RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 ASB14A6NK59 587 aa15.9■□□□□ 0.14
CLN3-242ENST00000635958 DHX15O43143 795 aaKnown RBP15.9■□□□□ 0.14
CLN3-242ENST00000635958 SLC26A4O43511 780 aa15.9■□□□□ 0.14
CLN3-242ENST00000635958 ICAM3P32942 547 aa15.9■□□□□ 0.14
CLN3-242ENST00000635958 UBA7P41226 1012 aa15.9■□□□□ 0.14
CLN3-242ENST00000635958 GNPTABQ3T906 1256 aa15.9■□□□□ 0.14
CLN3-242ENST00000635958 MORN1Q5T089 497 aa15.9■□□□□ 0.14
CLN3-242ENST00000635958 OTOP1Q7RTM1 612 aa15.9■□□□□ 0.14
CLN3-242ENST00000635958 RNF214Q8ND24 703 aa15.9■□□□□ 0.14
CLN3-242ENST00000635958 PYM1Q9BRP8 204 aaKnown RBP15.9■□□□□ 0.14
CLN3-242ENST00000635958 MMTAG2Q9BU76 263 aaKnown RBP15.9■□□□□ 0.14
CLN3-242ENST00000635958 ZNF236Q9UL36 1845 aa15.9■□□□□ 0.14
CLN3-242ENST00000635958 SPATA31C2B4DYI2 1134 aa15.89■□□□□ 0.13
CLN3-242ENST00000635958 CDC25AP30304 524 aa15.89■□□□□ 0.13
CLN3-242ENST00000635958 PDE4DQ08499 809 aa15.89■□□□□ 0.13
CLN3-242ENST00000635958 SEMA3FQ13275 785 aa15.89■□□□□ 0.13
CLN3-242ENST00000635958 PPP2R5CQ13362 524 aa15.89■□□□□ 0.13
CLN3-242ENST00000635958 MAMDC4Q6UXC1 1216 aa15.89■□□□□ 0.13
CLN3-242ENST00000635958 ELOA2Q8IYF1 753 aaPredicted RBP15.89■□□□□ 0.13
CLN3-242ENST00000635958 USP6NLQ92738 828 aa15.89■□□□□ 0.13
CLN3-242ENST00000635958 CLSTN2Q9H4D0 955 aa15.89■□□□□ 0.13
CLN3-242ENST00000635958 TBC1D22BQ9NU19 505 aa15.89■□□□□ 0.13
CLN3-242ENST00000635958 DOCK3Q8IZD9 2030 aa15.89■□□□□ 0.13
CLN3-242ENST00000635958 A0A087X0B3 334 aa15.89■□□□□ 0.13
CLN3-242ENST00000635958 UQCRHLA0A096LP55 91 aa15.89■□□□□ 0.13
CLN3-242ENST00000635958 PP2D1A8MPX8 630 aa15.89■□□□□ 0.13
CLN3-242ENST00000635958 POLR2DO15514 142 aaKnown RBP15.89■□□□□ 0.13
CLN3-242ENST00000635958 KINO60870 393 aaKnown RBP15.89■□□□□ 0.13
CLN3-242ENST00000635958 UQCRHP07919 91 aa15.89■□□□□ 0.13
CLN3-242ENST00000635958 HOXC6P09630 235 aa15.89■□□□□ 0.13
CLN3-242ENST00000635958 TXLNAP40222 546 aa15.89■□□□□ 0.13
CLN3-242ENST00000635958 LRCH2Q5VUJ6 765 aa15.89■□□□□ 0.13
CLN3-242ENST00000635958 STK24Q9Y6E0 443 aa15.89■□□□□ 0.13
CLN3-242ENST00000635958 POTEMA6NI47 508 aa15.88■□□□□ 0.13
CLN3-242ENST00000635958 GAS7O60861 476 aa15.88■□□□□ 0.13
CLN3-242ENST00000635958 ITGB3BPQ13352 177 aaPredicted RBP15.88■□□□□ 0.13
CLN3-242ENST00000635958 E2F4Q16254 413 aa15.88■□□□□ 0.13
CLN3-242ENST00000635958 LONRF3Q496Y0 759 aa15.88■□□□□ 0.13
CLN3-242ENST00000635958 DPP9Q86TI2 863 aa15.88■□□□□ 0.13
CLN3-242ENST00000635958 CABP7Q86V35 215 aa15.88■□□□□ 0.13
CLN3-242ENST00000635958 RNF186Q9NXI6 227 aa15.88■□□□□ 0.13
CLN3-242ENST00000635958 SLC5A4Q9NY91 659 aa15.88■□□□□ 0.13
CLN3-242ENST00000635958 GJD2Q9UKL4 321 aa15.88■□□□□ 0.13
CLN3-242ENST00000635958 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.88■□□□□ 0.13
CLN3-242ENST00000635958 ATP9AO75110 1047 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 CCDC192P0DO97 292 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 TGFB3P10600 412 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 MAP2K5Q13163 448 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 HYIQ5T013 277 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 KRT79Q5XKE5 535 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 RBM43Q6ZSC3 357 aaKnown RBP15.87■□□□□ 0.13
CLN3-242ENST00000635958 MSL3Q8N5Y2 521 aaKnown RBP15.87■□□□□ 0.13
CLN3-242ENST00000635958 IQUBQ8NA54 791 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 UIMC1Q96RL1 719 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 SENP7Q9BQF6 1050 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 FUCA2Q9BTY2 467 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 TEKT3Q9BXF9 490 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 NUP62CLQ9H1M0 184 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 NFASCO94856 1347 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 PLXNA1Q9UIW2 1896 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 THSD7BQ9C0I4 1608 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 KIAA1217Q5T5P2 1943 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 CTAGE5O15320 804 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 ACTN4O43707 911 aaKnown RBP15.87■□□□□ 0.13
CLN3-242ENST00000635958 ADCY5O95622 1261 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 CAVIN2O95810 425 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 SLFN14P0C7P3 912 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 KCNA2P16389 499 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 KRBA2Q6ZNG9 492 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 MAML3Q96JK9 1138 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 DISC1Q9NRI5 854 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 SPTLC3Q9NUV7 552 aa15.87■□□□□ 0.13
CLN3-242ENST00000635958 HSPA1AP0DMV8 641 aaKnown RBP15.86■□□□□ 0.13
CLN3-242ENST00000635958 HSPA1BP0DMV9 641 aaKnown RBP15.86■□□□□ 0.13
CLN3-242ENST00000635958 CTGFP29279 349 aa15.86■□□□□ 0.13
CLN3-242ENST00000635958 LACTBP83111 547 aaPredicted RBP15.86■□□□□ 0.13
CLN3-242ENST00000635958 KARSQ15046 597 aaKnown RBP15.86■□□□□ 0.13
CLN3-242ENST00000635958 KANK3Q6NY19 840 aa15.86■□□□□ 0.13
CLN3-242ENST00000635958 KCNV1Q6PIU1 500 aa15.86■□□□□ 0.13
CLN3-242ENST00000635958 PDILTQ8N807 584 aa15.86■□□□□ 0.13
CLN3-242ENST00000635958 MYRIPQ8NFW9 859 aa15.86■□□□□ 0.13
CLN3-242ENST00000635958 SOCS4Q8WXH5 440 aa15.86■□□□□ 0.13
CLN3-242ENST00000635958 NUDT12Q9BQG2 462 aa15.86■□□□□ 0.13
CLN3-242ENST00000635958 LRRC37A2A6NM11 1700 aa15.86■□□□□ 0.13
CLN3-242ENST00000635958 EML1O00423 815 aa15.85■□□□□ 0.13
CLN3-242ENST00000635958 TBC1D8O95759 1140 aa15.85■□□□□ 0.13
CLN3-242ENST00000635958 RPA1P27694 616 aa15.85■□□□□ 0.13
CLN3-242ENST00000635958 GRB10Q13322 594 aa15.85■□□□□ 0.13
CLN3-242ENST00000635958 NAALADL2Q58DX5 795 aa15.85■□□□□ 0.13
CLN3-242ENST00000635958 ARMCX2Q7L311 632 aa15.85■□□□□ 0.13
CLN3-242ENST00000635958 KCTD17Q8N5Z5 321 aa15.85■□□□□ 0.13
CLN3-242ENST00000635958 ERMNQ8TAM6 284 aa15.85■□□□□ 0.13
CLN3-242ENST00000635958 NPLOC4Q8TAT6 608 aa15.85■□□□□ 0.13
CLN3-242ENST00000635958 SNX29Q8TEQ0 813 aa15.85■□□□□ 0.13
CLN3-242ENST00000635958 CALML4Q96GE6 196 aa15.85■□□□□ 0.13
CLN3-242ENST00000635958 PNMA5Q96PV4 448 aa15.85■□□□□ 0.13
CLN3-242ENST00000635958 HSD17B14Q9BPX1 270 aa15.85■□□□□ 0.13
CLN3-242ENST00000635958 SDF4Q9BRK5 362 aa15.85■□□□□ 0.13
CLN3-242ENST00000635958 POLR3CQ9BUI4 534 aaPredicted RBP15.85■□□□□ 0.13
CLN3-242ENST00000635958 TNMDQ9H2S6 317 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms