RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 ESRRAP11474 423 aaPredicted RBP9.4□□□□□ -0.9
RTN3-202ENST00000339997 EPHB1P54762 984 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 MYL7Q01449 175 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 CYB5R4Q7L1T6 521 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 ZBTB38Q8NAP3 1195 aaPredicted RBP9.4□□□□□ -0.9
RTN3-202ENST00000339997 PRPF38AQ8NAV1 312 aaKnown RBP9.4□□□□□ -0.9
RTN3-202ENST00000339997 CCNYQ8ND76 341 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 PANX2Q96RD6 677 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 SCOCQ9UIL1 159 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 TRPM2O94759 1503 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 MYBL1P10243 752 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 EEF1B2P24534 225 aaKnown RBP9.4□□□□□ -0.9
RTN3-202ENST00000339997 PHBP35232 272 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 ASPHQ12797 758 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 SRLQ86TD4 932 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 SLC44A5Q8NCS7 719 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 TSC22D3Q99576 134 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 SH2D3AQ9BRG2 576 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 BHMT2Q9H2M3 363 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 GINM1Q9NU53 330 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 AMACRQ9UHK6 382 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 RWDD2AQ9UIY3 292 aa9.4□□□□□ -0.9
RTN3-202ENST00000339997 ZBTB24O43167 697 aaPredicted RBP9.4□□□□□ -0.91
RTN3-202ENST00000339997 MGEA5O60502 916 aa9.4□□□□□ -0.91
RTN3-202ENST00000339997 STK10O94804 968 aaKnown RBP9.4□□□□□ -0.91
RTN3-202ENST00000339997 AFPP02771 609 aaKnown RBP9.4□□□□□ -0.91
RTN3-202ENST00000339997 GUCY1A2P33402 732 aa9.4□□□□□ -0.91
RTN3-202ENST00000339997 ADD2P35612 726 aa9.4□□□□□ -0.91
RTN3-202ENST00000339997 UBE3CQ15386 1083 aa9.4□□□□□ -0.91
RTN3-202ENST00000339997 TMTC4Q5T4D3 741 aa9.4□□□□□ -0.91
RTN3-202ENST00000339997 SHC4Q6S5L8 630 aa9.4□□□□□ -0.91
RTN3-202ENST00000339997 EEPD1Q7L9B9 569 aa9.4□□□□□ -0.91
RTN3-202ENST00000339997 C7orf31Q8N865 590 aa9.4□□□□□ -0.91
RTN3-202ENST00000339997 CCDC124Q96CT7 223 aaKnown RBP9.4□□□□□ -0.91
RTN3-202ENST00000339997 HVCN1Q96D96 273 aa9.4□□□□□ -0.91
RTN3-202ENST00000339997 IL17RAQ96F46 866 aa9.4□□□□□ -0.91
RTN3-202ENST00000339997 NCAPGQ9BPX3 1015 aa9.4□□□□□ -0.91
RTN3-202ENST00000339997 ETNK1Q9HBU6 452 aa9.4□□□□□ -0.91
RTN3-202ENST00000339997 PCDHB4Q9Y5E5 795 aa9.4□□□□□ -0.91
RTN3-202ENST00000339997 SPHKAPQ2M3C7 1700 aa9.4□□□□□ -0.91
RTN3-202ENST00000339997 EDC4Q6P2E9 1401 aaKnown RBP9.4□□□□□ -0.91
RTN3-202ENST00000339997 STAM2O75886 525 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 TSTA3Q13630 321 aaPredicted RBP9.39□□□□□ -0.91
RTN3-202ENST00000339997 SLFN13Q68D06 897 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 TMTC3Q6ZXV5 915 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 RFX6Q8HWS3 928 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 PASD1Q8IV76 773 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 NOA1Q8NC60 698 aaKnown RBP9.39□□□□□ -0.91
RTN3-202ENST00000339997 AGR3Q8TD06 166 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 DTX3LQ8TDB6 740 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 DHTKD1Q96HY7 919 aaPredicted RBP9.39□□□□□ -0.91
RTN3-202ENST00000339997 ARHGEF5Q12774 1597 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 ITSN2Q9NZM3 1697 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 RASGRF1Q13972 1273 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 CTTNQ14247 550 aaKnown RBP9.39□□□□□ -0.91
RTN3-202ENST00000339997 SARM1Q6SZW1 724 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 TEKT1Q969V4 418 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 HDAC11Q96DB2 347 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 NAP1L4Q99733 375 aaKnown RBP9.39□□□□□ -0.91
RTN3-202ENST00000339997 AZI2Q9H6S1 392 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 EHD2Q9NZN4 543 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 PCDHA4Q9UN74 947 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 CLRN2A0PK11 232 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 FAM196BA6NMK8 535 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 PHF20L1A8MW92 1017 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 CAPN9O14815 690 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 RNF8O76064 485 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 MT-ND3P03897 115 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 ACTN1P12814 892 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 ATICP31939 592 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 ECE1P42892 770 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 CACNB3P54284 484 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 CCZ1BP86790 482 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 CCZ1P86791 482 aaPredicted RBP9.39□□□□□ -0.91
RTN3-202ENST00000339997 PTK2Q05397 1052 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 CDO1Q16878 200 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 SCARA5Q6ZMJ2 495 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 ARHGEF18Q6ZSZ5 1173 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 FBXO11Q86XK2 927 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 ANKRD35Q8N283 1001 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.39□□□□□ -0.91
RTN3-202ENST00000339997 HOOK2Q96ED9 719 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 NACA2Q9H009 215 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 PLXNC1O60486 1568 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.39□□□□□ -0.911e-77■■□□□ 12.1
RTN3-202ENST00000339997 A0A0G2JLW4 131 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 SPDYE16A6NNV3 312 aaPredicted RBP9.39□□□□□ -0.91
RTN3-202ENST00000339997 SPAG7O75391 227 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 CSPG5O95196 566 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 APOEP02649 317 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 MCAMP43121 646 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 APBA1Q02410 837 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 FMR1Q06787 632 aaKnown RBP eCLIP9.39□□□□□ -0.91
RTN3-202ENST00000339997 SPDYE2Q495Y8 402 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 LONP2Q86WA8 852 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 ZNF668Q96K58 619 aaPredicted RBP9.39□□□□□ -0.91
RTN3-202ENST00000339997 CYP4F11Q9HBI6 524 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 PPARGC1AQ9UBK2 798 aaKnown RBP9.39□□□□□ -0.91
RTN3-202ENST00000339997 PARP3Q9Y6F1 533 aa9.39□□□□□ -0.91
RTN3-202ENST00000339997 FCER1AP12319 257 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms