RNA–Protein interactions for RNA: ENST00000296215.7

SNIP1-201, Transcript of Smad nuclear interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNIP1, Length 4,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-201ENST00000296215 DNAJC17Q9NVM6 304 aaKnown RBP12.65□□□□□ -0.38
SNIP1-201ENST00000296215 GOLGA8QA0A0J9YX86 632 aa12.65□□□□□ -0.39
SNIP1-201ENST00000296215 POTEB3A0JP26 581 aa12.65□□□□□ -0.39
SNIP1-201ENST00000296215 GOLGA8OA6NCC3 632 aa12.65□□□□□ -0.39
SNIP1-201ENST00000296215 GOLGA8NF8WBI6 632 aa12.65□□□□□ -0.39
SNIP1-201ENST00000296215 I3L4J1 428 aa12.65□□□□□ -0.39
SNIP1-201ENST00000296215 POTEBQ6S5H4 581 aa12.65□□□□□ -0.39
SNIP1-201ENST00000296215 SCG3Q8WXD2 468 aaKnown RBP12.65□□□□□ -0.39
SNIP1-201ENST00000296215 FADS3Q9Y5Q0 445 aa12.65□□□□□ -0.39
SNIP1-201ENST00000296215 CFTRP13569 1480 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 TCP11X1B4DZS4 312 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 XPOTO43592 962 aaKnown RBP12.64□□□□□ -0.39
SNIP1-201ENST00000296215 FLOT2Q14254 428 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 DDB1Q16531 1140 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 SPATA1Q5VX52 437 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 TMTC3Q6ZXV5 915 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 SPICE1Q8N0Z3 855 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 SPATA4Q8NEY3 305 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 DDI1Q8WTU0 396 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 RUNDC3BQ96NL0 473 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 BOLA2Q9H3K6 86 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 MRPL40Q9NQ50 206 aaKnown RBP12.64□□□□□ -0.39
SNIP1-201ENST00000296215 THOC2Q8NI27 1593 aaKnown RBP12.64□□□□□ -0.39
SNIP1-201ENST00000296215 SMIM31A0A1B0GVY4 71 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 PENKP01210 267 aaPredicted RBP12.64□□□□□ -0.39
SNIP1-201ENST00000296215 ATP1A1P05023 1023 aaKnown RBP12.64□□□□□ -0.39
SNIP1-201ENST00000296215 ITGA2BP08514 1039 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 LINGO3P0C6S8 592 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 PDE6AP16499 860 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 CCNFP41002 786 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 C21orf59P57076 290 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 LRRC14Q15048 493 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 PPP6R3Q5H9R7 873 aaPredicted RBP12.64□□□□□ -0.39
SNIP1-201ENST00000296215 ERP27Q96DN0 273 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 RAD21L1Q9H4I0 556 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 SEPT3Q9UH03 358 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.64□□□□□ -0.39
SNIP1-201ENST00000296215 A0A1W2PQ27 194 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 A0A1W2PQ64 194 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 A0A1W2PQD8 194 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 SHOX2O60902 331 aaPredicted RBP12.64□□□□□ -0.39
SNIP1-201ENST00000296215 MFAP3LO75121 409 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 PPARGP37231 505 aaPredicted RBP12.64□□□□□ -0.39
SNIP1-201ENST00000296215 IST1P53990 364 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 KCNA1Q09470 495 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 TRMT2AQ8IZ69 625 aaKnown RBP12.64□□□□□ -0.39
SNIP1-201ENST00000296215 HELBQ8NG08 1087 aaPredicted RBP12.64□□□□□ -0.39
SNIP1-201ENST00000296215 APPBP2Q92624 585 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 LRRC59Q96AG4 307 aaKnown RBP12.64□□□□□ -0.39
SNIP1-201ENST00000296215 GRAMD1AQ96CP6 724 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 BPIFA3Q9BQP9 254 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 EHMT1Q9H9B1 1298 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 EBF2Q9HAK2 575 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 PLGRKTQ9HBL7 147 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 ECHDC1Q9NTX5 307 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 SLC12A7Q9Y666 1083 aa12.64□□□□□ -0.39
SNIP1-201ENST00000296215 MAP3K19Q56UN5 1328 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 HTR3EA5X5Y0 456 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 CHEK2O96017 543 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 CEP85Q6P2H3 762 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 CDH24Q86UP0 819 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 CTAGE3PQ8IX95 158 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 ANKRD35Q8N283 1001 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 DEPTORQ8TB45 409 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 NLRP4Q96MN2 994 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 TUBGCP5Q96RT8 1024 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 KCND1Q9NSA2 647 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 TUBGCP4Q9UGJ1 667 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 FBXL5Q9UKA1 691 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 TMEM98Q9Y2Y6 226 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 LRIG3Q6UXM1 1119 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 RNF169Q8NCN4 708 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 FMO2Q99518 471 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 MEIS3Q99687 375 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 ALG1Q9BT22 464 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 RCOR1Q9UKL0 485 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 ZBTB1Q9Y2K1 713 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 A0A1B0GVG6 124 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 KPNA4O00629 521 aaPredicted RBP12.63□□□□□ -0.39
SNIP1-201ENST00000296215 POLR2DO15514 142 aaKnown RBP12.63□□□□□ -0.39
SNIP1-201ENST00000296215 BAIAP3O94812 1187 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 RHOBTB1O94844 696 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 TRIM16O95361 564 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 ENO2P09104 434 aaPredicted RBP12.63□□□□□ -0.39
SNIP1-201ENST00000296215 SMARCA1P28370 1054 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 OXCT1P55809 520 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 EHHADHQ08426 723 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 MRPL28Q13084 256 aaKnown RBP12.63□□□□□ -0.39
SNIP1-201ENST00000296215 NR1D2Q14995 579 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 CNGA3Q16281 694 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 ESCO1Q5FWF5 840 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 CLEC4GQ6UXB4 293 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 ZNF713Q8N859 430 aaPredicted RBP12.63□□□□□ -0.39
SNIP1-201ENST00000296215 CNKSR1Q969H4 720 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 FNBP1Q96RU3 617 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 ZMYND12Q9H0C1 365 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 SPC25Q9HBM1 224 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 MLXIPLQ9NP71 852 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 ADCY6O43306 1168 aa12.63□□□□□ -0.39
SNIP1-201ENST00000296215 MTRF1O75570 445 aaKnown RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms