RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeastyeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS1YKR001C ECM10P39987 644 aa5.29□□□□□ -1.56
VPS1YKR001C HYR1P40581 163 aaKnown RBP5.29□□□□□ -1.56
VPS1YKR001C CHS6P40955 746 aa5.29□□□□□ -1.56
VPS1YKR001C RTT101P47050 842 aa5.29□□□□□ -1.56
VPS1YKR001C SLD3P53135 668 aa5.29□□□□□ -1.56
VPS1YKR001C CUE3P53137 624 aaKnown RBP5.29□□□□□ -1.56
VPS1YKR001C PKP2P53170 491 aa5.29□□□□□ -1.56
VPS1YKR001C TYW3P53177 273 aa5.29□□□□□ -1.56
VPS1YKR001C RSM27P53305 110 aa5.29□□□□□ -1.56
VPS1YKR001C BUD17P53727 317 aa5.29□□□□□ -1.56
VPS1YKR001C ATP25Q03153 612 aa5.29□□□□□ -1.56
VPS1YKR001C URH1Q04179 340 aa5.29□□□□□ -1.56
VPS1YKR001C VID22Q05934 901 aa5.29□□□□□ -1.56
VPS1YKR001C RRP40Q08285 240 aaKnown RBP5.29□□□□□ -1.56
VPS1YKR001C GRE1Q08969 168 aa5.29□□□□□ -1.56
VPS1YKR001C YRR1Q12172 810 aa5.29□□□□□ -1.56
VPS1YKR001C ZRT2Q12436 422 aa5.29□□□□□ -1.56
VPS1YKR001C MEX67Q99257 599 aaKnown RBP5.29□□□□□ -1.56
VPS1YKR001C URA3P03962 267 aa5.28□□□□□ -1.56
VPS1YKR001C MSS18P08593 268 aa5.28□□□□□ -1.56
VPS1YKR001C NHP6AP11632 93 aaKnown RBP5.28□□□□□ -1.56
VPS1YKR001C HRR25P29295 494 aaKnown RBP5.28□□□□□ -1.56
VPS1YKR001C SPT14P32363 452 aa5.28□□□□□ -1.56
VPS1YKR001C AST1P35183 429 aa5.28□□□□□ -1.56
VPS1YKR001C AIM29P36154 155 aa5.28□□□□□ -1.56
VPS1YKR001C ADH5P38113 351 aaKnown RBP5.28□□□□□ -1.56
VPS1YKR001C STS1P38637 319 aa5.28□□□□□ -1.56
VPS1YKR001C WSS1P38838 269 aa5.28□□□□□ -1.56
VPS1YKR001C PDS1P40316 373 aaPredicted RBP5.28□□□□□ -1.56
VPS1YKR001C UBP7P40453 1071 aa5.28□□□□□ -1.56
VPS1YKR001C MET28P40573 187 aa5.28□□□□□ -1.56
VPS1YKR001C ZAP1P47043 880 aa5.28□□□□□ -1.56
VPS1YKR001C MTQ1P53944 314 aa5.28□□□□□ -1.56
VPS1YKR001C RCR2Q03446 210 aaKnown RBP5.28□□□□□ -1.56
VPS1YKR001C GPI17Q04080 534 aa5.28□□□□□ -1.56
VPS1YKR001C AIM32Q04689 311 aa5.28□□□□□ -1.56
VPS1YKR001C YML053CQ04978 212 aa5.28□□□□□ -1.56
VPS1YKR001C CIA1Q05583 330 aa5.28□□□□□ -1.56
VPS1YKR001C OPT2Q06593 877 aa5.28□□□□□ -1.56
VPS1YKR001C LDB18Q07887 179 aa5.28□□□□□ -1.56
VPS1YKR001C MEU1Q07938 337 aaKnown RBP RIP-Chip data5.28□□□□□ -1.56not detected
VPS1YKR001C GET3Q12154 354 aaKnown RBP5.28□□□□□ -1.56
VPS1YKR001C MSF1P08425 469 aa5.27□□□□□ -1.57
VPS1YKR001C YPK1P12688 680 aaKnown RBP5.27□□□□□ -1.57
VPS1YKR001C AIM17P23180 465 aaKnown RBP5.27□□□□□ -1.57
VPS1YKR001C FPS1P23900 669 aa5.27□□□□□ -1.57
VPS1YKR001C BUD5P25300 642 aaPredicted RBP5.27□□□□□ -1.57
VPS1YKR001C SAC1P32368 623 aaKnown RBP5.27□□□□□ -1.57
VPS1YKR001C ARO4P32449 370 aaKnown RBP5.27□□□□□ -1.57
VPS1YKR001C GCG1P32656 232 aaKnown RBP5.27□□□□□ -1.57
VPS1YKR001C SEF1P34228 1148 aa5.27□□□□□ -1.57
VPS1YKR001C PTC1P35182 281 aa5.27□□□□□ -1.57
VPS1YKR001C TAF14P35189 244 aa5.27□□□□□ -1.57
VPS1YKR001C KAE1P36132 386 aa5.27□□□□□ -1.57
VPS1YKR001C GLY1P37303 387 aaKnown RBP5.27□□□□□ -1.57
VPS1YKR001C YBR062CP38239 180 aa5.27□□□□□ -1.57
VPS1YKR001C BOL3P39724 118 aa5.27□□□□□ -1.57
VPS1YKR001C YEL068CP39977 110 aa5.27□□□□□ -1.57
VPS1YKR001C GIP2P40036 548 aa5.27□□□□□ -1.57
VPS1YKR001C SWP82P43554 623 aa5.27□□□□□ -1.57
VPS1YKR001C AVT1P47082 602 aa5.27□□□□□ -1.57
VPS1YKR001C SGF73P53165 657 aa5.27□□□□□ -1.57
VPS1YKR001C PDR16P53860 351 aaKnown RBP5.27□□□□□ -1.57
VPS1YKR001C PEX13P80667 386 aa5.27□□□□□ -1.57
VPS1YKR001C TMA20P89886 181 aaPredicted RBP5.27□□□□□ -1.57
VPS1YKR001C MRP51Q02950 344 aa5.27□□□□□ -1.57
VPS1YKR001C CSN9Q03981 162 aa5.27□□□□□ -1.57
VPS1YKR001C TCO89Q08921 799 aa5.27□□□□□ -1.57
VPS1YKR001C TMA46Q12000 345 aaKnown RBP5.27□□□□□ -1.57
VPS1YKR001C HAL9Q12180 1030 aa5.27□□□□□ -1.57
VPS1YKR001C DFG16Q99234 619 aa5.27□□□□□ -1.57
VPS1YKR001C RPS14AP06367 137 aaKnown RBP5.27□□□□□ -1.57
VPS1YKR001C PUT2P07275 575 aa5.27□□□□□ -1.57
VPS1YKR001C GFA1P14742 717 aaKnown RBP5.27□□□□□ -1.57
VPS1YKR001C CBS2P14905 389 aa5.27□□□□□ -1.57
VPS1YKR001C URA6P15700 204 aa5.27□□□□□ -1.57
VPS1YKR001C SYP1P25623 870 aaKnown RBP5.27□□□□□ -1.57
VPS1YKR001C CPR3P25719 182 aa5.27□□□□□ -1.57
VPS1YKR001C SKG6P32900 734 aaPredicted RBP5.27□□□□□ -1.57
VPS1YKR001C CLG1P35190 452 aa5.27□□□□□ -1.57
VPS1YKR001C CSG2P35206 410 aa5.27□□□□□ -1.57
VPS1YKR001C FAT1P38225 669 aa5.27□□□□□ -1.57
VPS1YKR001C ICS2P38284 255 aa5.27□□□□□ -1.57
VPS1YKR001C PCA1P38360 1216 aa5.27□□□□□ -1.57
VPS1YKR001C YHR097CP38809 366 aaKnown RBP5.27□□□□□ -1.57
VPS1YKR001C BZZ1P38822 633 aa5.27□□□□□ -1.57
VPS1YKR001C RPS14BP39516 138 aaKnown RBP5.27□□□□□ -1.57
VPS1YKR001C LRO1P40345 661 aa5.27□□□□□ -1.57
VPS1YKR001C IDP2P41939 412 aa5.27□□□□□ -1.57
VPS1YKR001C UBP6P43593 499 aaKnown RBP5.27□□□□□ -1.57
VPS1YKR001C IRC5P43610 853 aa5.27□□□□□ -1.57
VPS1YKR001C EMC2P47133 292 aaKnown RBP5.27□□□□□ -1.57
VPS1YKR001C ORC5P50874 479 aa5.27□□□□□ -1.57
VPS1YKR001C YGL159WP53110 370 aa5.27□□□□□ -1.57
VPS1YKR001C TAM41P53230 385 aa5.27□□□□□ -1.57
VPS1YKR001C RTT102P53330 157 aa5.27□□□□□ -1.57
VPS1YKR001C MAL13P53338 473 aa5.27□□□□□ -1.57
VPS1YKR001C NOP13P53883 403 aaKnown RBP RIP-Chip data5.27□□□□□ -1.57not detected
VPS1YKR001C RHO3Q00245 231 aaKnown RBP5.27□□□□□ -1.57
VPS1YKR001C ENT5Q03769 411 aaKnown RBP5.27□□□□□ -1.57
Retrieved 100 of 5,963 RNA–protein pairs in 13.2 ms