RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 MED4Q9NPJ6 270 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 BICDL2A1A5D9 508 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 POTEB2H3BUK9 544 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 ADCY7P51828 1080 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 RRP1BQ14684 758 aaKnown RBP11.79□□□□□ -0.52
USP28-201ENST00000003302 SPICE1Q8N0Z3 855 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 MMGT1Q8N4V1 131 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 AK8Q96MA6 479 aa11.79□□□□□ -0.52
USP28-201ENST00000003302 A0A1W2PQJ5 194 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 FXR2P51116 673 aaKnown RBP eCLIP11.78□□□□□ -0.52
USP28-201ENST00000003302 UAP1Q16222 522 aaPredicted RBP11.78□□□□□ -0.52
USP28-201ENST00000003302 ZC2HC1CQ53FD0 456 aaPredicted RBP11.78□□□□□ -0.52
USP28-201ENST00000003302 FIGNQ5HY92 759 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 FAM26FQ5R3K3 315 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 PIGOQ8TEQ8 1089 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 CDK5RAP3Q96JB5 506 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 COL24A1Q17RW2 1714 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 ANO9A1A5B4 782 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 TARSL2A2RTX5 802 aaKnown RBP11.78□□□□□ -0.52
USP28-201ENST00000003302 DDTLA6NHG4 134 aaPredicted RBP11.78□□□□□ -0.52
USP28-201ENST00000003302 IPO7O95373 1038 aaKnown RBP11.78□□□□□ -0.52
USP28-201ENST00000003302 GNA11P29992 359 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 CCDC40Q4G0X9 1142 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 TRIM59Q8IWR1 403 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 PCDHA12Q9UN75 941 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 EML1O00423 815 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 TACC1O75410 805 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 SPIRE1Q08AE8 756 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 ZNF543Q08ER8 600 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 KCNH2Q12809 1159 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 C8orf74Q6P047 294 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 ZNF662Q6ZS27 426 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 IRF2BP2Q7Z5L9 587 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 GPBP1Q86WP2 473 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 CATSPER3Q86XQ3 398 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 MYOCDQ8IZQ8 938 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 SH3GL2Q99962 352 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 GANQ9H2C0 597 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 ZNF219Q9P2Y4 722 aaPredicted RBP11.78□□□□□ -0.52
USP28-201ENST00000003302 COL4A3BPQ9Y5P4 624 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 SHOX2O60902 331 aaPredicted RBP11.78□□□□□ -0.52
USP28-201ENST00000003302 GDF11O95390 407 aa11.78□□□□□ -0.52
USP28-201ENST00000003302 ZBTB48P10074 688 aaPredicted RBP11.78□□□□□ -0.52
USP28-201ENST00000003302 TULP1O00294 542 aaPredicted RBP11.77□□□□□ -0.52
USP28-201ENST00000003302 OPLAHO14841 1288 aa11.77□□□□□ -0.52
USP28-201ENST00000003302 RPS6KA5O75582 802 aa11.77□□□□□ -0.52
USP28-201ENST00000003302 PLA2G4BP0C869 781 aa11.77□□□□□ -0.52
USP28-201ENST00000003302 TMOD1P28289 359 aa11.77□□□□□ -0.52
USP28-201ENST00000003302 GNAQP50148 359 aa11.77□□□□□ -0.52
USP28-201ENST00000003302 SAMD1Q6SPF0 538 aaPredicted RBP11.77□□□□□ -0.52
USP28-201ENST00000003302 VIPAS39Q9H9C1 493 aa11.77□□□□□ -0.52
USP28-201ENST00000003302 TAS2R14Q9NYV8 317 aa11.77□□□□□ -0.52
USP28-201ENST00000003302 NOVP48745 357 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 QRICH1Q2TAL8 776 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 DCAF17Q5H9S7 520 aaPredicted RBP11.77□□□□□ -0.53
USP28-201ENST00000003302 IQCKQ8N0W5 287 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 LENG9Q96B70 501 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 NGLY1Q96IV0 654 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 NUP58Q9BVL2 599 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 CENPHQ9H3R5 247 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 WRAP73Q9P2S5 460 aaPredicted RBP11.77□□□□□ -0.53
USP28-201ENST00000003302 MEIS2O14770 477 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 SPATA31C1P0DKV0 1188 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 SNHG28P0DPA3 235 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 GYS1P13807 737 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 HPDP32754 393 aaPredicted RBP11.77□□□□□ -0.53
USP28-201ENST00000003302 CORO7P57737 925 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 PRR16Q569H4 304 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 KRT79Q5XKE5 535 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 SPTY2D1Q68D10 685 aaPredicted RBP11.77□□□□□ -0.53
USP28-201ENST00000003302 KCNV1Q6PIU1 500 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 CDAN1Q8IWY9 1227 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 RUSC1Q9BVN2 902 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 USP34Q70CQ2 3546 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 FOXO6A8MYZ6 492 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 MYO1FO00160 1098 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 LAD1O00515 517 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 PPFIA4O75335 1185 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 CCDC181Q5TID7 509 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 SH3BP5LQ7L8J4 393 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 SFR1Q86XK3 245 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 RETREG2Q8NC44 543 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 BANK1Q8NDB2 785 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 FAM76AQ8TAV0 307 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 REEP2Q9BRK0 252 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 TRIM31Q9BZY9 425 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 NYXQ9GZU5 481 aa11.77□□□□□ -0.53
USP28-201ENST00000003302 BPTFQ12830 3046 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 IGKV6D-41A0A0C4DH26 115 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 KCNK3O14649 394 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 NR2F2P24468 414 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 CDK17Q00537 523 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 NNTQ13423 1086 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 ADAM9Q13443 819 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 KIAA1755Q5JYT7 1200 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 AMACRQ9UHK6 382 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 NHSQ6T4R5 1651 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 CALCAP01258 141 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 ZNF804AQ7Z570 1209 aa11.76□□□□□ -0.53
USP28-201ENST00000003302 MSL3Q8N5Y2 521 aaKnown RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 425.2 ms