RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 HIP1O00291 1037 aa16.02■□□□□ 0.16
VPS29-201ENST00000360579 MBTPS2O43462 519 aa16.02■□□□□ 0.16
VPS29-201ENST00000360579 ARHGAP4P98171 946 aa16.02■□□□□ 0.16
VPS29-201ENST00000360579 HYAL1Q12794 435 aa16.02■□□□□ 0.16
VPS29-201ENST00000360579 PKN1Q16512 942 aa16.02■□□□□ 0.16
VPS29-201ENST00000360579 TAF2Q6P1X5 1199 aa16.02■□□□□ 0.16
VPS29-201ENST00000360579 CYFIP1Q7L576 1253 aa16.02■□□□□ 0.16
VPS29-201ENST00000360579 RSPH3Q86UC2 560 aa16.02■□□□□ 0.16
VPS29-201ENST00000360579 HOMER1Q86YM7 354 aa16.02■□□□□ 0.16
VPS29-201ENST00000360579 GPKOWQ92917 476 aaPredicted RBP eCLIP16.02■□□□□ 0.16
VPS29-201ENST00000360579 INPP4AQ96PE3 977 aaPredicted RBP16.02■□□□□ 0.16
VPS29-201ENST00000360579 GPR20Q99678 358 aa16.02■□□□□ 0.16
VPS29-201ENST00000360579 OSBPL7Q9BZF2 842 aa16.02■□□□□ 0.16
VPS29-201ENST00000360579 MAD2L2Q9UI95 211 aa16.02■□□□□ 0.16
VPS29-201ENST00000360579 TRIOO75962 3097 aa16.02■□□□□ 0.15
VPS29-201ENST00000360579 PALM3A6NDB9 673 aaPredicted RBP16.01■□□□□ 0.15
VPS29-201ENST00000360579 SPATA31C2B4DYI2 1134 aa16.01■□□□□ 0.15
VPS29-201ENST00000360579 GRM6O15303 877 aa16.01■□□□□ 0.15
VPS29-201ENST00000360579 FIBPO43427 364 aa16.01■□□□□ 0.15
VPS29-201ENST00000360579 MMP1P03956 469 aa16.01■□□□□ 0.15
VPS29-201ENST00000360579 ADAM17P78536 824 aa16.01■□□□□ 0.15
VPS29-201ENST00000360579 CLUL1Q15846 466 aa16.01■□□□□ 0.15
VPS29-201ENST00000360579 CWC27Q6UX04 472 aaKnown RBP16.01■□□□□ 0.15
VPS29-201ENST00000360579 RNF135Q8IUD6 432 aa16.01■□□□□ 0.15
VPS29-201ENST00000360579 LMBR1Q8WVP7 490 aa16.01■□□□□ 0.15
VPS29-201ENST00000360579 PRRX2Q99811 253 aa16.01■□□□□ 0.15
VPS29-201ENST00000360579 SENP7Q9BQF6 1050 aa16.01■□□□□ 0.15
VPS29-201ENST00000360579 RC3H2Q9HBD1 1191 aaKnown RBP16.01■□□□□ 0.15
VPS29-201ENST00000360579 MUTYHQ9UIF7 546 aa16.01■□□□□ 0.15
VPS29-201ENST00000360579 CD207Q9UJ71 328 aa16.01■□□□□ 0.15
VPS29-201ENST00000360579 MYH6P13533 1939 aa16.01■□□□□ 0.15
VPS29-201ENST00000360579 C5orf42Q9H799 3197 aa16.01■□□□□ 0.15
VPS29-201ENST00000360579 LAMA4Q16363 1823 aa16.01■□□□□ 0.15
VPS29-201ENST00000360579 FRMPD4Q14CM0 1322 aa16■□□□□ 0.15
VPS29-201ENST00000360579 RBAK-RBAKDNI3L0D1 243 aa16■□□□□ 0.15
VPS29-201ENST00000360579 STXBP3O00186 592 aa16■□□□□ 0.15
VPS29-201ENST00000360579 RPLP2P05387 115 aaKnown RBP16■□□□□ 0.15
VPS29-201ENST00000360579 LINC00271P0C7V0 271 aa16■□□□□ 0.15
VPS29-201ENST00000360579 DLX2Q07687 328 aaPredicted RBP16■□□□□ 0.15
VPS29-201ENST00000360579 BTG3Q14201 252 aaPredicted RBP16■□□□□ 0.15
VPS29-201ENST00000360579 NAALADL2Q58DX5 795 aa16■□□□□ 0.15
VPS29-201ENST00000360579 BMP8AQ7Z5Y6 402 aa16■□□□□ 0.15
VPS29-201ENST00000360579 GIMAP8Q8ND71 665 aaPredicted RBP16■□□□□ 0.15
VPS29-201ENST00000360579 EDAQ92838 391 aa16■□□□□ 0.15
VPS29-201ENST00000360579 ZFP91Q96JP5 570 aaPredicted RBP16■□□□□ 0.15
VPS29-201ENST00000360579 LNPKQ9C0E8 428 aa16■□□□□ 0.15
VPS29-201ENST00000360579 RIOX1Q9H6W3 641 aa16■□□□□ 0.15
VPS29-201ENST00000360579 EHMT1Q9H9B1 1298 aa16■□□□□ 0.15
VPS29-201ENST00000360579 NLRC5Q86WI3 1866 aa15.99■□□□□ 0.15
VPS29-201ENST00000360579 PNMA6FA0A0J9YX94 578 aa15.99■□□□□ 0.15
VPS29-201ENST00000360579 ENPP3O14638 875 aa15.99■□□□□ 0.15
VPS29-201ENST00000360579 TBX10O75333 385 aa15.99■□□□□ 0.15
VPS29-201ENST00000360579 CHRNA1P02708 482 aa15.99■□□□□ 0.15
VPS29-201ENST00000360579 GHRP10912 638 aa15.99■□□□□ 0.15
VPS29-201ENST00000360579 NDUFV1P49821 464 aa15.99■□□□□ 0.15
VPS29-201ENST00000360579 MRPS9P82933 396 aaKnown RBP15.99■□□□□ 0.15
VPS29-201ENST00000360579 SEC23AQ15436 765 aa15.99■□□□□ 0.15
VPS29-201ENST00000360579 UTP14CQ5TAP6 766 aaKnown RBP15.99■□□□□ 0.15
VPS29-201ENST00000360579 XRRA1Q6P2D8 792 aa15.99■□□□□ 0.15
VPS29-201ENST00000360579 TRIM50Q86XT4 487 aa15.99■□□□□ 0.15
VPS29-201ENST00000360579 P2RX5Q93086 422 aa15.99■□□□□ 0.15
VPS29-201ENST00000360579 ZNF689Q96CS4 500 aaPredicted RBP15.99■□□□□ 0.15
VPS29-201ENST00000360579 PIGSQ96S52 555 aa15.99■□□□□ 0.15
VPS29-201ENST00000360579 IGFLR1Q9H665 355 aa15.99■□□□□ 0.15
VPS29-201ENST00000360579 BCAS3Q9H6U6 928 aa15.99■□□□□ 0.15
VPS29-201ENST00000360579 ZNF318Q5VUA4 2279 aa15.99■□□□□ 0.15
VPS29-201ENST00000360579 EYA4O95677 639 aa15.98■□□□□ 0.15
VPS29-201ENST00000360579 PTPN5P54829 565 aa15.98■□□□□ 0.15
VPS29-201ENST00000360579 TRDNQ13061 729 aa15.98■□□□□ 0.15
VPS29-201ENST00000360579 ADAM15Q13444 863 aa15.98■□□□□ 0.15
VPS29-201ENST00000360579 LPIN1Q14693 890 aa15.98■□□□□ 0.15
VPS29-201ENST00000360579 GRM4Q14833 912 aa15.98■□□□□ 0.15
VPS29-201ENST00000360579 NLRX1Q86UT6 975 aa15.98■□□□□ 0.15
VPS29-201ENST00000360579 OSBPL3Q9H4L5 887 aa15.98■□□□□ 0.15
VPS29-201ENST00000360579 PLAGL2Q9UPG8 496 aa15.98■□□□□ 0.15
VPS29-201ENST00000360579 MYO7AQ13402 2215 aa15.97■□□□□ 0.15
VPS29-201ENST00000360579 DGKIO75912 1065 aa15.97■□□□□ 0.15
VPS29-201ENST00000360579 MGAT3Q09327 533 aa15.97■□□□□ 0.15
VPS29-201ENST00000360579 PPFIA1Q13136 1202 aa15.97■□□□□ 0.15
VPS29-201ENST00000360579 SEMA3FQ13275 785 aa15.97■□□□□ 0.15
VPS29-201ENST00000360579 TSHZ1Q6ZSZ6 1077 aa15.97■□□□□ 0.15
VPS29-201ENST00000360579 SUGP1Q8IWZ8 645 aaKnown RBP15.97■□□□□ 0.15
VPS29-201ENST00000360579 CUL5Q93034 780 aa15.97■□□□□ 0.15
VPS29-201ENST00000360579 CDHR1Q96JP9 859 aa15.97■□□□□ 0.15
VPS29-201ENST00000360579 RTEL1Q9NZ71 1219 aa15.97■□□□□ 0.15
VPS29-201ENST00000360579 USP34Q70CQ2 3546 aa15.96■□□□□ 0.15
VPS29-201ENST00000360579 ERICH2A1L162 156 aa15.96■□□□□ 0.15
VPS29-201ENST00000360579 TMEM221A6NGB7 291 aa15.96■□□□□ 0.15
VPS29-201ENST00000360579 M0R296 226 aa15.96■□□□□ 0.15
VPS29-201ENST00000360579 RRP1P56182 461 aaKnown RBP15.96■□□□□ 0.15
VPS29-201ENST00000360579 SP4Q02446 784 aa15.96■□□□□ 0.15
VPS29-201ENST00000360579 FBXO47Q5MNV8 452 aa15.96■□□□□ 0.15
VPS29-201ENST00000360579 PCNX4Q63HM2 1172 aa15.96■□□□□ 0.15
VPS29-201ENST00000360579 TRIM67Q6ZTA4 783 aa15.96■□□□□ 0.15
VPS29-201ENST00000360579 CMTR2Q8IYT2 770 aaKnown RBP15.96■□□□□ 0.15
VPS29-201ENST00000360579 EFHBQ8N7U6 833 aa15.96■□□□□ 0.15
VPS29-201ENST00000360579 SMARCC2Q8TAQ2 1214 aa15.96■□□□□ 0.15
VPS29-201ENST00000360579 PBXIP1Q96AQ6 731 aa15.96■□□□□ 0.15
VPS29-201ENST00000360579 MSLNLQ96KJ4 702 aa15.96■□□□□ 0.15
VPS29-201ENST00000360579 FTHL17Q9BXU8 183 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms