RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 DYNC1I2Q13409 638 aaKnown RBP10.65□□□□□ -0.7
COL6A3-201ENST00000295550 RASGRF1Q13972 1273 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 MFSD14BQ5SR56 506 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 PARP3Q9Y6F1 533 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 SPDYE16A6NNV3 312 aaPredicted RBP10.65□□□□□ -0.7
COL6A3-201ENST00000295550 SPAG7O75391 227 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 RANBP1P43487 201 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 NR5A1Q13285 461 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 SPDYE2Q495Y8 402 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 KAZNQ674X7 775 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 GOLGA8CPA6NN73 597 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 SLC12A1Q13621 1099 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 TCP11X2Q5H9J9 407 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 UIMC1Q96RL1 719 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 PARD6BQ9BYG5 372 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 KCNF1Q9H3M0 494 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 PSTPIP2Q9H939 334 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 ATP8A1Q9Y2Q0 1164 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 PCDHB6Q9Y5E3 794 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 TTI1O43156 1089 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 KIF1CO43896 1103 aaKnown RBP10.65□□□□□ -0.7
COL6A3-201ENST00000295550 KRT31Q15323 416 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 ALS2CLQ60I27 953 aa10.65□□□□□ -0.7
COL6A3-201ENST00000295550 SMYD4Q8IYR2 804 aaPredicted RBP10.65□□□□□ -0.7
COL6A3-201ENST00000295550 SOS2Q07890 1332 aaPredicted RBP10.65□□□□□ -0.7
COL6A3-201ENST00000295550 hCG_2014768A0A024R1R8 64 aa10.65□□□□□ -0.71
COL6A3-201ENST00000295550 SGK1O00141 431 aa10.65□□□□□ -0.71
COL6A3-201ENST00000295550 PDE1BQ01064 536 aa10.65□□□□□ -0.71
COL6A3-201ENST00000295550 DHX9Q08211 1270 aaKnown RBP10.65□□□□□ -0.71
COL6A3-201ENST00000295550 TBC1D10CQ8IV04 446 aa10.65□□□□□ -0.71
COL6A3-201ENST00000295550 STK17AQ9UEE5 414 aa10.65□□□□□ -0.71
COL6A3-201ENST00000295550 NR1D1P20393 614 aa10.65□□□□□ -0.71
COL6A3-201ENST00000295550 RAPH1Q70E73 1250 aa10.65□□□□□ -0.71
COL6A3-201ENST00000295550 MAGEA9P43362 315 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 BFSP1Q12934 665 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 CCDC144BQ3MJ40 725 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 FAM186BQ8IYM0 893 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 TUBB6Q9BUF5 446 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 GINS2Q9Y248 185 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 GPC4O75487 556 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 TSTA3Q13630 321 aaPredicted RBP10.64□□□□□ -0.71
COL6A3-201ENST00000295550 TERF2Q15554 542 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 MAP7D3Q8IWC1 876 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 SUFUQ9UMX1 484 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 SLC4A7Q9Y6M7 1214 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 OCA2Q04671 838 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 SAMSN1Q9NSI8 373 aaKnown RBP10.64□□□□□ -0.71
COL6A3-201ENST00000295550 FGFR1OP2Q9NVK5 253 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 RIMBP2O15034 1052 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 NNTQ13423 1086 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 TAB3Q8N5C8 712 aaPredicted RBP10.64□□□□□ -0.71
COL6A3-201ENST00000295550 TOM1L1O75674 476 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 OATP04181 439 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 ARID5BQ14865 1188 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 SLC39A2Q9NP94 309 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 CPP00450 1065 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 SRGAP2BP0DMP2 458 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 NPR1P16066 1061 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 PSMC1P62191 440 aaKnown RBP10.64□□□□□ -0.71
COL6A3-201ENST00000295550 DAB2P98082 770 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 ZNF449Q6P9G9 518 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 SAAL1Q96ER3 474 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 RNF14Q9UBS8 474 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 TADA2BQ86TJ2 420 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 BRIP1Q9BX63 1249 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 PIH1D3Q9NQM4 214 aaKnown RBP10.64□□□□□ -0.71
COL6A3-201ENST00000295550 LMTK3Q96Q04 1460 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 UBN2Q6ZU65 1347 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 NDUFA10O95299 355 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 RASSF7Q02833 373 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 ASPRV1Q53RT3 343 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 ARHGEF18Q6ZSZ5 1173 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 ANKRD35Q8N283 1001 aa10.64□□□□□ -0.71
COL6A3-201ENST00000295550 UPF3AQ9H1J1 476 aaKnown RBP10.64□□□□□ -0.71
COL6A3-201ENST00000295550 METTL14Q9HCE5 456 aaKnown RBP10.64□□□□□ -0.71
COL6A3-201ENST00000295550 AKAP12Q02952 1782 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 ZNF804BA4D1E1 1349 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 MYCLP12524 364 aaPredicted RBP10.63□□□□□ -0.71
COL6A3-201ENST00000295550 C4orf50Q6ZRC1 276 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 SYCE1LA8MT33 242 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 ZBED6P86452 979 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 USH1GQ495M9 461 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 C10orf76Q5T2E6 689 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 MED10Q9BTT4 135 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 LY9Q9HBG7 655 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 MSH2P43246 934 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 C2orf54Q08AI8 447 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 CCHCR1Q8TD31 782 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 CYTH2Q99418 400 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 ANO3Q9BYT9 981 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 MAN2A1Q16706 1144 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 CYP4F22Q6NT55 531 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 ING2Q9H160 280 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 PICK1Q9NRD5 415 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 CAPN11Q9UMQ6 739 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 YARSP54577 528 aaKnown RBP10.63□□□□□ -0.71
COL6A3-201ENST00000295550 NAA35Q5VZE5 725 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 ATG16L1Q676U5 607 aa10.63□□□□□ -0.71
COL6A3-201ENST00000295550 NHEJ1Q9H9Q4 299 aaPredicted RBP10.63□□□□□ -0.71
COL6A3-201ENST00000295550 GTPBP10A4D1E9 387 aaKnown RBP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms