RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 PSEN2P49810 448 aa22.03■■□□□ 1.12
UPF1-212ENST00000601689 SP4Q02446 784 aa22.03■■□□□ 1.12
UPF1-212ENST00000601689 MFSD10Q14728 455 aa22.03■■□□□ 1.12
UPF1-212ENST00000601689 TMEM199Q8N511 208 aa22.03■■□□□ 1.12
UPF1-212ENST00000601689 SEPT1Q8WYJ6 367 aa22.03■■□□□ 1.12
UPF1-212ENST00000601689 TNPO1Q92973 898 aaKnown RBP22.03■■□□□ 1.12
UPF1-212ENST00000601689 KCNH7Q9NS40 1196 aa22.03■■□□□ 1.12
UPF1-212ENST00000601689 TRIM43BA6NCK2 446 aa22.02■■□□□ 1.12
UPF1-212ENST00000601689 B4GALT4O60513 344 aa22.02■■□□□ 1.12
UPF1-212ENST00000601689 F2P00734 622 aa22.02■■□□□ 1.12
UPF1-212ENST00000601689 CD4P01730 458 aa22.02■■□□□ 1.12
UPF1-212ENST00000601689 USP11P51784 963 aa22.02■■□□□ 1.12
UPF1-212ENST00000601689 SEMA3FQ13275 785 aa22.02■■□□□ 1.12
UPF1-212ENST00000601689 KIAA0753Q2KHM9 967 aa22.02■■□□□ 1.12
UPF1-212ENST00000601689 SH3RF1Q7Z6J0 888 aa22.02■■□□□ 1.12
UPF1-212ENST00000601689 PLA2G4DQ86XP0 818 aa22.02■■□□□ 1.12
UPF1-212ENST00000601689 CCDC155Q8N6L0 562 aa22.02■■□□□ 1.12
UPF1-212ENST00000601689 DAGLBQ8NCG7 672 aa22.02■■□□□ 1.12
UPF1-212ENST00000601689 BADQ92934 168 aa22.02■■□□□ 1.12
UPF1-212ENST00000601689 TRIM43Q96BQ3 446 aaPredicted RBP22.02■■□□□ 1.12
UPF1-212ENST00000601689 ALG1Q9BT22 464 aa22.02■■□□□ 1.12
UPF1-212ENST00000601689 HIPK3Q9H422 1215 aa22.02■■□□□ 1.12
UPF1-212ENST00000601689 JPH1Q9HDC5 661 aaPredicted RBP22.02■■□□□ 1.12
UPF1-212ENST00000601689 PKD2L1Q9P0L9 805 aa22.02■■□□□ 1.12
UPF1-212ENST00000601689 DOCK5Q9H7D0 1870 aa22.02■■□□□ 1.12
UPF1-212ENST00000601689 KAT6AQ92794 2004 aa22.02■■□□□ 1.12
UPF1-212ENST00000601689 GRIN2DO15399 1336 aa22.02■■□□□ 1.12
UPF1-212ENST00000601689 CCDC194A0A1B0GVG4 234 aa22.01■■□□□ 1.11
UPF1-212ENST00000601689 H3BRB1 525 aa22.01■■□□□ 1.11
UPF1-212ENST00000601689 MEIS1O00470 390 aa22.01■■□□□ 1.11
UPF1-212ENST00000601689 HOXD8P13378 290 aaPredicted RBP22.01■■□□□ 1.11
UPF1-212ENST00000601689 KCNA2P16389 499 aa22.01■■□□□ 1.11
UPF1-212ENST00000601689 HABP4Q5JVS0 413 aaKnown RBP22.01■■□□□ 1.11
UPF1-212ENST00000601689 KRT25Q7Z3Z0 450 aa22.01■■□□□ 1.11
UPF1-212ENST00000601689 SESTD1Q86VW0 696 aa22.01■■□□□ 1.11
UPF1-212ENST00000601689 GPR20Q99678 358 aa22.01■■□□□ 1.11
UPF1-212ENST00000601689 LLPHQ9BRT6 129 aaKnown RBP22.01■■□□□ 1.11
UPF1-212ENST00000601689 TUT1Q9H6E5 874 aaKnown RBP22.01■■□□□ 1.11
UPF1-212ENST00000601689 SLC9A2Q9UBY0 812 aa22.01■■□□□ 1.11
UPF1-212ENST00000601689 TBX21Q9UL17 535 aa22.01■■□□□ 1.11
UPF1-212ENST00000601689 NFASCO94856 1347 aa22.01■■□□□ 1.11
UPF1-212ENST00000601689 LGALS2P05162 132 aa22■■□□□ 1.11
UPF1-212ENST00000601689 ZNF286BP0CG31 522 aa22■■□□□ 1.11
UPF1-212ENST00000601689 GNAT1P11488 350 aa22■■□□□ 1.11
UPF1-212ENST00000601689 MCM2P49736 904 aa22■■□□□ 1.11
UPF1-212ENST00000601689 FPGSQ05932 587 aa22■■□□□ 1.11
UPF1-212ENST00000601689 PPIGQ13427 754 aaKnown RBP eCLIP22■■□□□ 1.115e-7■■□□□ 11.4
UPF1-212ENST00000601689 BFSP2Q13515 415 aa22■■□□□ 1.11
UPF1-212ENST00000601689 UTP14CQ5TAP6 766 aaKnown RBP22■■□□□ 1.11
UPF1-212ENST00000601689 MFSD5Q6N075 450 aa22■■□□□ 1.11
UPF1-212ENST00000601689 TDHQ8IZJ6 230 aa22■■□□□ 1.11
UPF1-212ENST00000601689 RETREG2Q8NC44 543 aa22■■□□□ 1.11
UPF1-212ENST00000601689 RASGRP4Q8TDF6 673 aa22■■□□□ 1.11
UPF1-212ENST00000601689 TRPV6Q9H1D0 765 aa22■■□□□ 1.11
UPF1-212ENST00000601689 AZI2Q9H6S1 392 aa22■■□□□ 1.11
UPF1-212ENST00000601689 ATP9AO75110 1047 aa21.99■■□□□ 1.11
UPF1-212ENST00000601689 HMGN5P82970 282 aaKnown RBP21.99■■□□□ 1.11
UPF1-212ENST00000601689 NONOQ15233 471 aaKnown RBP eCLIP21.99■■□□□ 1.11
UPF1-212ENST00000601689 PTGISQ16647 500 aa21.99■■□□□ 1.11
UPF1-212ENST00000601689 FAM184AQ8NB25 1140 aa21.99■■□□□ 1.11
UPF1-212ENST00000601689 GLG1Q92896 1179 aa21.99■■□□□ 1.11
UPF1-212ENST00000601689 AIFM3Q96NN9 605 aa21.99■■□□□ 1.11
UPF1-212ENST00000601689 ZNF577Q9BSK1 485 aa21.99■■□□□ 1.11
UPF1-212ENST00000601689 PHF20Q9BVI0 1012 aa21.99■■□□□ 1.11
UPF1-212ENST00000601689 PPP1R12CQ9BZL4 782 aa21.99■■□□□ 1.11
UPF1-212ENST00000601689 AGO4Q9HCK5 861 aaKnown RBP21.99■■□□□ 1.11
UPF1-212ENST00000601689 TBC1D22BQ9NU19 505 aa21.99■■□□□ 1.11
UPF1-212ENST00000601689 LARGE1O95461 756 aa21.98■■□□□ 1.11
UPF1-212ENST00000601689 CTDNEP1O95476 244 aa21.98■■□□□ 1.11
UPF1-212ENST00000601689 CIITAP33076 1130 aa21.98■■□□□ 1.11
UPF1-212ENST00000601689 TCF7P36402 384 aaPredicted RBP21.98■■□□□ 1.11
UPF1-212ENST00000601689 SAFBQ15424 915 aaKnown RBP eCLIP21.98■■□□□ 1.11
UPF1-212ENST00000601689 PRR16Q569H4 304 aa21.98■■□□□ 1.11
UPF1-212ENST00000601689 CCDC83Q8IWF9 413 aa21.98■■□□□ 1.11
UPF1-212ENST00000601689 NSUN7Q8NE18 718 aaKnown RBP21.98■■□□□ 1.11
UPF1-212ENST00000601689 CYP2W1Q8TAV3 490 aa21.98■■□□□ 1.11
UPF1-212ENST00000601689 TBCKQ8TEA7 893 aa21.98■■□□□ 1.11
UPF1-212ENST00000601689 KAT2BQ92831 832 aa21.98■■□□□ 1.11
UPF1-212ENST00000601689 KIF2CQ99661 725 aa21.98■■□□□ 1.11
UPF1-212ENST00000601689 NAP1L4Q99733 375 aaKnown RBP21.98■■□□□ 1.11
UPF1-212ENST00000601689 SMARCAD1Q9H4L7 1026 aa21.98■■□□□ 1.11
UPF1-212ENST00000601689 TRMT13Q9NUP7 481 aaKnown RBP21.98■■□□□ 1.11
UPF1-212ENST00000601689 GTF2IRD1Q9UHL9 959 aa21.98■■□□□ 1.11
UPF1-212ENST00000601689 KCNJ14Q9UNX9 436 aa21.98■■□□□ 1.11
UPF1-212ENST00000601689 KIF3AQ9Y496 699 aa21.98■■□□□ 1.11
UPF1-212ENST00000601689 LTBP2Q14767 1821 aa21.98■■□□□ 1.11
UPF1-212ENST00000601689 HAS3O00219 553 aa21.97■■□□□ 1.11
UPF1-212ENST00000601689 IPO5O00410 1097 aaKnown RBP21.97■■□□□ 1.11
UPF1-212ENST00000601689 ARP10275 920 aa21.97■■□□□ 1.11
UPF1-212ENST00000601689 KRT2P35908 639 aa21.97■■□□□ 1.11
UPF1-212ENST00000601689 RPUSD2Q8IZ73 545 aaKnown RBP21.97■■□□□ 1.11
UPF1-212ENST00000601689 TBC1D32Q96NH3 1257 aa21.97■■□□□ 1.11
UPF1-212ENST00000601689 C16orf70Q9BSU1 422 aa21.97■■□□□ 1.11
UPF1-212ENST00000601689 PRO3102Q9H379 93 aa21.97■■□□□ 1.11
UPF1-212ENST00000601689 ERAP1Q9NZ08 941 aa21.97■■□□□ 1.11
UPF1-212ENST00000601689 HDAC6Q9UBN7 1215 aa21.97■■□□□ 1.11
UPF1-212ENST00000601689 FAM86B1E9PN63 330 aa21.96■■□□□ 1.11
UPF1-212ENST00000601689 FAM86B2P0C5J1 330 aa21.96■■□□□ 1.11
UPF1-212ENST00000601689 CAGE1Q8TC20 777 aa21.96■■□□□ 1.11
UPF1-212ENST00000601689 CRYGNQ8WXF5 182 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms