RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 KLRC4O43908 158 aa16.69■□□□□ 0.26
CCDC88C-202ENST00000334448 SLITRK3O94933 977 aa16.69■□□□□ 0.26
CCDC88C-202ENST00000334448 ALDH1A1P00352 501 aa16.69■□□□□ 0.26
CCDC88C-202ENST00000334448 ADORA2AP29274 412 aa16.69■□□□□ 0.26
CCDC88C-202ENST00000334448 ZNF165P49910 485 aa16.69■□□□□ 0.26
CCDC88C-202ENST00000334448 IRF5Q13568 498 aa16.69■□□□□ 0.26
CCDC88C-202ENST00000334448 IQCB1Q15051 598 aa16.69■□□□□ 0.26
CCDC88C-202ENST00000334448 MAMDC4Q6UXC1 1216 aa16.69■□□□□ 0.26
CCDC88C-202ENST00000334448 C11orf57Q6ZUT1 292 aaPredicted RBP16.69■□□□□ 0.26
CCDC88C-202ENST00000334448 GPR142Q7Z601 462 aa16.69■□□□□ 0.26
CCDC88C-202ENST00000334448 PLEKHH3Q7Z736 793 aa16.69■□□□□ 0.26
CCDC88C-202ENST00000334448 MSL3Q8N5Y2 521 aaKnown RBP16.69■□□□□ 0.26
CCDC88C-202ENST00000334448 ZNF784Q8NCA9 323 aaPredicted RBP16.69■□□□□ 0.26
CCDC88C-202ENST00000334448 GIMAP8Q8ND71 665 aaPredicted RBP16.69■□□□□ 0.26
CCDC88C-202ENST00000334448 CBX8Q9HC52 389 aa16.69■□□□□ 0.26
CCDC88C-202ENST00000334448 ZFYVE28Q9HCC9 887 aa16.69■□□□□ 0.26
CCDC88C-202ENST00000334448 IVNS1ABPQ9Y6Y0 642 aa16.69■□□□□ 0.26
CCDC88C-202ENST00000334448 PVALEFA0A1B0GWK0 134 aa16.68■□□□□ 0.26
CCDC88C-202ENST00000334448 POTEFA5A3E0 1075 aa16.68■□□□□ 0.26
CCDC88C-202ENST00000334448 CA12O43570 354 aa16.68■□□□□ 0.26
CCDC88C-202ENST00000334448 RHOBTB3O94955 611 aa16.68■□□□□ 0.26
CCDC88C-202ENST00000334448 EYA4O95677 639 aa16.68■□□□□ 0.26
CCDC88C-202ENST00000334448 CCNE2O96020 404 aa16.68■□□□□ 0.26
CCDC88C-202ENST00000334448 RPN1P04843 607 aaKnown RBP16.68■□□□□ 0.26
CCDC88C-202ENST00000334448 PGK2P07205 417 aa16.68■□□□□ 0.26
CCDC88C-202ENST00000334448 P4HBP07237 508 aaKnown RBP16.68■□□□□ 0.26
CCDC88C-202ENST00000334448 HOXC6P09630 235 aa16.68■□□□□ 0.26
CCDC88C-202ENST00000334448 PLA2G4BP0C869 781 aa16.68■□□□□ 0.26
CCDC88C-202ENST00000334448 SLC12A3P55017 1021 aa16.68■□□□□ 0.26
CCDC88C-202ENST00000334448 MCM6Q14566 821 aa16.68■□□□□ 0.26
CCDC88C-202ENST00000334448 POTEGQ6S5H5 508 aa16.68■□□□□ 0.26
CCDC88C-202ENST00000334448 MIER3Q7Z3K6 550 aa16.68■□□□□ 0.26
CCDC88C-202ENST00000334448 UIMC1Q96RL1 719 aa16.68■□□□□ 0.26
CCDC88C-202ENST00000334448 PLIN2Q99541 437 aa16.68■□□□□ 0.26
CCDC88C-202ENST00000334448 TCEAL9Q9UHQ7 104 aa16.68■□□□□ 0.26
CCDC88C-202ENST00000334448 DACH1Q9UI36 760 aa16.68■□□□□ 0.26
CCDC88C-202ENST00000334448 DNM3Q9UQ16 869 aa16.68■□□□□ 0.26
CCDC88C-202ENST00000334448 MYMKA6NI61 221 aa16.67■□□□□ 0.26
CCDC88C-202ENST00000334448 BIN1O00499 593 aa16.67■□□□□ 0.26
CCDC88C-202ENST00000334448 COBLO75128 1261 aa16.67■□□□□ 0.26
CCDC88C-202ENST00000334448 XRCC6P12956 609 aaKnown RBP eCLIP16.67■□□□□ 0.26
CCDC88C-202ENST00000334448 APLP1P51693 650 aa16.67■□□□□ 0.26
CCDC88C-202ENST00000334448 EHHADHQ08426 723 aa16.67■□□□□ 0.26
CCDC88C-202ENST00000334448 COBLL1Q53SF7 1204 aa16.67■□□□□ 0.26
CCDC88C-202ENST00000334448 SYT2Q8N9I0 419 aaPredicted RBP16.67■□□□□ 0.26
CCDC88C-202ENST00000334448 STAMQ92783 540 aa16.67■□□□□ 0.26
CCDC88C-202ENST00000334448 DYDC2Q96IM9 177 aa16.67■□□□□ 0.26
CCDC88C-202ENST00000334448 NACC1Q96RE7 527 aa16.67■□□□□ 0.26
CCDC88C-202ENST00000334448 CFHR5Q9BXR6 569 aa16.67■□□□□ 0.26
CCDC88C-202ENST00000334448 BLZF1Q9H2G9 400 aa16.67■□□□□ 0.26
CCDC88C-202ENST00000334448 ZSWIM4Q9H7M6 989 aa16.67■□□□□ 0.26
CCDC88C-202ENST00000334448 JPH1Q9HDC5 661 aaPredicted RBP16.67■□□□□ 0.26
CCDC88C-202ENST00000334448 RGL1Q9NZL6 768 aa16.67■□□□□ 0.26
CCDC88C-202ENST00000334448 FRMD3A2A2Y4 597 aa16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 IKBKBO14920 756 aa16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 CHMP2AO43633 222 aa16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 UBA1P22314 1058 aaKnown RBP16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 ERCC5P28715 1186 aaPredicted RBP16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 CASP1P29466 404 aa16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 NEDD9Q14511 834 aa16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 MORN1Q5T089 497 aa16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 ZNF658Q5TYW1 1059 aaPredicted RBP16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 WDR78Q5VTH9 848 aa16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 UNC13DQ70J99 1090 aa16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 C4orf19Q8IY42 314 aa16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 RNF214Q8ND24 703 aa16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 USP6NLQ92738 828 aa16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 DNAJC19Q96DA6 116 aa16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 LXNQ9BS40 222 aa16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 VTA1Q9NP79 307 aa16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 KCND2Q9NZV8 630 aa16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 CPA4Q9UI42 421 aa16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 PCDHA10Q9Y5I2 948 aa16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 SYNGAP1Q96PV0 1343 aa16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 PLXNB2O15031 1838 aa16.66■□□□□ 0.26
CCDC88C-202ENST00000334448 A0A087WWV3 80 aa16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 RBM47A0AV96 593 aaKnown RBP16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 E9PMD0 336 aa16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 DKC1O60832 514 aaKnown RBP eCLIP16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 ATG7O95352 703 aa16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 CYP11B2P19099 503 aa16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 YY1P25490 414 aa16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 QARSP47897 775 aaKnown RBP16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 CYP4A11Q02928 519 aa16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 CRHR2Q13324 411 aa16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 CYP4F22Q6NT55 531 aa16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 CCDC62Q6P9F0 684 aa16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 ARMCX2Q7L311 632 aa16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 CCDC47Q96A33 483 aaKnown RBP16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 KATNBL1Q9H079 304 aa16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 BMP2KQ9NSY1 1161 aaPredicted RBP16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 SLC5A4Q9NY91 659 aa16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 PKD2L1Q9P0L9 805 aa16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 WRAP73Q9P2S5 460 aaPredicted RBP16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 SLC9A2Q9UBY0 812 aa16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 DBR1Q9UK59 544 aaKnown RBP16.65■□□□□ 0.26
CCDC88C-202ENST00000334448 PPP1R2P41236 205 aa16.64■□□□□ 0.25
CCDC88C-202ENST00000334448 PSMC5P62195 406 aa16.64■□□□□ 0.25
CCDC88C-202ENST00000334448 PSMC6P62333 389 aa16.64■□□□□ 0.25
CCDC88C-202ENST00000334448 ASIC1P78348 528 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms