RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, human

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-213	ENST00000597325	FOXP1	Q9H334	677 aa	Predicted RBP	13.75	□□□□□ -0.21
SHKBP1-213	ENST00000597325	RNF146	Q9NTX7	359 aa		13.75	□□□□□ -0.21
SHKBP1-213	ENST00000597325	NRBP1	Q9UHY1	535 aa		13.75	□□□□□ -0.21
SHKBP1-213	ENST00000597325	ZNF214	Q9UL59	606 aa	Predicted RBP	13.75	□□□□□ -0.21
SHKBP1-213	ENST00000597325	DMXL1	Q9Y485	3027 aa		13.75	□□□□□ -0.21
SHKBP1-213	ENST00000597325	CCDC194	A0A1B0GVG4	234 aa		13.74	□□□□□ -0.21
SHKBP1-213	ENST00000597325	BTBD18	B2RXH4	712 aa		13.74	□□□□□ -0.21
SHKBP1-213	ENST00000597325	REST	Q13127	1097 aa		13.74	□□□□□ -0.21
SHKBP1-213	ENST00000597325	MCTP2	Q6DN12	878 aa		13.74	□□□□□ -0.21
SHKBP1-213	ENST00000597325	OTOP2	Q7RTS6	562 aa		13.74	□□□□□ -0.21
SHKBP1-213	ENST00000597325	KRT25	Q7Z3Z0	450 aa		13.74	□□□□□ -0.21
SHKBP1-213	ENST00000597325	NOSTRIN	Q8IVI9	506 aa		13.74	□□□□□ -0.21
SHKBP1-213	ENST00000597325	KLHDC9	Q8NEP7	349 aa		13.74	□□□□□ -0.21
SHKBP1-213	ENST00000597325	TRERF1	Q96PN7	1200 aa		13.74	□□□□□ -0.21
SHKBP1-213	ENST00000597325	PPP1R12C	Q9BZL4	782 aa		13.74	□□□□□ -0.21
SHKBP1-213	ENST00000597325	ACAD9	Q9H845	621 aa		13.74	□□□□□ -0.21
SHKBP1-213	ENST00000597325	FBXO40	Q9UH90	709 aa		13.74	□□□□□ -0.21
SHKBP1-213	ENST00000597325	MOXD2P	A6NHM9	499 aa		13.73	□□□□□ -0.21
SHKBP1-213	ENST00000597325	GCOM1	H8Y6P7	765 aa	Predicted RBP	13.73	□□□□□ -0.21
SHKBP1-213	ENST00000597325	SLC25A27	O95847	323 aa		13.73	□□□□□ -0.21
SHKBP1-213	ENST00000597325	POLR2M	P0CAP2	368 aa		13.73	□□□□□ -0.21
SHKBP1-213	ENST00000597325	CYP2C18	P33260	490 aa		13.73	□□□□□ -0.21
SHKBP1-213	ENST00000597325	HFE2	Q6ZVN8	426 aa		13.73	□□□□□ -0.21
SHKBP1-213	ENST00000597325	NCAPG2	Q86XI2	1143 aa		13.73	□□□□□ -0.21
SHKBP1-213	ENST00000597325	RIOX2	Q8IUF8	465 aa		13.73	□□□□□ -0.21
SHKBP1-213	ENST00000597325	CHST13	Q8NET6	341 aa		13.73	□□□□□ -0.21
SHKBP1-213	ENST00000597325	OXER1	Q8TDS5	423 aa		13.73	□□□□□ -0.21
SHKBP1-213	ENST00000597325	LENG1	Q96BZ8	264 aa	Predicted RBP	13.73	□□□□□ -0.21
SHKBP1-213	ENST00000597325	VWCE	Q96DN2	955 aa		13.73	□□□□□ -0.21
SHKBP1-213	ENST00000597325	NOL7	Q9UMY1	257 aa	Known RBP	13.73	□□□□□ -0.21
SHKBP1-213	ENST00000597325	ZDHHC9	Q9Y397	364 aa		13.73	□□□□□ -0.21
SHKBP1-213	ENST00000597325	ZNFX1	Q9P2E3	1918 aa	Known RBP	13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	ELP1	O95163	1332 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	SPDYE3	A6NKU9	549 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	KIF28P	B7ZC32	967 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	DCX	O43602	365 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	LPXN	O60711	386 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	CFB	P00751	764 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	CA3	P07451	260 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	ZNF865	P0CJ78	1059 aa	Predicted RBP	13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	U2AF2	P26368	475 aa	Known RBP eCLIP	13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	NR5A1	Q13285	461 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	AP3B2	Q13367	1082 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	NPY5R	Q15761	445 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	KCNA10	Q16322	511 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	UBE2S	Q16763	222 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	NSMF	Q6X4W1	530 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	FAM126B	Q8IXS8	530 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	ABRA	Q8N0Z2	381 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	SAMD3	Q8N6K7	520 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	SHCBP1	Q8NEM2	672 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	PRSS33	Q8NF86	280 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	EHMT1	Q9H9B1	1298 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	CERS4	Q9HA82	394 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	SLC5A4	Q9NY91	659 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	CFAP47	Q6ZTR5	3102 aa		13.72	□□□□□ -0.21
SHKBP1-213	ENST00000597325	SYNRG	Q9UMZ2	1314 aa		13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	MYH15	Q9Y2K3	1946 aa		13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	PIK3CD	O00329	1044 aa		13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	NFIB	O00712	420 aa		13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	ARHGEF15	O94989	841 aa		13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	FOS	P01100	380 aa	Predicted RBP	13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	CD4	P01730	458 aa		13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	ERCC3	P19447	782 aa		13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	NONO	Q15233	471 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	MUM1L1	Q5H9M0	696 aa		13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	JAKMIP3	Q5VZ66	844 aa		13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	USP17L6P	Q6QN14	398 aa		13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	PIK3AP1	Q6ZUJ8	805 aa		13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	RASGRP4	Q8TDF6	673 aa		13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	CLEC4D	Q8WXI8	215 aa		13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	ZNF396	Q96N95	335 aa	Predicted RBP	13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	MAF1	Q9H063	256 aa		13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	MROH8	Q9H579	483 aa		13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	MAP3K20	Q9NYL2	800 aa	Known RBP	13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	PCDHA6	Q9UN73	950 aa		13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	RIPK3	Q9Y572	518 aa		13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	PCDHA8	Q9Y5H6	950 aa		13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	SLC4A7	Q9Y6M7	1214 aa		13.71	□□□□□ -0.21
SHKBP1-213	ENST00000597325	KMT2B	Q9UMN6	2715 aa	Predicted RBP	13.7	□□□□□ -0.22
SHKBP1-213	ENST00000597325	CACNA1B	Q00975	2339 aa		13.7	□□□□□ -0.22
SHKBP1-213	ENST00000597325	UMODL1	Q5DID0	1318 aa		13.7	□□□□□ -0.22
SHKBP1-213	ENST00000597325	COL4A4	P53420	1690 aa	Predicted RBP	13.7	□□□□□ -0.22
SHKBP1-213	ENST00000597325	ARVCF	O00192	962 aa		13.7	□□□□□ -0.22
SHKBP1-213	ENST00000597325	OPLAH	O14841	1288 aa		13.7	□□□□□ -0.22
SHKBP1-213	ENST00000597325	AKR1A1	P14550	325 aa		13.7	□□□□□ -0.22
SHKBP1-213	ENST00000597325	ATP2A2	P16615	1042 aa	Known RBP	13.7	□□□□□ -0.22
SHKBP1-213	ENST00000597325	NCL	P19338	710 aa	Known RBP	13.7	□□□□□ -0.22
SHKBP1-213	ENST00000597325	HOXA13	P31271	388 aa	Predicted RBP	13.7	□□□□□ -0.22
SHKBP1-213	ENST00000597325	SSTR3	P32745	418 aa	Predicted RBP	13.7	□□□□□ -0.22
SHKBP1-213	ENST00000597325	HSD17B4	P51659	736 aa		13.7	□□□□□ -0.22
SHKBP1-213	ENST00000597325	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.7	□□□□□ -0.22
SHKBP1-213	ENST00000597325	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.7	□□□□□ -0.22
SHKBP1-213	ENST00000597325	RNF207	Q6ZRF8	634 aa		13.7	□□□□□ -0.22
SHKBP1-213	ENST00000597325	ANKRD35	Q8N283	1001 aa		13.7	□□□□□ -0.22
SHKBP1-213	ENST00000597325	TNPO1	Q92973	898 aa	Known RBP	13.7	□□□□□ -0.22
SHKBP1-213	ENST00000597325	TNFRSF25	Q93038	417 aa		13.7	□□□□□ -0.22
SHKBP1-213	ENST00000597325	TMEM260	Q9NX78	707 aa		13.7	□□□□□ -0.22

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