RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 SMAD2Q15796 467 aaKnown RBP0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 PLEKHG4Q58EX7 1191 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 ZMAT1Q5H9K5 638 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 SLC9A4Q6AI14 798 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 ZNF788Q6ZQV5 615 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 BRAPQ7Z569 592 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 MILR1Q7Z6M3 343 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 DCP2Q8IU60 420 aaKnown RBP0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 SLFN12Q8IYM2 578 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 DCP1BQ8IZD4 617 aaKnown RBP0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 RETREG2Q8NC44 543 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 HELQQ8TDG4 1101 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 GAL3ST3Q96A11 431 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 MPHOSPH9Q99550 1183 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 SLC12A9Q9BXP2 914 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 METTL14Q9HCE5 456 aaKnown RBP0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 SEPT3Q9UH03 358 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 TRPS1Q9UHF7 1281 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 CBLCQ9ULV8 474 aa0.69□□□□□ -2.3
RNU6-540P-201ENST00000384622 ACIN1Q9UKV3 1341 aaKnown RBP0.68□□□□□ -2.3
RNU6-540P-201ENST00000384622 SGSM2O43147 1006 aa0.68□□□□□ -2.3
RNU6-540P-201ENST00000384622 PRG2P13727 222 aa0.68□□□□□ -2.3
RNU6-540P-201ENST00000384622 PLCG1P19174 1290 aa0.68□□□□□ -2.3
RNU6-540P-201ENST00000384622 SLC6A11P48066 632 aa0.68□□□□□ -2.3
RNU6-540P-201ENST00000384622 RRADP55042 308 aa0.68□□□□□ -2.3
RNU6-540P-201ENST00000384622 ERV3-1Q14264 604 aa0.68□□□□□ -2.3
RNU6-540P-201ENST00000384622 PCNX4Q63HM2 1172 aa0.68□□□□□ -2.3
RNU6-540P-201ENST00000384622 ZNF626Q68DY1 528 aa0.68□□□□□ -2.3
RNU6-540P-201ENST00000384622 PTF1AQ7RTS3 328 aa0.68□□□□□ -2.3
RNU6-540P-201ENST00000384622 TAF15Q92804 592 aaKnown RBP eCLIP0.68□□□□□ -2.3
RNU6-540P-201ENST00000384622 HMCESQ96FZ2 354 aa0.68□□□□□ -2.3
RNU6-540P-201ENST00000384622 COQ10AQ96MF6 247 aa0.68□□□□□ -2.3
RNU6-540P-201ENST00000384622 GPR87Q9BY21 358 aa0.68□□□□□ -2.3
RNU6-540P-201ENST00000384622 WDR11Q9BZH6 1224 aa0.68□□□□□ -2.3
RNU6-540P-201ENST00000384622 CRCT1Q9UGL9 99 aa0.68□□□□□ -2.3
RNU6-540P-201ENST00000384622 DIS3Q9Y2L1 958 aaKnown RBP0.68□□□□□ -2.3
RNU6-540P-201ENST00000384622 CENPVL1A0A0U1RR11 272 aa0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 POM121CA8CG34 1229 aa0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 CLASP2O75122 1294 aaKnown RBP0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 FBXO21O94952 628 aa0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 CHGBP05060 677 aa0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 LAG3P18627 525 aa0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 LAMB3Q13751 1172 aa0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 LEXMQ3ZCV2 418 aa0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 PHF19Q5T6S3 580 aa0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 TMC5Q6UXY8 1006 aa0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 RFX6Q8HWS3 928 aa0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 GPR135Q8IZ08 494 aa0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 LILRA3Q8N6C8 439 aaPredicted RBP0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 LINC00476Q8WZB0 136 aa0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 SLC9A6Q92581 669 aa0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 MIEF2Q96C03 454 aa0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 TOE1Q96GM8 510 aaKnown RBP0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 PTCHD1Q96NR3 888 aa0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 MTA3Q9BTC8 594 aa0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 BHMT2Q9H2M3 363 aa0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 ALG13Q9NP73 1137 aaKnown RBP0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 RTN4Q9NQC3 1192 aaKnown RBP0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 GFOD1Q9NXC2 390 aa0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 ANKFY1Q9P2R3 1169 aa0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 SH3BP1Q9Y3L3 701 aa0.67□□□□□ -2.3
RNU6-540P-201ENST00000384622 ARHGEF17Q96PE2 2063 aaPredicted RBP0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 WIPF3A6NGB9 483 aa0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 PPEF2O14830 753 aa0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 GRID2O43424 1007 aa0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 PPP1R11O60927 126 aaPredicted RBP0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 FBXO24O75426 580 aa0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 KNG1P01042 644 aa0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 GSNP06396 782 aa0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 HKR1P10072 659 aa0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 ORC1Q13415 861 aa0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 SEMA3AQ14563 771 aa0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 NBPF12Q5TAG4 269 aaPredicted RBP0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 CWF19L1Q69YN2 538 aaKnown RBP0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 CXorf67Q86X51 503 aaPredicted RBP0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 VGLL2Q8N8G2 317 aa0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 EPS8L3Q8TE67 593 aaKnown RBP0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 DENND1AQ8TEH3 1009 aa0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 NSMCE1Q8WV22 266 aa0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 KIF2CQ99661 725 aa0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 ALOXE3Q9BYJ1 711 aa0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 GULP1Q9UBP9 304 aa0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 GPR98Q8WXG9 6306 aa0.66□□□□□ -2.3
RNU6-540P-201ENST00000384622 ANTXRLA6NF34 631 aa0.65□□□□□ -2.31
RNU6-540P-201ENST00000384622 ARHGAP6O43182 974 aa0.65□□□□□ -2.31
RNU6-540P-201ENST00000384622 FZD6O60353 706 aa0.65□□□□□ -2.31
RNU6-540P-201ENST00000384622 LPXNO60711 386 aa0.65□□□□□ -2.31
RNU6-540P-201ENST00000384622 FUCA1P04066 466 aa0.65□□□□□ -2.31
RNU6-540P-201ENST00000384622 PRR35P0CG20 571 aa0.65□□□□□ -2.31
RNU6-540P-201ENST00000384622 TGFB3P10600 412 aa0.65□□□□□ -2.31
RNU6-540P-201ENST00000384622 NR4A2P43354 598 aa0.65□□□□□ -2.31
RNU6-540P-201ENST00000384622 NOP2P46087 812 aaKnown RBP0.65□□□□□ -2.31
RNU6-540P-201ENST00000384622 THBS3P49746 956 aa0.65□□□□□ -2.31
RNU6-540P-201ENST00000384622 PROK1P58294 105 aa0.65□□□□□ -2.31
RNU6-540P-201ENST00000384622 LINC00205P59089 165 aa0.65□□□□□ -2.31
RNU6-540P-201ENST00000384622 NFYCQ13952 458 aa0.65□□□□□ -2.31
RNU6-540P-201ENST00000384622 TEPPQ6URK8 271 aa0.65□□□□□ -2.31
RNU6-540P-201ENST00000384622 ZNF329Q86UD4 541 aa0.65□□□□□ -2.31
RNU6-540P-201ENST00000384622 CFHR4Q92496 578 aa0.65□□□□□ -2.31
RNU6-540P-201ENST00000384622 SEC14L1Q92503 715 aa0.65□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms