RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 SPATA33Q96N06 139 aa13.22□□□□□ -0.29
LINC00539-204ENST00000608957 IL23AQ9NPF7 189 aa13.22□□□□□ -0.29
LINC00539-204ENST00000608957 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.22□□□□□ -0.29
LINC00539-204ENST00000608957 V9GY48 417 aaPredicted RBP13.22□□□□□ -0.29
LINC00539-204ENST00000608957 SIP14410 1827 aa13.22□□□□□ -0.29
LINC00539-204ENST00000608957 GRXCR1A8MXD5 290 aa13.21□□□□□ -0.29
LINC00539-204ENST00000608957 PFKFB2O60825 505 aa13.21□□□□□ -0.29
LINC00539-204ENST00000608957 TGFB3P10600 412 aa13.21□□□□□ -0.29
LINC00539-204ENST00000608957 SMAD3P84022 425 aaKnown RBP13.21□□□□□ -0.29
LINC00539-204ENST00000608957 STK3Q13188 491 aa13.21□□□□□ -0.29
LINC00539-204ENST00000608957 MFSD10Q14728 455 aa13.21□□□□□ -0.29
LINC00539-204ENST00000608957 ZNF274Q96GC6 653 aaPredicted RBP13.21□□□□□ -0.29
LINC00539-204ENST00000608957 PGBD1Q96JS3 809 aa13.21□□□□□ -0.29
LINC00539-204ENST00000608957 FAM161BQ96MY7 647 aa13.21□□□□□ -0.29
LINC00539-204ENST00000608957 GUCD1Q96NT3 240 aa13.21□□□□□ -0.29
LINC00539-204ENST00000608957 C16orf70Q9BSU1 422 aa13.21□□□□□ -0.29
LINC00539-204ENST00000608957 ALG1Q9BT22 464 aa13.21□□□□□ -0.29
LINC00539-204ENST00000608957 TTYH1Q9H313 450 aaPredicted RBP13.21□□□□□ -0.29
LINC00539-204ENST00000608957 CHMP5Q9NZZ3 219 aa13.21□□□□□ -0.29
LINC00539-204ENST00000608957 CXXC1Q9P0U4 656 aaPredicted RBP13.21□□□□□ -0.29
LINC00539-204ENST00000608957 HDAC6Q9UBN7 1215 aa13.21□□□□□ -0.29
LINC00539-204ENST00000608957 NAP1L2Q9ULW6 460 aaPredicted RBP13.21□□□□□ -0.29
LINC00539-204ENST00000608957 PCDHA6Q9UN73 950 aa13.21□□□□□ -0.29
LINC00539-204ENST00000608957 PCDHA8Q9Y5H6 950 aa13.21□□□□□ -0.29
LINC00539-204ENST00000608957 LOXHD1Q8IVV2 1947 aa13.21□□□□□ -0.3
LINC00539-204ENST00000608957 FIBPO43427 364 aa13.2□□□□□ -0.3
LINC00539-204ENST00000608957 ATP9AO75110 1047 aa13.2□□□□□ -0.3
LINC00539-204ENST00000608957 STAM2O75886 525 aa13.2□□□□□ -0.3
LINC00539-204ENST00000608957 SUPT20HL2P0C7V6 817 aa13.2□□□□□ -0.3
LINC00539-204ENST00000608957 ITGB5P18084 799 aa13.2□□□□□ -0.3
LINC00539-204ENST00000608957 METAP2P50579 478 aaKnown RBP eCLIP13.2□□□□□ -0.3
LINC00539-204ENST00000608957 ZNF200P98182 395 aaPredicted RBP13.2□□□□□ -0.3
LINC00539-204ENST00000608957 NTRK3Q16288 839 aa13.2□□□□□ -0.3
LINC00539-204ENST00000608957 PKN1Q16512 942 aa13.2□□□□□ -0.3
LINC00539-204ENST00000608957 PTGISQ16647 500 aa13.2□□□□□ -0.3
LINC00539-204ENST00000608957 KIAA0753Q2KHM9 967 aa13.2□□□□□ -0.3
LINC00539-204ENST00000608957 CYFIP1Q7L576 1253 aa13.2□□□□□ -0.3
LINC00539-204ENST00000608957 HERVK_113Q902F9 699 aa13.2□□□□□ -0.3
LINC00539-204ENST00000608957 WNT8BQ93098 351 aa13.2□□□□□ -0.3
LINC00539-204ENST00000608957 RIC8AQ9NPQ8 531 aa13.2□□□□□ -0.3
LINC00539-204ENST00000608957 GTF2IRD1Q9UHL9 959 aa13.2□□□□□ -0.3
LINC00539-204ENST00000608957 UBIAD1Q9Y5Z9 338 aa13.2□□□□□ -0.3
LINC00539-204ENST00000608957 MICAL3Q7RTP6 2002 aa13.2□□□□□ -0.3
LINC00539-204ENST00000608957 COL6A3P12111 3177 aa13.19□□□□□ -0.3
LINC00539-204ENST00000608957 PPFIA3O75145 1194 aa13.19□□□□□ -0.3
LINC00539-204ENST00000608957 LGALS2P05162 132 aa13.19□□□□□ -0.3
LINC00539-204ENST00000608957 KCNA2P16389 499 aa13.19□□□□□ -0.3
LINC00539-204ENST00000608957 PDIA3P30101 505 aaKnown RBP13.19□□□□□ -0.3
LINC00539-204ENST00000608957 CLK2P49760 499 aaKnown RBP13.19□□□□□ -0.3
LINC00539-204ENST00000608957 NAPAP54920 295 aa13.19□□□□□ -0.3
LINC00539-204ENST00000608957 SCRN1Q12765 414 aa13.19□□□□□ -0.3
LINC00539-204ENST00000608957 GPNMBQ14956 572 aa13.19□□□□□ -0.3
LINC00539-204ENST00000608957 PPP1R18Q6NYC8 613 aa13.19□□□□□ -0.3
LINC00539-204ENST00000608957 XRRA1Q6P2D8 792 aa13.19□□□□□ -0.3
LINC00539-204ENST00000608957 PSRC1Q6PGN9 363 aaPredicted RBP13.19□□□□□ -0.3
LINC00539-204ENST00000608957 METTL7BQ6UX53 244 aa13.19□□□□□ -0.3
LINC00539-204ENST00000608957 GPR20Q99678 358 aa13.19□□□□□ -0.3
LINC00539-204ENST00000608957 MLXIPQ9HAP2 919 aa13.19□□□□□ -0.3
LINC00539-204ENST00000608957 TMEM260Q9NX78 707 aa13.19□□□□□ -0.3
LINC00539-204ENST00000608957 BARHL2Q9NY43 387 aa13.19□□□□□ -0.3
LINC00539-204ENST00000608957 SMC3Q9UQE7 1217 aa13.19□□□□□ -0.3
LINC00539-204ENST00000608957 MYH9P35579 1960 aaKnown RBP13.18□□□□□ -0.3
LINC00539-204ENST00000608957 PPFIA4O75335 1185 aa13.18□□□□□ -0.3
LINC00539-204ENST00000608957 IQCF3P0C7M6 154 aa13.18□□□□□ -0.3
LINC00539-204ENST00000608957 PBX2P40425 430 aa13.18□□□□□ -0.3
LINC00539-204ENST00000608957 PFKFB3Q16875 520 aaPredicted RBP13.18□□□□□ -0.3
LINC00539-204ENST00000608957 TRIM71Q2Q1W2 868 aaKnown RBP13.18□□□□□ -0.3
LINC00539-204ENST00000608957 GNPTABQ3T906 1256 aa13.18□□□□□ -0.3
LINC00539-204ENST00000608957 OTOP2Q7RTS6 562 aa13.18□□□□□ -0.3
LINC00539-204ENST00000608957 DEFB128Q7Z7B8 93 aa13.18□□□□□ -0.3
LINC00539-204ENST00000608957 TRIM50Q86XT4 487 aa13.18□□□□□ -0.3
LINC00539-204ENST00000608957 CYP2W1Q8TAV3 490 aa13.18□□□□□ -0.3
LINC00539-204ENST00000608957 PHKBQ93100 1093 aa13.18□□□□□ -0.3
LINC00539-204ENST00000608957 GPRASP2Q96D09 838 aa13.18□□□□□ -0.3
LINC00539-204ENST00000608957 KATNAL1Q9BW62 490 aa13.18□□□□□ -0.3
LINC00539-204ENST00000608957 SEMA6BQ9H3T3 888 aa13.18□□□□□ -0.3
LINC00539-204ENST00000608957 NCOA5Q9HCD5 579 aaKnown RBP13.18□□□□□ -0.3
LINC00539-204ENST00000608957 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.17□□□□□ -0.3
LINC00539-204ENST00000608957 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.17□□□□□ -0.3
LINC00539-204ENST00000608957 SMCO2A6NFE2 343 aa13.17□□□□□ -0.3
LINC00539-204ENST00000608957 hCG_1984214I3L0E3 225 aa13.17□□□□□ -0.3
LINC00539-204ENST00000608957 PITPNM1O00562 1244 aa13.17□□□□□ -0.3
LINC00539-204ENST00000608957 PRPF3O43395 683 aaKnown RBP13.17□□□□□ -0.3
LINC00539-204ENST00000608957 FGBP02675 491 aa13.17□□□□□ -0.3
LINC00539-204ENST00000608957 SCG2P13521 617 aa13.17□□□□□ -0.3
LINC00539-204ENST00000608957 HOXC8P31273 242 aa13.17□□□□□ -0.3
LINC00539-204ENST00000608957 ADCY7P51828 1080 aa13.17□□□□□ -0.3
LINC00539-204ENST00000608957 CCT2P78371 535 aaKnown RBP13.17□□□□□ -0.3
LINC00539-204ENST00000608957 SP4Q02446 784 aa13.17□□□□□ -0.3
LINC00539-204ENST00000608957 RBL2Q08999 1139 aa13.17□□□□□ -0.3
LINC00539-204ENST00000608957 NEDD9Q14511 834 aa13.17□□□□□ -0.3
LINC00539-204ENST00000608957 TCTN1Q2MV58 587 aa13.17□□□□□ -0.3
LINC00539-204ENST00000608957 ZNF697Q5TEC3 545 aa13.17□□□□□ -0.3
LINC00539-204ENST00000608957 TRAF7Q6Q0C0 670 aa13.17□□□□□ -0.3
LINC00539-204ENST00000608957 ZNF713Q8N859 430 aaPredicted RBP13.17□□□□□ -0.3
LINC00539-204ENST00000608957 SENP7Q9BQF6 1050 aa13.17□□□□□ -0.3
LINC00539-204ENST00000608957 LLPHQ9BRT6 129 aaKnown RBP13.17□□□□□ -0.3
LINC00539-204ENST00000608957 ANO3Q9BYT9 981 aa13.17□□□□□ -0.3
LINC00539-204ENST00000608957 JADE2Q9NQC1 790 aa13.17□□□□□ -0.3
LINC00539-204ENST00000608957 CDH23Q9H251 3354 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms