RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 CALUO43852 315 aaPredicted RBP16.73■□□□□ 0.27
SHH-201ENST00000297261 SLC16A2P36021 539 aa16.73■□□□□ 0.27
SHH-201ENST00000297261 IRAK1P51617 712 aa16.73■□□□□ 0.27
SHH-201ENST00000297261 COL23A1Q86Y22 540 aaPredicted RBP16.73■□□□□ 0.27
SHH-201ENST00000297261 MIPOL1Q8TD10 442 aa16.73■□□□□ 0.27
SHH-201ENST00000297261 RAB3IPQ96QF0 476 aaPredicted RBP16.73■□□□□ 0.27
SHH-201ENST00000297261 SH2D4AQ9H788 454 aa16.73■□□□□ 0.27
SHH-201ENST00000297261 LRRC4BQ9NT99 713 aa16.73■□□□□ 0.27
SHH-201ENST00000297261 RNF14Q9UBS8 474 aa16.73■□□□□ 0.27
SHH-201ENST00000297261 PARP2Q9UGN5 583 aa16.73■□□□□ 0.27
SHH-201ENST00000297261 PHLPP1O60346 1717 aa16.73■□□□□ 0.27
SHH-201ENST00000297261 ECE2O60344 883 aa16.73■□□□□ 0.27
SHH-201ENST00000297261 EXOC3O60645 756 aa16.73■□□□□ 0.27
SHH-201ENST00000297261 TAF11Q15544 211 aa16.73■□□□□ 0.27
SHH-201ENST00000297261 MAN2A1Q16706 1144 aa16.73■□□□□ 0.27
SHH-201ENST00000297261 ABCB5Q2M3G0 1257 aa16.73■□□□□ 0.27
SHH-201ENST00000297261 CCDC93Q567U6 631 aa16.73■□□□□ 0.27
SHH-201ENST00000297261 KLC4Q9NSK0 619 aa16.73■□□□□ 0.27
SHH-201ENST00000297261 ATF5Q9Y2D1 282 aaPredicted RBP16.73■□□□□ 0.27
SHH-201ENST00000297261 VIRMAQ69YN4 1812 aaKnown RBP16.73■□□□□ 0.27
SHH-201ENST00000297261 AFDNP55196 1824 aaKnown RBP16.73■□□□□ 0.27
SHH-201ENST00000297261 FAM133AQ8N9E0 248 aa16.73■□□□□ 0.27
SHH-201ENST00000297261 USTQ9Y2C2 406 aa16.73■□□□□ 0.27
SHH-201ENST00000297261 PTPN22Q9Y2R2 807 aa16.73■□□□□ 0.27
SHH-201ENST00000297261 FAM196BA6NMK8 535 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 MEFVO15553 781 aaPredicted RBP16.72■□□□□ 0.27
SHH-201ENST00000297261 CCDC13Q8IYE1 715 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 LRRC1Q9BTT6 524 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 MXD3Q9BW11 206 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 NDST4Q9H3R1 872 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 VPS37BQ9H9H4 285 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 LUC7L3O95232 432 aaKnown RBP16.72■□□□□ 0.27
SHH-201ENST00000297261 GALNT17Q6IS24 598 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 ARMC9Q7Z3E5 817 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 NEK8Q86SG6 692 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 GPBP1Q86WP2 473 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 CEP95Q96GE4 821 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 ANO9A1A5B4 782 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 LGALS16A8MUM7 142 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 ATP2A2P16615 1042 aaKnown RBP16.72■□□□□ 0.27
SHH-201ENST00000297261 PRCPP42785 496 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 ASPRV1Q53RT3 343 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 HAUS3Q68CZ6 603 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 CC2D2BQ6DHV5 1058 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 NLRP14Q86W24 1093 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 PKD2L1Q9P0L9 805 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 DNM3Q9UQ16 869 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 DAGLAQ9Y4D2 1042 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 SCN11AQ9UI33 1791 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 BEND6Q5SZJ8 279 aaPredicted RBP16.72■□□□□ 0.27
SHH-201ENST00000297261 SPATA4Q8NEY3 305 aa16.72■□□□□ 0.27
SHH-201ENST00000297261 THAP12O43422 761 aa16.71■□□□□ 0.27
SHH-201ENST00000297261 BAG2O95816 211 aa16.71■□□□□ 0.27
SHH-201ENST00000297261 PPP2R5EQ16537 467 aa16.71■□□□□ 0.27
SHH-201ENST00000297261 IL17RAQ96F46 866 aa16.71■□□□□ 0.27
SHH-201ENST00000297261 PSTPIP2Q9H939 334 aa16.71■□□□□ 0.27
SHH-201ENST00000297261 GMNCA6NCL1 334 aa16.71■□□□□ 0.27
SHH-201ENST00000297261 IFNB1P01574 187 aa16.71■□□□□ 0.27
SHH-201ENST00000297261 SBK1Q52WX2 424 aa16.71■□□□□ 0.27
SHH-201ENST00000297261 SPICE1Q8N0Z3 855 aa16.71■□□□□ 0.27
SHH-201ENST00000297261 COA7Q96BR5 231 aa16.71■□□□□ 0.27
SHH-201ENST00000297261 AGXT2Q9BYV1 514 aa16.71■□□□□ 0.27
SHH-201ENST00000297261 PI4KBQ9UBF8 816 aa16.71■□□□□ 0.27
SHH-201ENST00000297261 POLLQ9UGP5 575 aa16.71■□□□□ 0.27
SHH-201ENST00000297261 GNA14O95837 355 aa16.71■□□□□ 0.27
SHH-201ENST00000297261 WDR78Q5VTH9 848 aa16.71■□□□□ 0.27
SHH-201ENST00000297261 MYCT1Q8N699 235 aa16.71■□□□□ 0.27
SHH-201ENST00000297261 RAB3IL1Q8TBN0 382 aa16.71■□□□□ 0.27
SHH-201ENST00000297261 OSBPL9Q96SU4 736 aa16.71■□□□□ 0.27
SHH-201ENST00000297261 RGL2O15211 777 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 ADCY8P40145 1251 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 TRAPPC10P48553 1259 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 POLE2P56282 527 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 EXOC3L4Q17RC7 722 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 USP49Q70CQ1 688 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 YIPF3Q9GZM5 350 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 GLT8D2Q9H1C3 349 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 DHX36Q9H2U1 1008 aaKnown RBP16.7■□□□□ 0.26
SHH-201ENST00000297261 ZNF446Q9NWS9 450 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 MAGOHP61326 146 aaKnown RBP16.7■□□□□ 0.26
SHH-201ENST00000297261 ARHGAP24Q8N264 748 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 FMO2Q99518 471 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 TRIM4Q9C037 500 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 THAP9Q9H5L6 903 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 TDRD3Q9H7E2 651 aaKnown RBP16.7■□□□□ 0.26
SHH-201ENST00000297261 PANK4Q9NVE7 773 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 UBE2Q2LH0YL09 131 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 KRT14P02533 472 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 GPATCH4Q5T3I0 446 aaKnown RBP16.7■□□□□ 0.26
SHH-201ENST00000297261 LCMT1Q9UIC8 334 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 TUBE1Q9UJT0 475 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 SUFUQ9UMX1 484 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 PCDHA12Q9UN75 941 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 FLT1P17948 1338 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 PPP1R37O75864 691 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 CFBP00751 764 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 PFKFB3Q16875 520 aaPredicted RBP16.7■□□□□ 0.26
SHH-201ENST00000297261 NUGGCQ68CJ6 796 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 PPP4R3AQ6IN85 833 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 STAG2Q8N3U4 1231 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 109.4 ms