RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 PDCP20941 246 aa20.66■□□□□ 0.9
LIG1-216ENST00000598938 CYP3A7P24462 503 aa20.66■□□□□ 0.9
LIG1-216ENST00000598938 U2AF2P26368 475 aaKnown RBP eCLIP20.66■□□□□ 0.9
LIG1-216ENST00000598938 CST5P28325 142 aaPredicted RBP20.66■□□□□ 0.9
LIG1-216ENST00000598938 SMAD3P84022 425 aaKnown RBP20.66■□□□□ 0.9
LIG1-216ENST00000598938 ARHGAP1Q07960 439 aa20.66■□□□□ 0.9
LIG1-216ENST00000598938 C1orf53Q5VUE5 145 aa20.66■□□□□ 0.9
LIG1-216ENST00000598938 MOXD1Q6UVY6 613 aa20.66■□□□□ 0.9
LIG1-216ENST00000598938 NEK8Q86SG6 692 aa20.66■□□□□ 0.9
LIG1-216ENST00000598938 KLHDC9Q8NEP7 349 aa20.66■□□□□ 0.9
LIG1-216ENST00000598938 OR6J1Q8NGC5 347 aa20.66■□□□□ 0.9
LIG1-216ENST00000598938 EMID1Q96A84 441 aaPredicted RBP20.66■□□□□ 0.9
LIG1-216ENST00000598938 MBOAT7Q96N66 472 aa20.66■□□□□ 0.9
LIG1-216ENST00000598938 SENP7Q9BQF6 1050 aa20.66■□□□□ 0.9
LIG1-216ENST00000598938 AP5M1Q9H0R1 490 aa20.66■□□□□ 0.9
LIG1-216ENST00000598938 SPC25Q9HBM1 224 aa20.66■□□□□ 0.9
LIG1-216ENST00000598938 KCNH7Q9NS40 1196 aa20.66■□□□□ 0.9
LIG1-216ENST00000598938 MYADML2A6NDP7 307 aa20.65■□□□□ 0.9
LIG1-216ENST00000598938 KIF28PB7ZC32 967 aa20.65■□□□□ 0.9
LIG1-216ENST00000598938 H3BQV1 296 aa20.65■□□□□ 0.9
LIG1-216ENST00000598938 ARP10275 920 aa20.65■□□□□ 0.9
LIG1-216ENST00000598938 KCNA2P16389 499 aa20.65■□□□□ 0.9
LIG1-216ENST00000598938 IRX5P78411 483 aaPredicted RBP20.65■□□□□ 0.9
LIG1-216ENST00000598938 SETQ01105 290 aaPredicted RBP20.65■□□□□ 0.9
LIG1-216ENST00000598938 SLC39A5Q6ZMH5 540 aa20.65■□□□□ 0.9
LIG1-216ENST00000598938 RNF180Q86T96 592 aa20.65■□□□□ 0.9
LIG1-216ENST00000598938 PLA2G4DQ86XP0 818 aa20.65■□□□□ 0.9
LIG1-216ENST00000598938 NOSTRINQ8IVI9 506 aa20.65■□□□□ 0.9
LIG1-216ENST00000598938 LENG9Q96B70 501 aa20.65■□□□□ 0.9
LIG1-216ENST00000598938 FAM161BQ96MY7 647 aa20.65■□□□□ 0.9
LIG1-216ENST00000598938 ATP11BQ9Y2G3 1177 aa20.65■□□□□ 0.9
LIG1-216ENST00000598938 VCANP13611 3396 aa20.65■□□□□ 0.9
LIG1-216ENST00000598938 EYSQ5T1H1 3165 aa20.65■□□□□ 0.9
LIG1-216ENST00000598938 TMEM265A0A087WTH1 108 aa20.64■□□□□ 0.89
LIG1-216ENST00000598938 ATP9AO75110 1047 aa20.64■□□□□ 0.89
LIG1-216ENST00000598938 TDP2O95551 362 aa20.64■□□□□ 0.89
LIG1-216ENST00000598938 GGPS1O95749 300 aa20.64■□□□□ 0.89
LIG1-216ENST00000598938 HSP90AA1P07900 732 aaKnown RBP20.64■□□□□ 0.89
LIG1-216ENST00000598938 C6orf222P0C671 652 aaPredicted RBP20.64■□□□□ 0.89
LIG1-216ENST00000598938 BECN1Q14457 450 aa20.64■□□□□ 0.89
LIG1-216ENST00000598938 NEDD9Q14511 834 aa20.64■□□□□ 0.89
LIG1-216ENST00000598938 CELF3Q5SZQ8 465 aaKnown RBP20.64■□□□□ 0.89
LIG1-216ENST00000598938 MYSM1Q5VVJ2 828 aa20.64■□□□□ 0.89
LIG1-216ENST00000598938 CCSAPQ6IQ19 270 aaPredicted RBP20.64■□□□□ 0.89
LIG1-216ENST00000598938 DHX37Q8IY37 1157 aaKnown RBP20.64■□□□□ 0.89
LIG1-216ENST00000598938 CDX2Q99626 313 aaPredicted RBP20.64■□□□□ 0.89
LIG1-216ENST00000598938 AGO4Q9HCK5 861 aaKnown RBP20.64■□□□□ 0.89
LIG1-216ENST00000598938 GCFC2P16383 781 aaKnown RBP20.63■□□□□ 0.89
LIG1-216ENST00000598938 SYT1P21579 422 aa20.63■□□□□ 0.89
LIG1-216ENST00000598938 LAMC2Q13753 1193 aa20.63■□□□□ 0.89
LIG1-216ENST00000598938 GNL2Q13823 731 aaKnown RBP20.63■□□□□ 0.89
LIG1-216ENST00000598938 SHHQ15465 462 aa20.63■□□□□ 0.89
LIG1-216ENST00000598938 FSCN1Q16658 493 aaKnown RBP20.63■□□□□ 0.89
LIG1-216ENST00000598938 LETM2Q2VYF4 491 aa20.63■□□□□ 0.89
LIG1-216ENST00000598938 Q4G0T1 1027 aa20.63■□□□□ 0.89
LIG1-216ENST00000598938 PRR16Q569H4 304 aa20.63■□□□□ 0.89
LIG1-216ENST00000598938 PPP4R3AQ6IN85 833 aa20.63■□□□□ 0.89
LIG1-216ENST00000598938 GIMAP8Q8ND71 665 aaPredicted RBP20.63■□□□□ 0.89
LIG1-216ENST00000598938 TSEN34Q9BSV6 310 aaKnown RBP20.63■□□□□ 0.89
LIG1-216ENST00000598938 BCAS3Q9H6U6 928 aa20.63■□□□□ 0.89
LIG1-216ENST00000598938 A6NJR5 290 aa20.62■□□□□ 0.89
LIG1-216ENST00000598938 CPT1AP50416 773 aa20.62■□□□□ 0.89
LIG1-216ENST00000598938 BEX3Q00994 111 aa20.62■□□□□ 0.89
LIG1-216ENST00000598938 MAFAQ8NHW3 353 aaPredicted RBP20.62■□□□□ 0.89
LIG1-216ENST00000598938 NAP1L4Q99733 375 aaKnown RBP20.62■□□□□ 0.89
LIG1-216ENST00000598938 SEMA6BQ9H3T3 888 aa20.62■□□□□ 0.89
LIG1-216ENST00000598938 NFASCO94856 1347 aa20.61■□□□□ 0.89
LIG1-216ENST00000598938 MYCNP04198 464 aaPredicted RBP20.61■□□□□ 0.89
LIG1-216ENST00000598938 ITGB3BPQ13352 177 aaPredicted RBP20.61■□□□□ 0.89
LIG1-216ENST00000598938 KCNA10Q16322 511 aa20.61■□□□□ 0.89
LIG1-216ENST00000598938 GNASQ5JWF2 1037 aa20.61■□□□□ 0.89
LIG1-216ENST00000598938 MCTP1Q6DN14 999 aa20.61■□□□□ 0.89
LIG1-216ENST00000598938 METTL7BQ6UX53 244 aa20.61■□□□□ 0.89
LIG1-216ENST00000598938 CYFIP1Q7L576 1253 aa20.61■□□□□ 0.89
LIG1-216ENST00000598938 PCSK9Q8NBP7 692 aaKnown RBP20.61■□□□□ 0.89
LIG1-216ENST00000598938 PPTC7Q8NI37 304 aa20.61■□□□□ 0.89
LIG1-216ENST00000598938 AFG1LQ8WV93 481 aa20.61■□□□□ 0.89
LIG1-216ENST00000598938 MLXIPQ9HAP2 919 aa20.61■□□□□ 0.89
LIG1-216ENST00000598938 PDLIM7Q9NR12 457 aa20.61■□□□□ 0.89
LIG1-216ENST00000598938 PKD2L1Q9P0L9 805 aa20.61■□□□□ 0.89
LIG1-216ENST00000598938 DDX25Q9UHL0 483 aaKnown RBP20.61■□□□□ 0.89
LIG1-216ENST00000598938 PHF24Q9UPV7 400 aa20.61■□□□□ 0.89
LIG1-216ENST00000598938 VPS37CA5D8V6 355 aaPredicted RBP20.6■□□□□ 0.89
LIG1-216ENST00000598938 MOXD2PA6NHM9 499 aa20.6■□□□□ 0.89
LIG1-216ENST00000598938 WNT7AO00755 349 aa20.6■□□□□ 0.89
LIG1-216ENST00000598938 MSH4O15457 936 aa20.6■□□□□ 0.89
LIG1-216ENST00000598938 SLC37A4O43826 429 aa20.6■□□□□ 0.89
LIG1-216ENST00000598938 SORBS3O60504 671 aa20.6■□□□□ 0.89
LIG1-216ENST00000598938 CCNT1O60563 726 aaKnown RBP20.6■□□□□ 0.89
LIG1-216ENST00000598938 MMP3P08254 477 aa20.6■□□□□ 0.89
LIG1-216ENST00000598938 HSDL1Q3SXM5 330 aa20.6■□□□□ 0.89
LIG1-216ENST00000598938 TRIM60Q495X7 471 aa20.6■□□□□ 0.89
LIG1-216ENST00000598938 C9orf50Q5SZB4 431 aa20.6■□□□□ 0.89
LIG1-216ENST00000598938 SPRYD3Q8NCJ5 442 aa20.6■□□□□ 0.89
LIG1-216ENST00000598938 SPATA33Q96N06 139 aa20.6■□□□□ 0.89
LIG1-216ENST00000598938 ZNF577Q9BSK1 485 aa20.6■□□□□ 0.89
LIG1-216ENST00000598938 PRDM5Q9NQX1 630 aaPredicted RBP20.6■□□□□ 0.89
LIG1-216ENST00000598938 CDH23Q9H251 3354 aa20.59■□□□□ 0.89
LIG1-216ENST00000598938 IPO5O00410 1097 aaKnown RBP20.59■□□□□ 0.89
LIG1-216ENST00000598938 DHX15O43143 795 aaKnown RBP20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms