□□□□□ -1.33
HMGB1P13-201ENST00000406019 FERMT3Q86UX7 667 aa6.77□□□□□ -1.33
HMGB1P13-201ENST00000406019 ZC3H18Q86VM9 953 aaKnown RBP6.77□□□□□ -1.33
HMGB1P13-201ENST00000406019 NGRNQ9NPE2 291 aaKnown RBP6.77□□□□□ -1.33
HMGB1P13-201ENST00000406019 FAM83GA6ND36 823 aa6.76□□□□□ -1.33
HMGB1P13-201ENST00000406019 ACOT7O00154 380 aa6.76□□□□□ -1.33
HMGB1P13-201ENST00000406019 MAN2B1O00754 1011 aa6.76□□□□□ -1.33
HMGB1P13-201ENST00000406019 MAFKO60675 156 aa6.76□□□□□ -1.33
HMGB1P13-201ENST00000406019 RPL13P26373 211 aaKnown RBP6.76□□□□□ -1.33
HMGB1P13-201ENST00000406019 CNGA1P29973 690 aa6.76□□□□□ -1.33
HMGB1P13-201ENST00000406019 SOX5P35711 763 aa6.76□□□□□ -1.33
HMGB1P13-201ENST00000406019 EXOSC10Q01780 885 aaKnown RBP6.76□□□□□ -1.33
HMGB1P13-201ENST00000406019 ABHD17CQ6PCB6 329 aa6.76□□□□□ -1.33
HMGB1P13-201ENST00000406019 FGD2Q7Z6J4 655 aa6.76□□□□□ -1.33
HMGB1P13-201ENST00000406019 MTDHQ86UE4 582 aaKnown RBP6.76□□□□□ -1.33
HMGB1P13-201ENST00000406019 STK32CQ86UX6 486 aa6.76□□□□□ -1.33
HMGB1P13-201ENST00000406019 DDX42Q86XP3 938 aaKnown RBP eCLIP6.76□□□□□ -1.33
HMGB1P13-201ENST00000406019 TRIM48Q8IWZ4 208 aa6.76□□□□□ -1.33
HMGB1P13-201ENST00000406019 SP8Q8IXZ3 490 aa6.76□□□□□ -1.33
HMGB1P13-201ENST00000406019 AFAP1L2Q8N4X5 818 aa6.76□□□□□ -1.33
HMGB1P13-201ENST00000406019 TTLL6Q8N841 843 aa6.76□□□□□ -1.33
HMGB1P13-201ENST00000406019 FEZF2Q8TBJ5 459 aa6.76□□□□□ -1.33
HMGB1P13-201ENST00000406019 SPATA25Q9BR10 227 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms