RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 KIF18AQ8NI77 898 aa24.54■■□□□ 1.52
PNKP-220ENST00000627232 TUFT1Q9NNX1 390 aa24.54■■□□□ 1.52
PNKP-220ENST00000627232 GPRC5DQ9NZD1 345 aa24.54■■□□□ 1.52
PNKP-220ENST00000627232 PPP1R9AQ9ULJ8 1098 aa24.54■■□□□ 1.52
PNKP-220ENST00000627232 MEIS1O00470 390 aa24.53■■□□□ 1.52
PNKP-220ENST00000627232 FXR1P51114 621 aaKnown RBP eCLIP24.53■■□□□ 1.52
PNKP-220ENST00000627232 LRCH2Q5VUJ6 765 aa24.53■■□□□ 1.52
PNKP-220ENST00000627232 OTOP1Q7RTM1 612 aa24.53■■□□□ 1.52
PNKP-220ENST00000627232 KRT26Q7Z3Y9 468 aa24.53■■□□□ 1.52
PNKP-220ENST00000627232 CPLX3Q8WVH0 158 aa24.53■■□□□ 1.52
PNKP-220ENST00000627232 CLEC4DQ8WXI8 215 aa24.53■■□□□ 1.52
PNKP-220ENST00000627232 EIF2AK1Q9BQI3 630 aaKnown RBP24.53■■□□□ 1.52
PNKP-220ENST00000627232 EMILIN3Q9NT22 766 aa24.53■■□□□ 1.52
PNKP-220ENST00000627232 PRKCSHP14314 528 aaPredicted RBP24.52■■□□□ 1.52
PNKP-220ENST00000627232 VCAM1P19320 739 aa24.52■■□□□ 1.52
PNKP-220ENST00000627232 MTIF2P46199 727 aaKnown RBP24.52■■□□□ 1.52
PNKP-220ENST00000627232 MTMR2Q13614 643 aa24.52■■□□□ 1.52
PNKP-220ENST00000627232 ANGEL2Q5VTE6 544 aaKnown RBP24.52■■□□□ 1.52
PNKP-220ENST00000627232 GPC2Q8N158 579 aa24.52■■□□□ 1.52
PNKP-220ENST00000627232 TANGO6Q9C0B7 1094 aa24.52■■□□□ 1.52
PNKP-220ENST00000627232 PCDHA2Q9Y5H9 948 aa24.52■■□□□ 1.52
PNKP-220ENST00000627232 PHIPQ8WWQ0 1821 aa24.52■■□□□ 1.52
PNKP-220ENST00000627232 LOXHD1Q8IVV2 1947 aa24.51■■□□□ 1.51
PNKP-220ENST00000627232 EYA4O95677 639 aa24.51■■□□□ 1.51
PNKP-220ENST00000627232 KRT18P05783 430 aaKnown RBP24.51■■□□□ 1.51
PNKP-220ENST00000627232 ARSHQ5FYA8 562 aa24.51■■□□□ 1.51
PNKP-220ENST00000627232 NIPA1Q7RTP0 329 aa24.51■■□□□ 1.51
PNKP-220ENST00000627232 MXRA8Q9BRK3 442 aa24.51■■□□□ 1.51
PNKP-220ENST00000627232 NUP58Q9BVL2 599 aa24.51■■□□□ 1.51
PNKP-220ENST00000627232 WDR11Q9BZH6 1224 aa24.51■■□□□ 1.51
PNKP-220ENST00000627232 EML1O00423 815 aa24.51■■□□□ 1.51
PNKP-220ENST00000627232 ZBED4O75132 1171 aa24.51■■□□□ 1.51
PNKP-220ENST00000627232 FLOT1O75955 427 aa24.51■■□□□ 1.51
PNKP-220ENST00000627232 BCRP11274 1271 aa24.51■■□□□ 1.51
PNKP-220ENST00000627232 LMNB1P20700 586 aa24.51■■□□□ 1.51
PNKP-220ENST00000627232 BACE1P56817 501 aa24.51■■□□□ 1.51
PNKP-220ENST00000627232 ZCWPW2Q504Y3 356 aa24.51■■□□□ 1.51
PNKP-220ENST00000627232 TMTC1Q8IUR5 882 aa24.51■■□□□ 1.51
PNKP-220ENST00000627232 RETREG2Q8NC44 543 aa24.51■■□□□ 1.51
PNKP-220ENST00000627232 ZNF592Q92610 1267 aa24.51■■□□□ 1.51
PNKP-220ENST00000627232 IQCDQ96DY2 449 aa24.51■■□□□ 1.51
PNKP-220ENST00000627232 HSD17B14Q9BPX1 270 aa24.51■■□□□ 1.51
PNKP-220ENST00000627232 RPAP3Q9H6T3 665 aaPredicted RBP24.51■■□□□ 1.51
PNKP-220ENST00000627232 PICK1Q9NRD5 415 aa24.51■■□□□ 1.51
PNKP-220ENST00000627232 SBF1O95248 1867 aa24.5■■□□□ 1.51
PNKP-220ENST00000627232 GAS7O60861 476 aa24.5■■□□□ 1.51
PNKP-220ENST00000627232 PSMC6P62333 389 aa24.5■■□□□ 1.51
PNKP-220ENST00000627232 GIT2Q14161 759 aa24.5■■□□□ 1.51
PNKP-220ENST00000627232 UPF1Q92900 1129 aaKnown RBP eCLIP24.5■■□□□ 1.51
PNKP-220ENST00000627232 C12orf42Q96LP6 360 aa24.5■■□□□ 1.51
PNKP-220ENST00000627232 ERGIC2Q96RQ1 377 aa24.5■■□□□ 1.51
PNKP-220ENST00000627232 RIT2Q99578 217 aa24.5■■□□□ 1.51
PNKP-220ENST00000627232 NOC4LQ9BVI4 516 aaKnown RBP24.5■■□□□ 1.51
PNKP-220ENST00000627232 ABHD10Q9NUJ1 306 aa24.5■■□□□ 1.51
PNKP-220ENST00000627232 CTDP1Q9Y5B0 961 aaPredicted RBP24.5■■□□□ 1.51
PNKP-220ENST00000627232 FRMPD4Q14CM0 1322 aa24.49■■□□□ 1.51
PNKP-220ENST00000627232 B4DLN1 442 aa24.49■■□□□ 1.51
PNKP-220ENST00000627232 PTPRAP18433 802 aa24.49■■□□□ 1.51
PNKP-220ENST00000627232 ETF1P62495 437 aaKnown RBP24.49■■□□□ 1.51
PNKP-220ENST00000627232 UBXN2AP68543 259 aa24.49■■□□□ 1.51
PNKP-220ENST00000627232 TBC1D8BQ0IIM8 1120 aa24.49■■□□□ 1.51
PNKP-220ENST00000627232 SPP2Q13103 211 aa24.49■■□□□ 1.51
PNKP-220ENST00000627232 PABPC4Q13310 644 aaKnown RBP eCLIP24.49■■□□□ 1.51
PNKP-220ENST00000627232 LRRC41Q15345 812 aa24.49■■□□□ 1.51
PNKP-220ENST00000627232 HERC4Q5GLZ8 1057 aaPredicted RBP24.49■■□□□ 1.51
PNKP-220ENST00000627232 MIIPQ5JXC2 388 aa24.49■■□□□ 1.51
PNKP-220ENST00000627232 LRRC55Q6ZSA7 311 aa24.49■■□□□ 1.51
PNKP-220ENST00000627232 ZNF280CQ8ND82 737 aa24.49■■□□□ 1.51
PNKP-220ENST00000627232 TRPM4Q8TD43 1214 aa24.49■■□□□ 1.51
PNKP-220ENST00000627232 WRNIP1Q96S55 665 aa24.49■■□□□ 1.51
PNKP-220ENST00000627232 ZNF577Q9BSK1 485 aa24.49■■□□□ 1.51
PNKP-220ENST00000627232 TEKT3Q9BXF9 490 aa24.49■■□□□ 1.51
PNKP-220ENST00000627232 RAVER2Q9HCJ3 691 aaKnown RBP24.49■■□□□ 1.51
PNKP-220ENST00000627232 CAPN11Q9UMQ6 739 aa24.49■■□□□ 1.51
PNKP-220ENST00000627232 PHLPP2Q6ZVD8 1323 aa24.48■■□□□ 1.51
PNKP-220ENST00000627232 NPHP3-ACAD11A0A0J9YXS1 232 aa24.48■■□□□ 1.51
PNKP-220ENST00000627232 PES1O00541 588 aaKnown RBP24.48■■□□□ 1.51
PNKP-220ENST00000627232 NFIBO00712 420 aa24.48■■□□□ 1.51
PNKP-220ENST00000627232 CCDC175P0C221 793 aa24.48■■□□□ 1.51
PNKP-220ENST00000627232 ALAS1P13196 640 aa24.48■■□□□ 1.51
PNKP-220ENST00000627232 MAN2A1Q16706 1144 aa24.48■■□□□ 1.51
PNKP-220ENST00000627232 FKBP15Q5T1M5 1219 aa24.48■■□□□ 1.51
PNKP-220ENST00000627232 B3GNT9Q6UX72 402 aa24.48■■□□□ 1.51
PNKP-220ENST00000627232 TOGARAM2Q6ZUX3 1019 aa24.48■■□□□ 1.51
PNKP-220ENST00000627232 RLFQ13129 1914 aa24.48■■□□□ 1.51
PNKP-220ENST00000627232 SOWAHDA6NJG2 315 aa24.47■■□□□ 1.51
PNKP-220ENST00000627232 C19orf81C9J6K1 198 aa24.47■■□□□ 1.51
PNKP-220ENST00000627232 CTIFO43310 598 aaKnown RBP24.47■■□□□ 1.51
PNKP-220ENST00000627232 KRT9P35527 623 aa24.47■■□□□ 1.51
PNKP-220ENST00000627232 FKBP3Q00688 224 aaKnown RBP24.47■■□□□ 1.51
PNKP-220ENST00000627232 EPHA7Q15375 998 aa24.47■■□□□ 1.51
PNKP-220ENST00000627232 TRIM65Q6PJ69 517 aa24.47■■□□□ 1.51
PNKP-220ENST00000627232 CYP26C1Q6V0L0 522 aa24.47■■□□□ 1.51
PNKP-220ENST00000627232 PPP4R3CPQ6ZMV5 832 aa24.47■■□□□ 1.51
PNKP-220ENST00000627232 CPXCR1Q8N123 301 aa24.47■■□□□ 1.51
PNKP-220ENST00000627232 GLIS3Q8NEA6 775 aa24.47■■□□□ 1.51
PNKP-220ENST00000627232 CEP63Q96MT8 703 aa24.47■■□□□ 1.51
PNKP-220ENST00000627232 COL20A1Q9P218 1284 aa24.47■■□□□ 1.51
PNKP-220ENST00000627232 LUC7L2Q9Y383 392 aaKnown RBP24.47■■□□□ 1.51
PNKP-220ENST00000627232 ARP10275 920 aa24.46■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms