RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 TMEM47Q9BQJ4 181 aa17.46■□□□□ 0.39
HMGA1-202ENST00000347617 MCM8Q9UJA3 840 aa17.46■□□□□ 0.39
HMGA1-202ENST00000347617 TFR2Q9UP52 801 aa17.46■□□□□ 0.39
HMGA1-202ENST00000347617 DUSP10Q9Y6W6 482 aa17.46■□□□□ 0.39
HMGA1-202ENST00000347617 COL2A1P02458 1487 aaPredicted RBP17.46■□□□□ 0.39
HMGA1-202ENST00000347617 IGKV6D-41A0A0C4DH26 115 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 PALM3A6NDB9 673 aaPredicted RBP17.45■□□□□ 0.38
HMGA1-202ENST00000347617 ZNF263O14978 683 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 AKR1B10O60218 316 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 ENTPD3O75355 529 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 MOCS3O95396 460 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 PLEKHA8P1O95397 391 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 HSPA9P38646 679 aaKnown RBP17.45■□□□□ 0.38
HMGA1-202ENST00000347617 UBA7P41226 1012 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 PMS1P54277 932 aaKnown RBP17.45■□□□□ 0.38
HMGA1-202ENST00000347617 CYP27A1Q02318 531 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 RSBN1LQ6PCB5 846 aaPredicted RBP17.45■□□□□ 0.38
HMGA1-202ENST00000347617 ZKSCAN4Q969J2 545 aaPredicted RBP17.45■□□□□ 0.38
HMGA1-202ENST00000347617 PLCB1Q9NQ66 1216 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 MAPK8IP1Q9UQF2 711 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 MYO1FO00160 1098 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 NF2P35240 595 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 TNNC1P63316 161 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 AMPD3Q01432 767 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 BIRC3Q13489 604 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 PICALMQ13492 652 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 MIIPQ5JXC2 388 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.45■□□□□ 0.38
HMGA1-202ENST00000347617 RASSF8Q8NHQ8 419 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 GMLQ99445 158 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 C7orf25Q9BPX7 421 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 PI4KBQ9UBF8 816 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 CD2APQ9Y5K6 639 aa17.45■□□□□ 0.38
HMGA1-202ENST00000347617 ZNF233A6NK53 670 aa17.44■□□□□ 0.38
HMGA1-202ENST00000347617 RBAK-RBAKDNI3L0D1 243 aa17.44■□□□□ 0.38
HMGA1-202ENST00000347617 ELF1P32519 619 aa17.44■□□□□ 0.38
HMGA1-202ENST00000347617 SLC7A5Q01650 507 aa17.44■□□□□ 0.38
HMGA1-202ENST00000347617 SLC4A8Q2Y0W8 1093 aa17.44■□□□□ 0.38
HMGA1-202ENST00000347617 NAALADL2Q58DX5 795 aa17.44■□□□□ 0.38
HMGA1-202ENST00000347617 CEP85LQ5SZL2 805 aa17.44■□□□□ 0.38
HMGA1-202ENST00000347617 RNF187Q5TA31 235 aaPredicted RBP17.44■□□□□ 0.38
HMGA1-202ENST00000347617 CNNM4Q6P4Q7 775 aa17.44■□□□□ 0.38
HMGA1-202ENST00000347617 NFRKBQ6P4R8 1299 aa17.44■□□□□ 0.38
HMGA1-202ENST00000347617 RUFY4Q6ZNE9 571 aa17.44■□□□□ 0.38
HMGA1-202ENST00000347617 LARGE2Q8N3Y3 721 aa17.44■□□□□ 0.38
HMGA1-202ENST00000347617 SYN2Q92777 582 aaPredicted RBP17.44■□□□□ 0.38
HMGA1-202ENST00000347617 LRRC45Q96CN5 670 aa17.44■□□□□ 0.38
HMGA1-202ENST00000347617 JPH2Q9BR39 696 aaPredicted RBP17.44■□□□□ 0.38
HMGA1-202ENST00000347617 TLR10Q9BXR5 811 aa17.44■□□□□ 0.38
HMGA1-202ENST00000347617 MLXIPQ9HAP2 919 aa17.44■□□□□ 0.38
HMGA1-202ENST00000347617 ARHGAP20Q9P2F6 1191 aa17.44■□□□□ 0.38
HMGA1-202ENST00000347617 MAD2L2Q9UI95 211 aa17.44■□□□□ 0.38
HMGA1-202ENST00000347617 ZNRF3Q9ULT6 936 aa17.44■□□□□ 0.38
HMGA1-202ENST00000347617 SUFUQ9UMX1 484 aa17.44■□□□□ 0.38
HMGA1-202ENST00000347617 HEXIM1O94992 359 aaKnown RBP17.43■□□□□ 0.38
HMGA1-202ENST00000347617 SLC8A1P32418 973 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 EIF4A3P38919 411 aaKnown RBP17.43■□□□□ 0.38
HMGA1-202ENST00000347617 ITGB3BPQ13352 177 aaPredicted RBP17.43■□□□□ 0.38
HMGA1-202ENST00000347617 CUL1Q13616 776 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 MAN2A1Q16706 1144 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 VWA3BQ502W6 1294 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 DALRD3Q5D0E6 543 aaKnown RBP17.43■□□□□ 0.38
HMGA1-202ENST00000347617 CCDC13Q8IYE1 715 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 BLIDQ8IZY5 108 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 AGBL3Q8NEM8 1001 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 TMBIM4Q9HC24 238 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 RBM12Q9NTZ6 932 aaKnown RBP17.43■□□□□ 0.38
HMGA1-202ENST00000347617 MTMR4Q9NYA4 1195 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 HDAC9Q9UKV0 1011 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 STX8Q9UNK0 236 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 SIK3Q9Y2K2 1263 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 MATR3P43243 847 aaKnown RBP eCLIP17.43■□□□□ 0.38
HMGA1-202ENST00000347617 ATP1A2P50993 1020 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 MRPL12P52815 198 aaKnown RBP17.43■□□□□ 0.38
HMGA1-202ENST00000347617 MTMR3Q13615 1198 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 SNCBQ16143 134 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 CDC37Q16543 378 aaPredicted RBP17.43■□□□□ 0.38
HMGA1-202ENST00000347617 LACTB2Q53H82 288 aaPredicted RBP17.43■□□□□ 0.38
HMGA1-202ENST00000347617 AGBL2Q5U5Z8 902 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 TTC19Q6DKK2 380 aaPredicted RBP17.43■□□□□ 0.38
HMGA1-202ENST00000347617 TYW1BQ6NUM6 668 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 MTMR14Q8NCE2 650 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 DAGLBQ8NCG7 672 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 SPZ1Q9BXG8 430 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 VEZTQ9HBM0 779 aa17.43■□□□□ 0.38
HMGA1-202ENST00000347617 ATRNL1Q5VV63 1379 aa17.42■□□□□ 0.38
HMGA1-202ENST00000347617 ZBTB7AO95365 584 aa17.42■□□□□ 0.38
HMGA1-202ENST00000347617 SHMT1P34896 483 aa17.42■□□□□ 0.38
HMGA1-202ENST00000347617 RBM5P52756 815 aaKnown RBP eCLIP17.42■□□□□ 0.38
HMGA1-202ENST00000347617 NBPF9Q3BBW0 867 aa17.42■□□□□ 0.38
HMGA1-202ENST00000347617 KLHDC7AQ5VTJ3 777 aa17.42■□□□□ 0.38
HMGA1-202ENST00000347617 PIK3R5Q8WYR1 880 aa17.42■□□□□ 0.38
HMGA1-202ENST00000347617 CEP95Q96GE4 821 aa17.42■□□□□ 0.38
HMGA1-202ENST00000347617 SLC40A1Q9NP59 571 aa17.42■□□□□ 0.38
HMGA1-202ENST00000347617 FAM198AQ9UFP1 575 aa17.42■□□□□ 0.38
HMGA1-202ENST00000347617 PCDHA4Q9UN74 947 aa17.42■□□□□ 0.38
HMGA1-202ENST00000347617 ATAD5Q96QE3 1844 aa17.41■□□□□ 0.38
HMGA1-202ENST00000347617 GMNCA6NCL1 334 aa17.41■□□□□ 0.38
HMGA1-202ENST00000347617 C5orf60A6NFR6 353 aa17.41■□□□□ 0.38
HMGA1-202ENST00000347617 PAEPP09466 180 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms