RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 GH1P01241 217 aa20.7■□□□□ 0.9
CLN3-243ENST00000635973 FOSL2P15408 326 aa20.7■□□□□ 0.9
CLN3-243ENST00000635973 NBPF20Q3BBV1 942 aa20.7■□□□□ 0.9
CLN3-243ENST00000635973 REXO1Q8N1G1 1221 aaKnown RBP20.7■□□□□ 0.9
CLN3-243ENST00000635973 PCDHA6Q9UN73 950 aa20.7■□□□□ 0.9
CLN3-243ENST00000635973 PCDHA8Q9Y5H6 950 aa20.7■□□□□ 0.9
CLN3-243ENST00000635973 UMODL1Q5DID0 1318 aa20.7■□□□□ 0.9
CLN3-243ENST00000635973 MYH7BA7E2Y1 1941 aa20.7■□□□□ 0.9
CLN3-243ENST00000635973 SCN10AQ9Y5Y9 1956 aa20.69■□□□□ 0.9
CLN3-243ENST00000635973 EIF3JO75822 258 aaKnown RBP20.69■□□□□ 0.9
CLN3-243ENST00000635973 FOSP01100 380 aaPredicted RBP20.69■□□□□ 0.9
CLN3-243ENST00000635973 AP3B2Q13367 1082 aa20.69■□□□□ 0.9
CLN3-243ENST00000635973 LY6KQ17RY6 165 aa20.69■□□□□ 0.9
CLN3-243ENST00000635973 NFRKBQ6P4R8 1299 aa20.69■□□□□ 0.9
CLN3-243ENST00000635973 MAFAQ8NHW3 353 aaPredicted RBP20.69■□□□□ 0.9
CLN3-243ENST00000635973 IL31RAQ8NI17 732 aa20.69■□□□□ 0.9
CLN3-243ENST00000635973 HERVK_113Q902F9 699 aa20.69■□□□□ 0.9
CLN3-243ENST00000635973 TMX3Q96JJ7 454 aa20.69■□□□□ 0.9
CLN3-243ENST00000635973 MSRAQ9UJ68 235 aa20.69■□□□□ 0.9
CLN3-243ENST00000635973 ARIH2O95376 493 aa20.68■□□□□ 0.9
CLN3-243ENST00000635973 CYP2C9P11712 490 aa20.68■□□□□ 0.9
CLN3-243ENST00000635973 FOSBP53539 338 aa20.68■□□□□ 0.9
CLN3-243ENST00000635973 PTPN11Q06124 597 aaPredicted RBP20.68■□□□□ 0.9
CLN3-243ENST00000635973 JAKMIP3Q5VZ66 844 aa20.68■□□□□ 0.9
CLN3-243ENST00000635973 OTOP2Q7RTS6 562 aa20.68■□□□□ 0.9
CLN3-243ENST00000635973 RETREG2Q8NC44 543 aa20.68■□□□□ 0.9
CLN3-243ENST00000635973 AFG1LQ8WV93 481 aa20.68■□□□□ 0.9
CLN3-243ENST00000635973 PGBD1Q96JS3 809 aa20.68■□□□□ 0.9
CLN3-243ENST00000635973 COL25A1Q9BXS0 654 aaPredicted RBP20.68■□□□□ 0.9
CLN3-243ENST00000635973 ANO3Q9BYT9 981 aa20.68■□□□□ 0.9
CLN3-243ENST00000635973 ZNF576Q9H609 170 aa20.68■□□□□ 0.9
CLN3-243ENST00000635973 TMEM260Q9NX78 707 aa20.68■□□□□ 0.9
CLN3-243ENST00000635973 MRVI1Q9Y6F6 885 aa20.68■□□□□ 0.9
CLN3-243ENST00000635973 FRMPD4Q14CM0 1322 aa20.68■□□□□ 0.9
CLN3-243ENST00000635973 HMGN5P82970 282 aaKnown RBP20.67■□□□□ 0.9
CLN3-243ENST00000635973 TRIM29Q14134 588 aa20.67■□□□□ 0.9
CLN3-243ENST00000635973 RAB30Q15771 203 aa20.67■□□□□ 0.9
CLN3-243ENST00000635973 RASIP1Q5U651 963 aa20.67■□□□□ 0.9
CLN3-243ENST00000635973 MCTP2Q6DN12 878 aa20.67■□□□□ 0.9
CLN3-243ENST00000635973 CCDC62Q6P9F0 684 aa20.67■□□□□ 0.9
CLN3-243ENST00000635973 FAM177A1Q8N128 213 aaPredicted RBP20.67■□□□□ 0.9
CLN3-243ENST00000635973 FAM184AQ8NB25 1140 aa20.67■□□□□ 0.9
CLN3-243ENST00000635973 SCLYQ96I15 445 aa20.67■□□□□ 0.9
CLN3-243ENST00000635973 WNT8AQ9H1J5 351 aa20.67■□□□□ 0.9
CLN3-243ENST00000635973 PCDHA4Q9UN74 947 aa20.67■□□□□ 0.9
CLN3-243ENST00000635973 KCNJ14Q9UNX9 436 aa20.67■□□□□ 0.9
CLN3-243ENST00000635973 ZBBXA8MT70 800 aa20.66■□□□□ 0.9
CLN3-243ENST00000635973 GRXCR1A8MXD5 290 aa20.66■□□□□ 0.9
CLN3-243ENST00000635973 PFKMP08237 780 aa20.66■□□□□ 0.9
CLN3-243ENST00000635973 FDPSP14324 419 aaKnown RBP20.66■□□□□ 0.9
CLN3-243ENST00000635973 GNPTABQ3T906 1256 aa20.66■□□□□ 0.9
CLN3-243ENST00000635973 PCNX4Q63HM2 1172 aa20.66■□□□□ 0.9
CLN3-243ENST00000635973 GALNT17Q6IS24 598 aa20.66■□□□□ 0.9
CLN3-243ENST00000635973 VSIG10LQ86VR7 867 aa20.66■□□□□ 0.9
CLN3-243ENST00000635973 RASGRP4Q8TDF6 673 aa20.66■□□□□ 0.9
CLN3-243ENST00000635973 ZFP91Q96JP5 570 aaPredicted RBP20.66■□□□□ 0.9
CLN3-243ENST00000635973 PBX4Q9BYU1 374 aa20.66■□□□□ 0.9
CLN3-243ENST00000635973 SLC4A7Q9Y6M7 1214 aa20.66■□□□□ 0.9
CLN3-243ENST00000635973 GBF1Q92538 1859 aa20.66■□□□□ 0.9
CLN3-243ENST00000635973 STAM2O75886 525 aa20.65■□□□□ 0.9
CLN3-243ENST00000635973 MMP3P08254 477 aa20.65■□□□□ 0.9
CLN3-243ENST00000635973 PBX2P40425 430 aa20.65■□□□□ 0.9
CLN3-243ENST00000635973 CLK2P49760 499 aaKnown RBP20.65■□□□□ 0.9
CLN3-243ENST00000635973 ARHGAP1Q07960 439 aa20.65■□□□□ 0.9
CLN3-243ENST00000635973 BFSP2Q13515 415 aa20.65■□□□□ 0.9
CLN3-243ENST00000635973 GRIN2CQ14957 1233 aa20.65■□□□□ 0.9
CLN3-243ENST00000635973 DGKDQ16760 1214 aa20.65■□□□□ 0.9
CLN3-243ENST00000635973 XRRA1Q6P2D8 792 aa20.65■□□□□ 0.9
CLN3-243ENST00000635973 DEFB128Q7Z7B8 93 aa20.65■□□□□ 0.9
CLN3-243ENST00000635973 DHX37Q8IY37 1157 aaKnown RBP20.65■□□□□ 0.9
CLN3-243ENST00000635973 PPP1R13LQ8WUF5 828 aa20.65■□□□□ 0.9
CLN3-243ENST00000635973 BRMS1Q9HCU9 246 aa20.65■□□□□ 0.9
CLN3-243ENST00000635973 RTEL1Q9NZ71 1219 aa20.65■□□□□ 0.9
CLN3-243ENST00000635973 DDX41Q9UJV9 622 aaKnown RBP20.65■□□□□ 0.9
CLN3-243ENST00000635973 CDH23Q9H251 3354 aa20.65■□□□□ 0.9
CLN3-243ENST00000635973 ACTN1P12814 892 aa20.64■□□□□ 0.89
CLN3-243ENST00000635973 LAMC2Q13753 1193 aa20.64■□□□□ 0.89
CLN3-243ENST00000635973 KCNV1Q6PIU1 500 aa20.64■□□□□ 0.89
CLN3-243ENST00000635973 BLIDQ8IZY5 108 aa20.64■□□□□ 0.89
CLN3-243ENST00000635973 CCDC155Q8N6L0 562 aa20.64■□□□□ 0.89
CLN3-243ENST00000635973 GAS2L1Q99501 681 aaPredicted RBP20.64■□□□□ 0.89
CLN3-243ENST00000635973 GJB4Q9NTQ9 266 aa20.64■□□□□ 0.89
CLN3-243ENST00000635973 CXXC1Q9P0U4 656 aaPredicted RBP20.64■□□□□ 0.89
CLN3-243ENST00000635973 KIF3AQ9Y496 699 aa20.64■□□□□ 0.89
CLN3-243ENST00000635973 SCN5AQ14524 2016 aa20.64■□□□□ 0.89
CLN3-243ENST00000635973 TRIP12Q14669 1992 aaPredicted RBP20.63■□□□□ 0.89
CLN3-243ENST00000635973 RFC2P35250 354 aa20.63■□□□□ 0.89
CLN3-243ENST00000635973 MRPS9P82933 396 aaKnown RBP20.63■□□□□ 0.89
CLN3-243ENST00000635973 PTGISQ16647 500 aa20.63■□□□□ 0.89
CLN3-243ENST00000635973 NLRX1Q86UT6 975 aa20.63■□□□□ 0.89
CLN3-243ENST00000635973 DAGLBQ8NCG7 672 aa20.63■□□□□ 0.89
CLN3-243ENST00000635973 PHF20Q9BVI0 1012 aa20.63■□□□□ 0.89
CLN3-243ENST00000635973 KATNAL1Q9BW62 490 aa20.63■□□□□ 0.89
CLN3-243ENST00000635973 SLC28A3Q9HAS3 691 aa20.63■□□□□ 0.89
CLN3-243ENST00000635973 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.63■□□□□ 0.89
CLN3-243ENST00000635973 PITPNM1O00562 1244 aa20.62■□□□□ 0.89
CLN3-243ENST00000635973 ADAMTS3O15072 1205 aa20.62■□□□□ 0.89
CLN3-243ENST00000635973 ZNF76P36508 570 aa20.62■□□□□ 0.89
CLN3-243ENST00000635973 SREBF1P36956 1147 aa20.62■□□□□ 0.89
CLN3-243ENST00000635973 ARHGAP4P98171 946 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms