RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 SMC5Q8IY18 1101 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 MYOCDQ8IZQ8 938 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 SAMD3Q8N6K7 520 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 PABPC5Q96DU9 382 aaKnown RBP7.12□□□□□ -1.27
VRK3-220ENST00000600259 SPATA33Q96N06 139 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 SAMD11Q96NU1 681 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 CRBNQ96SW2 442 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 AMNQ9BXJ7 453 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 IL25Q9H293 177 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 TUT1Q9H6E5 874 aaKnown RBP7.12□□□□□ -1.27
VRK3-220ENST00000600259 RIOX1Q9H6W3 641 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 KAT14Q9H8E8 782 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 MAD2L2Q9UI95 211 aa7.12□□□□□ -1.27
VRK3-220ENST00000600259 C17orf102A2RUQ5 167 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 SPATA31C2B4DYI2 1134 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 KLRF2D3W0D1 207 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 ZBTB5O15062 677 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 CYTH3O43739 400 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 AMHP03971 560 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 LGALS2P05162 132 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 SMIM10L2AP0DMW4 78 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 SMIM10L2BP0DMW5 78 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 MYCLP12524 364 aaPredicted RBP7.11□□□□□ -1.27
VRK3-220ENST00000600259 HOXA13P31271 388 aaPredicted RBP7.11□□□□□ -1.27
VRK3-220ENST00000600259 ZP2Q05996 745 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 DLX2Q07687 328 aaPredicted RBP7.11□□□□□ -1.27
VRK3-220ENST00000600259 GPM6BQ13491 265 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 PUS10Q3MIT2 529 aaKnown RBP7.11□□□□□ -1.27
VRK3-220ENST00000600259 ALYREFQ86V81 257 aaKnown RBP7.11□□□□□ -1.27
VRK3-220ENST00000600259 TMEM192Q8IY95 271 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 CRIPAKQ8N1N5 446 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 BANK1Q8NDB2 785 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 ATP6V0A1Q93050 837 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 RILPL2Q969X0 211 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 INPP4AQ96PE3 977 aaPredicted RBP7.11□□□□□ -1.27
VRK3-220ENST00000600259 DSCC1Q9BVC3 393 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 LNPKQ9C0E8 428 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 EHMT1Q9H9B1 1298 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 RC3H2Q9HBD1 1191 aaKnown RBP7.11□□□□□ -1.27
VRK3-220ENST00000600259 SENP2Q9HC62 589 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 SETD4Q9NVD3 440 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 CTNNA3Q9UI47 895 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 PCDHA1Q9Y5I3 950 aa7.11□□□□□ -1.27
VRK3-220ENST00000600259 COL4A4P53420 1690 aaPredicted RBP7.11□□□□□ -1.27
VRK3-220ENST00000600259 FRMPD4Q14CM0 1322 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 KIAA1217Q5T5P2 1943 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 TRIM6-TRIM34B2RNG4 842 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 C5orf67F2Z3F1 127 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 ENPP3O14638 875 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 GRM6O15303 877 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 DCXO43602 365 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 CAND2O75155 1236 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 UPP2O95045 317 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 CHRNA1P02708 482 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 ALADP13716 330 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 IRS1P35568 1242 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 BMPR1AP36894 532 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 MFAP1P55081 439 aaKnown RBP7.1□□□□□ -1.27
VRK3-220ENST00000600259 RRP1P56182 461 aaKnown RBP7.1□□□□□ -1.27
VRK3-220ENST00000600259 CAMK1Q14012 370 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 PTPROQ16827 1216 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 CWC27Q6UX04 472 aaKnown RBP7.1□□□□□ -1.27
VRK3-220ENST00000600259 RPAINQ86UA6 219 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 SEPT8Q92599 483 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 CLP1Q92989 425 aaKnown RBP7.1□□□□□ -1.27
VRK3-220ENST00000600259 ZNF689Q96CS4 500 aaPredicted RBP7.1□□□□□ -1.27
VRK3-220ENST00000600259 FBXL18Q96ME1 805 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 PIGSQ96S52 555 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 GPR20Q99678 358 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 USP26Q9BXU7 913 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 MLXIPQ9HAP2 919 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 PRKAG3Q9UGI9 489 aa7.1□□□□□ -1.27
VRK3-220ENST00000600259 SUPT16HQ9Y5B9 1047 aaKnown RBP7.1□□□□□ -1.27
VRK3-220ENST00000600259 WDFY4Q6ZS81 3184 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 GCOM1H8Y6P7 765 aaPredicted RBP7.09□□□□□ -1.27
VRK3-220ENST00000600259 DHX16O60231 1041 aaKnown RBP7.09□□□□□ -1.27
VRK3-220ENST00000600259 IGHDP01880 384 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 RB1P06400 928 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 POLR2MP0CAP2 368 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 CCND2P30279 289 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 SSTR3P32745 418 aaPredicted RBP7.09□□□□□ -1.27
VRK3-220ENST00000600259 GTF2F1P35269 517 aaKnown RBP eCLIP7.09□□□□□ -1.27
VRK3-220ENST00000600259 NHLH1Q02575 133 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 MGAT3Q09327 533 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 HYAL1Q12794 435 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 TROAPQ12815 778 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 GRM4Q14833 912 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 SMAD2Q15796 467 aaKnown RBP7.09□□□□□ -1.27
VRK3-220ENST00000600259 TIGD5Q53EQ6 642 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 IFIT1BQ5T764 474 aaKnown RBP7.09□□□□□ -1.27
VRK3-220ENST00000600259 METTL7BQ6UX53 244 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 CYFIP1Q7L576 1253 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 RTN4RL1Q86UN2 441 aaPredicted RBP7.09□□□□□ -1.27
VRK3-220ENST00000600259 CHD1LQ86WJ1 897 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 FCHSD1Q86WN1 690 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 TRIM50Q86XT4 487 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 ADHFE1Q8IWW8 467 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 IL17RAQ96F46 866 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 YME1L1Q96TA2 773 aa7.09□□□□□ -1.27
VRK3-220ENST00000600259 SENP7Q9BQF6 1050 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms