RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 GPR20Q99678 358 aa16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 MLXIPQ9HAP2 919 aa16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 ELP1O95163 1332 aa16.18■□□□□ 0.18
SHKBP1-217ENST00000598558 CYP3A7-CYP3A51PA0A087WV96 503 aa16.17■□□□□ 0.18
SHKBP1-217ENST00000598558 GSTTP1A0A1W2PQM5 241 aa16.17■□□□□ 0.18
SHKBP1-217ENST00000598558 KIF28PB7ZC32 967 aa16.17■□□□□ 0.18
SHKBP1-217ENST00000598558 MAFGO15525 162 aa16.17■□□□□ 0.18
SHKBP1-217ENST00000598558 CYP3A7P24462 503 aa16.17■□□□□ 0.18
SHKBP1-217ENST00000598558 GJB2P29033 226 aa16.17■□□□□ 0.18
SHKBP1-217ENST00000598558 SP4Q02446 784 aa16.17■□□□□ 0.18
SHKBP1-217ENST00000598558 TLE2Q04725 743 aa16.17■□□□□ 0.18
SHKBP1-217ENST00000598558 NONOQ15233 471 aaKnown RBP eCLIP16.17■□□□□ 0.18
SHKBP1-217ENST00000598558 PRR16Q569H4 304 aa16.17■□□□□ 0.18
SHKBP1-217ENST00000598558 C1orf53Q5VUE5 145 aa16.17■□□□□ 0.18
SHKBP1-217ENST00000598558 C7orf61Q8IZ16 206 aa16.17■□□□□ 0.18
SHKBP1-217ENST00000598558 VTI1AQ96AJ9 217 aa16.17■□□□□ 0.18
SHKBP1-217ENST00000598558 MBOAT7Q96N66 472 aa16.17■□□□□ 0.18
SHKBP1-217ENST00000598558 C16orf70Q9BSU1 422 aa16.17■□□□□ 0.18
SHKBP1-217ENST00000598558 MTG1Q9BT17 334 aaPredicted RBP16.17■□□□□ 0.18
SHKBP1-217ENST00000598558 POLR3EQ9NVU0 708 aa16.17■□□□□ 0.18
SHKBP1-217ENST00000598558 ATP11BQ9Y2G3 1177 aa16.17■□□□□ 0.18
SHKBP1-217ENST00000598558 ARVCFO00192 962 aa16.16■□□□□ 0.18
SHKBP1-217ENST00000598558 ZEB2O60315 1214 aa16.16■□□□□ 0.18
SHKBP1-217ENST00000598558 EVI5O60447 810 aa16.16■□□□□ 0.18
SHKBP1-217ENST00000598558 PPFIA4O75335 1185 aa16.16■□□□□ 0.18
SHKBP1-217ENST00000598558 CCNE2O96020 404 aa16.16■□□□□ 0.18
SHKBP1-217ENST00000598558 ZNF286BP0CG31 522 aa16.16■□□□□ 0.18
SHKBP1-217ENST00000598558 ITGA7Q13683 1181 aa16.16■□□□□ 0.18
SHKBP1-217ENST00000598558 NBPF20Q3BBV1 942 aa16.16■□□□□ 0.18
SHKBP1-217ENST00000598558 SH3RF1Q7Z6J0 888 aa16.16■□□□□ 0.18
SHKBP1-217ENST00000598558 FAM184AQ8NB25 1140 aa16.16■□□□□ 0.18
SHKBP1-217ENST00000598558 SNX21Q969T3 373 aa16.16■□□□□ 0.18
SHKBP1-217ENST00000598558 CDHR1Q96JP9 859 aa16.16■□□□□ 0.18
SHKBP1-217ENST00000598558 KIAA1217Q5T5P2 1943 aa16.15■□□□□ 0.18
SHKBP1-217ENST00000598558 A0A0U1RQG5 324 aaPredicted RBP16.15■□□□□ 0.18
SHKBP1-217ENST00000598558 CCDC194A0A1B0GVG4 234 aa16.15■□□□□ 0.18
SHKBP1-217ENST00000598558 H0YGN5 161 aa16.15■□□□□ 0.18
SHKBP1-217ENST00000598558 RBAK-RBAKDNI3L0D1 243 aa16.15■□□□□ 0.18
SHKBP1-217ENST00000598558 HAS3O00219 553 aa16.15■□□□□ 0.18
SHKBP1-217ENST00000598558 MSH4O15457 936 aa16.15■□□□□ 0.18
SHKBP1-217ENST00000598558 SLC37A4O43826 429 aa16.15■□□□□ 0.18
SHKBP1-217ENST00000598558 CABYRO75952 493 aa16.15■□□□□ 0.18
SHKBP1-217ENST00000598558 SYN1P17600 705 aa16.15■□□□□ 0.18
SHKBP1-217ENST00000598558 HIC1Q14526 733 aa16.15■□□□□ 0.18
SHKBP1-217ENST00000598558 DGKDQ16760 1214 aa16.15■□□□□ 0.18
SHKBP1-217ENST00000598558 LETM2Q2VYF4 491 aa16.15■□□□□ 0.18
SHKBP1-217ENST00000598558 TRIM50Q86XT4 487 aa16.15■□□□□ 0.18
SHKBP1-217ENST00000598558 PCYT2Q99447 389 aa16.15■□□□□ 0.18
SHKBP1-217ENST00000598558 ZMYND8Q9ULU4 1186 aaPredicted RBP16.15■□□□□ 0.18
SHKBP1-217ENST00000598558 TRIM43BA6NCK2 446 aa16.14■□□□□ 0.17
SHKBP1-217ENST00000598558 K7ELQ4 463 aaPredicted RBP16.14■□□□□ 0.17
SHKBP1-217ENST00000598558 DDX39AO00148 427 aaKnown RBP16.14■□□□□ 0.17
SHKBP1-217ENST00000598558 IPO5O00410 1097 aaKnown RBP16.14■□□□□ 0.17
SHKBP1-217ENST00000598558 KPNA6O60684 536 aa16.14■□□□□ 0.17
SHKBP1-217ENST00000598558 PQBP1O60828 265 aaKnown RBP16.14■□□□□ 0.17
SHKBP1-217ENST00000598558 LGALS2P05162 132 aa16.14■□□□□ 0.17
SHKBP1-217ENST00000598558 FAAP100Q0VG06 881 aa16.14■□□□□ 0.17
SHKBP1-217ENST00000598558 TRIM29Q14134 588 aa16.14■□□□□ 0.17
SHKBP1-217ENST00000598558 Q4G0T1 1027 aa16.14■□□□□ 0.17
SHKBP1-217ENST00000598558 BRDTQ58F21 947 aaPredicted RBP16.14■□□□□ 0.17
SHKBP1-217ENST00000598558 UTP14CQ5TAP6 766 aaKnown RBP16.14■□□□□ 0.17
SHKBP1-217ENST00000598558 ANKRD33Q7Z3H0 272 aa16.14■□□□□ 0.17
SHKBP1-217ENST00000598558 TRIM43Q96BQ3 446 aaPredicted RBP16.14■□□□□ 0.17
SHKBP1-217ENST00000598558 ZNF577Q9BSK1 485 aa16.14■□□□□ 0.17
SHKBP1-217ENST00000598558 TRPV6Q9H1D0 765 aa16.14■□□□□ 0.17
SHKBP1-217ENST00000598558 FOXD4L1Q9NU39 408 aa16.14■□□□□ 0.17
SHKBP1-217ENST00000598558 SMC3Q9UQE7 1217 aa16.14■□□□□ 0.17
SHKBP1-217ENST00000598558 NFASCO94856 1347 aa16.14■□□□□ 0.17
SHKBP1-217ENST00000598558 F2P00734 622 aa16.13■□□□□ 0.17
SHKBP1-217ENST00000598558 CD4P01730 458 aa16.13■□□□□ 0.17
SHKBP1-217ENST00000598558 ITGB8P26012 769 aa16.13■□□□□ 0.17
SHKBP1-217ENST00000598558 PSEN2P49810 448 aa16.13■□□□□ 0.17
SHKBP1-217ENST00000598558 CHMP4BP1P59074 171 aa16.13■□□□□ 0.17
SHKBP1-217ENST00000598558 NEK8Q86SG6 692 aa16.13■□□□□ 0.17
SHKBP1-217ENST00000598558 FAM126BQ8IXS8 530 aa16.13■□□□□ 0.17
SHKBP1-217ENST00000598558 GIMAP8Q8ND71 665 aaPredicted RBP16.13■□□□□ 0.17
SHKBP1-217ENST00000598558 ETNPPLQ8TBG4 499 aa16.13■□□□□ 0.17
SHKBP1-217ENST00000598558 SEPT1Q8WYJ6 367 aa16.13■□□□□ 0.17
SHKBP1-217ENST00000598558 SLC5A5Q92911 643 aa16.13■□□□□ 0.17
SHKBP1-217ENST00000598558 CTAGE1Q96RT6 745 aa16.13■□□□□ 0.17
SHKBP1-217ENST00000598558 JPH1Q9HDC5 661 aaPredicted RBP16.13■□□□□ 0.17
SHKBP1-217ENST00000598558 PDLIM7Q9NR12 457 aa16.13■□□□□ 0.17
SHKBP1-217ENST00000598558 SLC9A2Q9UBY0 812 aa16.13■□□□□ 0.17
SHKBP1-217ENST00000598558 ALPK3Q96L96 1907 aa16.13■□□□□ 0.17
SHKBP1-217ENST00000598558 ATG7O95352 703 aa16.12■□□□□ 0.17
SHKBP1-217ENST00000598558 TCF7P36402 384 aaPredicted RBP16.12■□□□□ 0.17
SHKBP1-217ENST00000598558 ACTR2P61160 394 aa16.12■□□□□ 0.17
SHKBP1-217ENST00000598558 MFSD10Q14728 455 aa16.12■□□□□ 0.17
SHKBP1-217ENST00000598558 MOXD1Q6UVY6 613 aa16.12■□□□□ 0.17
SHKBP1-217ENST00000598558 HAS1Q92839 578 aa16.12■□□□□ 0.17
SHKBP1-217ENST00000598558 TOX2Q96NM4 488 aa16.12■□□□□ 0.17
SHKBP1-217ENST00000598558 BRMS1Q9HCU9 246 aa16.12■□□□□ 0.17
SHKBP1-217ENST00000598558 TRMT13Q9NUP7 481 aaKnown RBP16.12■□□□□ 0.17
SHKBP1-217ENST00000598558 HDAC6Q9UBN7 1215 aa16.12■□□□□ 0.17
SHKBP1-217ENST00000598558 DDX25Q9UHL0 483 aaKnown RBP16.12■□□□□ 0.17
SHKBP1-217ENST00000598558 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.12■□□□□ 0.17
SHKBP1-217ENST00000598558 NOP56O00567 594 aaKnown RBP16.11■□□□□ 0.17
SHKBP1-217ENST00000598558 B4GALT4O60513 344 aa16.11■□□□□ 0.17
SHKBP1-217ENST00000598558 CCNT1O60563 726 aaKnown RBP16.11■□□□□ 0.17
SHKBP1-217ENST00000598558 PSMD10O75832 226 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms