RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 NT5C3AQ9H0P0 336 aa22.18■■□□□ 1.14
SYNGAP1-227ENST00000638142 DDX25Q9UHL0 483 aaKnown RBP22.18■■□□□ 1.14
SYNGAP1-227ENST00000638142 MRPS25P82663 173 aaKnown RBP22.18■■□□□ 1.14
SYNGAP1-227ENST00000638142 NAB2Q15742 525 aa22.18■■□□□ 1.14
SYNGAP1-227ENST00000638142 ECM1Q16610 540 aa22.18■■□□□ 1.14
SYNGAP1-227ENST00000638142 LSM14BQ9BX40 385 aaKnown RBP22.18■■□□□ 1.14
SYNGAP1-227ENST00000638142 PNMA6FA0A0J9YX94 578 aa22.17■■□□□ 1.14
SYNGAP1-227ENST00000638142 GRID2IPA4D2P6 1211 aa22.17■■□□□ 1.14
SYNGAP1-227ENST00000638142 GCFC2P16383 781 aaKnown RBP22.17■■□□□ 1.14
SYNGAP1-227ENST00000638142 CLK2P49760 499 aaKnown RBP22.17■■□□□ 1.14
SYNGAP1-227ENST00000638142 GDF3Q9NR23 364 aa22.17■■□□□ 1.14
SYNGAP1-227ENST00000638142 SLC18A3Q16572 532 aa22.17■■□□□ 1.14
SYNGAP1-227ENST00000638142 TRIM59Q8IWR1 403 aa22.17■■□□□ 1.14
SYNGAP1-227ENST00000638142 HAS1Q92839 578 aa22.17■■□□□ 1.14
SYNGAP1-227ENST00000638142 EIF3HO15372 352 aaKnown RBP eCLIP22.16■■□□□ 1.14
SYNGAP1-227ENST00000638142 POLR2FP61218 127 aaKnown RBP22.16■■□□□ 1.14
SYNGAP1-227ENST00000638142 GPSM2P81274 684 aa22.16■■□□□ 1.14
SYNGAP1-227ENST00000638142 SKOR1P84550 965 aa22.16■■□□□ 1.14
SYNGAP1-227ENST00000638142 APBA1Q02410 837 aa22.16■■□□□ 1.14
SYNGAP1-227ENST00000638142 ICE2Q659A1 982 aa22.16■■□□□ 1.14
SYNGAP1-227ENST00000638142 CCDC65Q8IXS2 484 aa22.16■■□□□ 1.14
SYNGAP1-227ENST00000638142 MS4A14Q96JA4 679 aa22.16■■□□□ 1.14
SYNGAP1-227ENST00000638142 PCDHGC5Q9Y5F6 944 aa22.16■■□□□ 1.14
SYNGAP1-227ENST00000638142 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.16■■□□□ 1.14
SYNGAP1-227ENST00000638142 A0A087WUV0 522 aaPredicted RBP22.16■■□□□ 1.14
SYNGAP1-227ENST00000638142 PALMO75781 387 aa22.16■■□□□ 1.14
SYNGAP1-227ENST00000638142 UFL1O94874 794 aa22.16■■□□□ 1.14
SYNGAP1-227ENST00000638142 ATP2B4P23634 1241 aa22.16■■□□□ 1.14
SYNGAP1-227ENST00000638142 LRRC47Q8N1G4 583 aaKnown RBP22.16■■□□□ 1.14
SYNGAP1-227ENST00000638142 PAK2Q13177 524 aa22.15■■□□□ 1.14
SYNGAP1-227ENST00000638142 MFSD14BQ5SR56 506 aa22.15■■□□□ 1.14
SYNGAP1-227ENST00000638142 TBC1D22AQ8WUA7 517 aa22.15■■□□□ 1.14
SYNGAP1-227ENST00000638142 CUL5Q93034 780 aa22.15■■□□□ 1.14
SYNGAP1-227ENST00000638142 NAP1L4Q99733 375 aaKnown RBP22.15■■□□□ 1.14
SYNGAP1-227ENST00000638142 PCDHA12Q9UN75 941 aa22.15■■□□□ 1.14
SYNGAP1-227ENST00000638142 GRIN2DO15399 1336 aa22.15■■□□□ 1.14
SYNGAP1-227ENST00000638142 IGKV6D-41A0A0C4DH26 115 aa22.15■■□□□ 1.14
SYNGAP1-227ENST00000638142 MARCH6O60337 910 aa22.15■■□□□ 1.14
SYNGAP1-227ENST00000638142 UBE2SQ16763 222 aa22.15■■□□□ 1.14
SYNGAP1-227ENST00000638142 FAM98CQ17RN3 349 aaKnown RBP22.15■■□□□ 1.14
SYNGAP1-227ENST00000638142 TMC4Q7Z404 712 aa22.15■■□□□ 1.14
SYNGAP1-227ENST00000638142 CNBD1Q8NA66 436 aa22.15■■□□□ 1.14
SYNGAP1-227ENST00000638142 JMJD4Q9H9V9 463 aa22.15■■□□□ 1.14
SYNGAP1-227ENST00000638142 GPCPD1Q9NPB8 672 aa22.15■■□□□ 1.14
SYNGAP1-227ENST00000638142 AIPL1Q9NZN9 384 aa22.15■■□□□ 1.14
SYNGAP1-227ENST00000638142 SLC26A4O43511 780 aa22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 MRPL12P52815 198 aaKnown RBP22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 GNGT1P63211 74 aa22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 GABPAQ06546 454 aa22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 ZNF543Q08ER8 600 aa22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 TTMPQ5BVD1 217 aa22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 MEI1Q5TIA1 1274 aa22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 TADA2BQ86TJ2 420 aa22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 TBC1D5Q92609 795 aa22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 PCDHA2Q9Y5H9 948 aa22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 FOCADQ5VW36 1801 aa22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 EBAG9O00559 213 aa22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 HEXIM1O94992 359 aaKnown RBP22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 GLI1P08151 1106 aa22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 KLRC1P26715 233 aa22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 PTF1AQ7RTS3 328 aa22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 AMIGO3Q86WK7 504 aa22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 ZC3H3Q8IXZ2 948 aaKnown RBP22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 MREGQ8N565 214 aa22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 ARL8AQ96BM9 186 aa22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 ZIM3Q96PE6 472 aa22.14■■□□□ 1.13
SYNGAP1-227ENST00000638142 ATAD5Q96QE3 1844 aa22.13■■□□□ 1.13
SYNGAP1-227ENST00000638142 C10orf71Q711Q0 1435 aa22.13■■□□□ 1.13
SYNGAP1-227ENST00000638142 SHTN1A0MZ66 631 aa22.13■■□□□ 1.13
SYNGAP1-227ENST00000638142 ANKRD65E5RJM6 399 aa22.13■■□□□ 1.13
SYNGAP1-227ENST00000638142 PPP4R3CPQ6ZMV5 832 aa22.13■■□□□ 1.13
SYNGAP1-227ENST00000638142 ADGRF4Q8IZF3 695 aa22.13■■□□□ 1.13
SYNGAP1-227ENST00000638142 BCAS4Q8TDM0 211 aa22.13■■□□□ 1.13
SYNGAP1-227ENST00000638142 GGA1Q9UJY5 639 aa22.13■■□□□ 1.13
SYNGAP1-227ENST00000638142 CCNL1Q9UK58 526 aaPredicted RBP22.13■■□□□ 1.13
SYNGAP1-227ENST00000638142 UBAP1LF5GYI3 381 aa22.13■■□□□ 1.13
SYNGAP1-227ENST00000638142 TTLL1O95922 423 aa22.13■■□□□ 1.13
SYNGAP1-227ENST00000638142 SSBP05455 408 aaKnown RBP eCLIP22.13■■□□□ 1.13
SYNGAP1-227ENST00000638142 CCT5P48643 541 aa22.13■■□□□ 1.13
SYNGAP1-227ENST00000638142 RAPGEF1Q13905 1077 aa22.13■■□□□ 1.13
SYNGAP1-227ENST00000638142 INPP4AQ96PE3 977 aaPredicted RBP22.13■■□□□ 1.13
SYNGAP1-227ENST00000638142 KCTD10Q9H3F6 313 aa22.13■■□□□ 1.13
SYNGAP1-227ENST00000638142 PPP1R11O60927 126 aaPredicted RBP22.12■■□□□ 1.13
SYNGAP1-227ENST00000638142 FTCDO95954 541 aa22.12■■□□□ 1.13
SYNGAP1-227ENST00000638142 AKR1B1P15121 316 aa22.12■■□□□ 1.13
SYNGAP1-227ENST00000638142 CARSP49589 748 aaKnown RBP22.12■■□□□ 1.13
SYNGAP1-227ENST00000638142 KLHL30Q0D2K2 578 aa22.12■■□□□ 1.13
SYNGAP1-227ENST00000638142 IQCKQ8N0W5 287 aa22.12■■□□□ 1.13
SYNGAP1-227ENST00000638142 RPGRQ92834 1020 aaKnown RBP22.12■■□□□ 1.13
SYNGAP1-227ENST00000638142 EPB41L5Q9HCM4 733 aa22.12■■□□□ 1.13
SYNGAP1-227ENST00000638142 SWAP70Q9UH65 585 aa22.12■■□□□ 1.13
SYNGAP1-227ENST00000638142 A0A087X0T9 212 aa22.12■■□□□ 1.13
SYNGAP1-227ENST00000638142 BTNL10A8MVZ5 291 aa22.12■■□□□ 1.13
SYNGAP1-227ENST00000638142 PLA2G4BP0C869 781 aa22.12■■□□□ 1.13
SYNGAP1-227ENST00000638142 FAM228BP0C875 321 aa22.12■■□□□ 1.13
SYNGAP1-227ENST00000638142 RFC4P35249 363 aa22.12■■□□□ 1.13
SYNGAP1-227ENST00000638142 GUCY2DQ02846 1103 aa22.12■■□□□ 1.13
SYNGAP1-227ENST00000638142 ASIC2Q16515 512 aa22.12■■□□□ 1.13
SYNGAP1-227ENST00000638142 KIAA0753Q2KHM9 967 aa22.12■■□□□ 1.13
SYNGAP1-227ENST00000638142 EDRF1Q3B7T1 1238 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms