RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 DTHD1Q6ZMT9 781 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 ADGRF4Q8IZF3 695 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 RRP36Q96EU6 259 aaKnown RBP9.69□□□□□ -0.86
VPS4B-201ENST00000238497 ADD3Q9UEY8 706 aaKnown RBP9.69□□□□□ -0.86
VPS4B-201ENST00000238497 CTNND2Q9UQB3 1225 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 PFASO15067 1338 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 CNTNAP5Q8WYK1 1306 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 ASB14A6NK59 587 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 DYNC1LI2O43237 492 aaPredicted RBP9.69□□□□□ -0.86
VPS4B-201ENST00000238497 CYTH3O43739 400 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 UBE2SQ16763 222 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 ASPRV1Q53RT3 343 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 FBXO11Q86XK2 927 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 RANBP17Q9H2T7 1088 aaKnown RBP9.69□□□□□ -0.86
VPS4B-201ENST00000238497 CYP39A1Q9NYL5 469 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 LAMA4Q16363 1823 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 DNM1LO00429 736 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 BMP6P22004 513 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 RPS6P62753 249 aaKnown RBP9.69□□□□□ -0.86
VPS4B-201ENST00000238497 PDE4DQ08499 809 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 PFKFB3Q16875 520 aaPredicted RBP9.69□□□□□ -0.86
VPS4B-201ENST00000238497 QRICH1Q2TAL8 776 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 HABP4Q5JVS0 413 aaKnown RBP9.69□□□□□ -0.86
VPS4B-201ENST00000238497 SLC30A10Q6XR72 485 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 UBE2Q1Q7Z7E8 422 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 CCDC112Q8NEF3 446 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 AP5M1Q9H0R1 490 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 POLD4Q9HCU8 107 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 STK36Q9NRP7 1315 aa9.69□□□□□ -0.86
VPS4B-201ENST00000238497 SOWAHBA6NEL2 793 aa9.68□□□□□ -0.86
VPS4B-201ENST00000238497 RTP1P59025 263 aa9.68□□□□□ -0.86
VPS4B-201ENST00000238497 BEX3Q00994 111 aa9.68□□□□□ -0.86
VPS4B-201ENST00000238497 TNFAIP2Q03169 654 aa9.68□□□□□ -0.86
VPS4B-201ENST00000238497 CUL4BQ13620 913 aa9.68□□□□□ -0.86
VPS4B-201ENST00000238497 CEP135Q66GS9 1140 aa9.68□□□□□ -0.86
VPS4B-201ENST00000238497 TMEM60Q9H2L4 133 aa9.68□□□□□ -0.86
VPS4B-201ENST00000238497 STARD7Q9NQZ5 370 aa9.68□□□□□ -0.86
VPS4B-201ENST00000238497 PLA2G6O60733 806 aa9.68□□□□□ -0.86
VPS4B-201ENST00000238497 ZNF865P0CJ78 1059 aaPredicted RBP9.68□□□□□ -0.86
VPS4B-201ENST00000238497 MNX1P50219 401 aaPredicted RBP9.68□□□□□ -0.86
VPS4B-201ENST00000238497 SYT10Q6XYQ8 523 aa9.68□□□□□ -0.86
VPS4B-201ENST00000238497 DYMQ7RTS9 669 aa9.68□□□□□ -0.86
VPS4B-201ENST00000238497 FAM133AQ8N9E0 248 aa9.68□□□□□ -0.86
VPS4B-201ENST00000238497 IQUBQ8NA54 791 aa9.68□□□□□ -0.86
VPS4B-201ENST00000238497 TBC1D5Q92609 795 aa9.68□□□□□ -0.86
VPS4B-201ENST00000238497 CDK5RAP3Q96JB5 506 aa9.68□□□□□ -0.86
VPS4B-201ENST00000238497 MPHOSPH6Q99547 160 aaKnown RBP9.68□□□□□ -0.86
VPS4B-201ENST00000238497 PDGFCQ9NRA1 345 aa9.68□□□□□ -0.86
VPS4B-201ENST00000238497 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.68□□□□□ -0.86
VPS4B-201ENST00000238497 DNAJC25-GNG10A0A024R161 153 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 GNAQP50148 359 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 FUT2Q10981 343 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 BTNL9Q6UXG8 535 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 FCHSD1Q86WN1 690 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 HPS3Q969F9 1004 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 PAGE5Q96GU1 130 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 MRFAP1L1Q96HT8 127 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 GLT1D1Q96MS3 346 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 DESI2Q9BSY9 194 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 UBE2OQ9C0C9 1292 aaKnown RBP9.67□□□□□ -0.86
VPS4B-201ENST00000238497 ZSWIM4Q9H7M6 989 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 MAD2L2Q9UI95 211 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 GDAQ9Y2T3 454 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 FAM170AA1A519 330 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 N4BP3O15049 544 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 PPP2R5BQ15173 497 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 TRIM60Q495X7 471 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 HPSEQ9Y251 543 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 PCDHA1Q9Y5I3 950 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 PLXNB2O15031 1838 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 COL11A1P12107 1806 aaPredicted RBP9.67□□□□□ -0.86
VPS4B-201ENST00000238497 SYNGAP1Q96PV0 1343 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.67□□□□□ -0.86
VPS4B-201ENST00000238497 SPDYE4A6NLX3 237 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 SORBS3O60504 671 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 EIF2AK2P19525 551 aaKnown RBP9.67□□□□□ -0.86
VPS4B-201ENST00000238497 TLE2Q04725 743 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 KCNA10Q16322 511 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 TBCKQ8TEA7 893 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 JMJD4Q9H9V9 463 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 DNAI1Q9UI46 699 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 PCDHA4Q9UN74 947 aa9.67□□□□□ -0.86
VPS4B-201ENST00000238497 MRPL11Q9Y3B7 192 aaKnown RBP9.67□□□□□ -0.86
VPS4B-201ENST00000238497 RLFQ13129 1914 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 TEX33O43247 280 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 MYCLP12524 364 aaPredicted RBP9.66□□□□□ -0.86
VPS4B-201ENST00000238497 CAPN2P17655 700 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 NOVP48745 357 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 NCAPHQ15003 741 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 SEPT14Q6ZU15 432 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 PPFIBP1Q86W92 1011 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 AMNQ9BXJ7 453 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 C6orf50Q9HD87 102 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 TAB2Q9NYJ8 693 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 PNMA2Q9UL42 364 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 SYNRGQ9UMZ2 1314 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 TRIM49BA6NDI0 452 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 MYADML2A6NDP7 307 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 CBFA2T2O43439 604 aa9.66□□□□□ -0.86
VPS4B-201ENST00000238497 DUSP11O75319 330 aaKnown RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms