RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 ZNF792Q3KQV3 632 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 POTEGQ6S5H5 508 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 ARMCX2Q7L311 632 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 FBXO16Q8IX29 292 aaPredicted RBP11.22□□□□□ -0.61
HMGB3-201ENST00000325307 SMAP1Q8IYB5 467 aaPredicted RBP11.22□□□□□ -0.61
HMGB3-201ENST00000325307 A0A087WWV3 80 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 SPATA31C2B4DYI2 1134 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 TRPA1O75762 1119 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 TBC1D8O95759 1140 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 CASP1P29466 404 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 CTTNQ14247 550 aaKnown RBP11.22□□□□□ -0.61
HMGB3-201ENST00000325307 ISM2Q6H9L7 571 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 PDXDC2PQ6P474 469 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 CATSPER3Q86XQ3 398 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 PNMA5Q96PV4 448 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 BLZF1Q9H2G9 400 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 CUEDC2Q9H467 287 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 DHX15O43143 795 aaKnown RBP11.22□□□□□ -0.61
HMGB3-201ENST00000325307 SMC2O95347 1197 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 KRT76Q01546 638 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 TYRO3Q06418 890 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 NAALADL2Q58DX5 795 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 SMARCE1Q969G3 411 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 DYDC2Q96IM9 177 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 JPH1Q9HDC5 661 aaPredicted RBP11.22□□□□□ -0.61
HMGB3-201ENST00000325307 STK17AQ9UEE5 414 aa11.22□□□□□ -0.61
HMGB3-201ENST00000325307 RPA1P27694 616 aa11.21□□□□□ -0.61
HMGB3-201ENST00000325307 MCM6Q14566 821 aa11.21□□□□□ -0.61
HMGB3-201ENST00000325307 ECM1Q16610 540 aa11.21□□□□□ -0.61
HMGB3-201ENST00000325307 SV2BQ7L1I2 683 aa11.21□□□□□ -0.61
HMGB3-201ENST00000325307 CYFIP1Q7L576 1253 aa11.21□□□□□ -0.61
HMGB3-201ENST00000325307 LARP4BQ92615 738 aaKnown RBP11.21□□□□□ -0.61
HMGB3-201ENST00000325307 PCDHA5Q9Y5H7 936 aa11.21□□□□□ -0.61
HMGB3-201ENST00000325307 KCNA2P16389 499 aa11.21□□□□□ -0.62
HMGB3-201ENST00000325307 EPHA7Q15375 998 aa11.21□□□□□ -0.62
HMGB3-201ENST00000325307 TRMT1LQ7Z2T5 733 aaKnown RBP11.21□□□□□ -0.62
HMGB3-201ENST00000325307 BANK1Q8NDB2 785 aa11.21□□□□□ -0.62
HMGB3-201ENST00000325307 SLC9A2Q9UBY0 812 aa11.21□□□□□ -0.62
HMGB3-201ENST00000325307 DNM3Q9UQ16 869 aa11.21□□□□□ -0.62
HMGB3-201ENST00000325307 LCTP09848 1927 aa11.21□□□□□ -0.62
HMGB3-201ENST00000325307 WDR64B1ANS9 1081 aa11.21□□□□□ -0.62
HMGB3-201ENST00000325307 E9PMD0 336 aa11.21□□□□□ -0.62
HMGB3-201ENST00000325307 CYP2B6P20813 491 aa11.21□□□□□ -0.62
HMGB3-201ENST00000325307 AMPD3Q01432 767 aa11.21□□□□□ -0.62
HMGB3-201ENST00000325307 MAP2K5Q13163 448 aa11.21□□□□□ -0.62
HMGB3-201ENST00000325307 TMEM119Q4V9L6 283 aa11.21□□□□□ -0.62
HMGB3-201ENST00000325307 KCNK18Q7Z418 384 aa11.21□□□□□ -0.62
HMGB3-201ENST00000325307 RAD54LQ92698 747 aa11.21□□□□□ -0.62
HMGB3-201ENST00000325307 MAML3Q96JK9 1138 aa11.21□□□□□ -0.62
HMGB3-201ENST00000325307 BCAS3Q9H6U6 928 aa11.21□□□□□ -0.62
HMGB3-201ENST00000325307 MAGEF1Q9HAY2 307 aa11.21□□□□□ -0.62
HMGB3-201ENST00000325307 ICAM3P32942 547 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 MAP2K2P36507 400 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 PSMC4P43686 418 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 JAK3P52333 1124 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 FCGRTP55899 365 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 MDM2Q00987 491 aaPredicted RBP11.2□□□□□ -0.62
HMGB3-201ENST00000325307 LRRC15Q8TF66 581 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 POLR3CQ9BUI4 534 aaPredicted RBP11.2□□□□□ -0.62
HMGB3-201ENST00000325307 PLXNB2O15031 1838 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 LOC102724159A0A0B4J2E5 919 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 GTPBP6O43824 516 aaPredicted RBP11.2□□□□□ -0.62
HMGB3-201ENST00000325307 CCNE2O96020 404 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 SPATA31C1P0DKV0 1188 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 UBA1P22314 1058 aaKnown RBP11.2□□□□□ -0.62
HMGB3-201ENST00000325307 SP2Q02086 613 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 KIF22Q14807 665 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 PWP2Q15269 919 aaKnown RBP11.2□□□□□ -0.62
HMGB3-201ENST00000325307 STX1AQ16623 288 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 LY6KQ17RY6 165 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 ELOA2Q8IYF1 753 aaPredicted RBP11.2□□□□□ -0.62
HMGB3-201ENST00000325307 NPLOC4Q8TAT6 608 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 LXNQ9BS40 222 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 MLXIPQ9HAP2 919 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 TUFT1Q9NNX1 390 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 BLOC1S4Q9NUP1 217 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.2□□□□□ -0.62
HMGB3-201ENST00000325307 ZNFX1Q9P2E3 1918 aaKnown RBP11.2□□□□□ -0.62
HMGB3-201ENST00000325307 SLC26A4O43511 780 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 SFNP31947 248 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 RGS2P41220 211 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 CUL4BQ13620 913 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 NEDD9Q14511 834 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 HYIQ5T013 277 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 MORN1Q5T089 497 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 ZNF746Q6NUN9 644 aaPredicted RBP11.2□□□□□ -0.62
HMGB3-201ENST00000325307 HSD17B14Q9BPX1 270 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 TINF2Q9BSI4 451 aa11.2□□□□□ -0.62
HMGB3-201ENST00000325307 ZHX1Q9UKY1 873 aaPredicted RBP11.2□□□□□ -0.62
HMGB3-201ENST00000325307 DIS3Q9Y2L1 958 aaKnown RBP11.2□□□□□ -0.62
HMGB3-201ENST00000325307 BACH1O14867 736 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 SLITRK3O94933 977 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 GGPS1O95749 300 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 P4HBP07237 508 aaKnown RBP11.19□□□□□ -0.62
HMGB3-201ENST00000325307 TXNP10599 105 aaKnown RBP11.19□□□□□ -0.62
HMGB3-201ENST00000325307 TGFB3P10600 412 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 ASIC1P78348 528 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 TTLL4Q14679 1199 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 KCNV1Q6PIU1 500 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 SH3RF1Q7Z6J0 888 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms