RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 TBX21Q9UL17 535 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 PCDHA4Q9UN74 947 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 DOCK5Q9H7D0 1870 aa12.74□□□□□ -0.37
VRK3-210ENST00000596121 IGLV3-22A0A075B6J6 115 aa12.73□□□□□ -0.37
VRK3-210ENST00000596121 GSTTP1A0A1W2PQM5 241 aa12.73□□□□□ -0.37
VRK3-210ENST00000596121 HAS3O00219 553 aa12.73□□□□□ -0.37
VRK3-210ENST00000596121 B4GALT4O60513 344 aa12.73□□□□□ -0.37
VRK3-210ENST00000596121 KPNA6O60684 536 aa12.73□□□□□ -0.37
VRK3-210ENST00000596121 PPFIA4O75335 1185 aa12.73□□□□□ -0.37
VRK3-210ENST00000596121 CDKL5O76039 1030 aa12.73□□□□□ -0.37
VRK3-210ENST00000596121 CYP3A4P08684 503 aa12.73□□□□□ -0.37
VRK3-210ENST00000596121 ITGB3BPQ13352 177 aaPredicted RBP12.73□□□□□ -0.37
VRK3-210ENST00000596121 MTMR1Q13613 665 aa12.73□□□□□ -0.37
VRK3-210ENST00000596121 DGKDQ16760 1214 aa12.73□□□□□ -0.37
VRK3-210ENST00000596121 BRDTQ58F21 947 aaPredicted RBP12.73□□□□□ -0.37
VRK3-210ENST00000596121 CCDC83Q8IWF9 413 aa12.73□□□□□ -0.37
VRK3-210ENST00000596121 DAGLBQ8NCG7 672 aa12.73□□□□□ -0.37
VRK3-210ENST00000596121 CCDC148Q8NFR7 591 aa12.73□□□□□ -0.37
VRK3-210ENST00000596121 BADQ92934 168 aa12.73□□□□□ -0.37
VRK3-210ENST00000596121 PHF20Q9BVI0 1012 aa12.73□□□□□ -0.37
VRK3-210ENST00000596121 AGO4Q9HCK5 861 aaKnown RBP12.73□□□□□ -0.37
VRK3-210ENST00000596121 TMEM39AQ9NV64 488 aa12.73□□□□□ -0.37
VRK3-210ENST00000596121 UMODL1Q5DID0 1318 aa12.72□□□□□ -0.37
VRK3-210ENST00000596121 DCDC2CA8MYV0 355 aa12.72□□□□□ -0.37
VRK3-210ENST00000596121 DHX15O43143 795 aaKnown RBP12.72□□□□□ -0.37
VRK3-210ENST00000596121 F2P00734 622 aa12.72□□□□□ -0.37
VRK3-210ENST00000596121 PSEN2P49810 448 aa12.72□□□□□ -0.37
VRK3-210ENST00000596121 EPHB4P54760 987 aa12.72□□□□□ -0.37
VRK3-210ENST00000596121 CHMP4BP1P59074 171 aa12.72□□□□□ -0.37
VRK3-210ENST00000596121 SP4Q02446 784 aa12.72□□□□□ -0.37
VRK3-210ENST00000596121 NEDD9Q14511 834 aa12.72□□□□□ -0.37
VRK3-210ENST00000596121 RABEP1Q15276 862 aa12.72□□□□□ -0.37
VRK3-210ENST00000596121 EARS2Q5JPH6 523 aaKnown RBP12.72□□□□□ -0.37
VRK3-210ENST00000596121 BLIDQ8IZY5 108 aa12.72□□□□□ -0.37
VRK3-210ENST00000596121 LENG9Q96B70 501 aa12.72□□□□□ -0.37
VRK3-210ENST00000596121 ALG1Q9BT22 464 aa12.72□□□□□ -0.37
VRK3-210ENST00000596121 EHMT1Q9H9B1 1298 aa12.72□□□□□ -0.37
VRK3-210ENST00000596121 LAMA3Q16787 3333 aa12.72□□□□□ -0.37
VRK3-210ENST00000596121 FAM205CA6NFA0 338 aa12.71□□□□□ -0.37
VRK3-210ENST00000596121 LGALS2P05162 132 aa12.71□□□□□ -0.37
VRK3-210ENST00000596121 CYP2C9P11712 490 aa12.71□□□□□ -0.37
VRK3-210ENST00000596121 CIITAP33076 1130 aa12.71□□□□□ -0.37
VRK3-210ENST00000596121 BMP8BP34820 402 aa12.71□□□□□ -0.37
VRK3-210ENST00000596121 MFSD10Q14728 455 aa12.71□□□□□ -0.37
VRK3-210ENST00000596121 HABP4Q5JVS0 413 aaKnown RBP12.71□□□□□ -0.37
VRK3-210ENST00000596121 GDF6Q6KF10 455 aaPredicted RBP12.71□□□□□ -0.37
VRK3-210ENST00000596121 NFRKBQ6P4R8 1299 aa12.71□□□□□ -0.37
VRK3-210ENST00000596121 PLA2G4DQ86XP0 818 aa12.71□□□□□ -0.37
VRK3-210ENST00000596121 TRIM50Q86XT4 487 aa12.71□□□□□ -0.37
VRK3-210ENST00000596121 BICD2Q8TD16 824 aa12.71□□□□□ -0.37
VRK3-210ENST00000596121 LTBP2Q14767 1821 aa12.71□□□□□ -0.38
VRK3-210ENST00000596121 MROH7Q68CQ1 1323 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 MAFGO15525 162 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 CCNE2O96020 404 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 TIMP1P01033 207 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 CYP2C18P33260 490 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 ZNF76P36508 570 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 FOSBP53539 338 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 ZNF200P98182 395 aaPredicted RBP12.7□□□□□ -0.38
VRK3-210ENST00000596121 KIAA0753Q2KHM9 967 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 FAM47CQ5HY64 1035 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 UTP14CQ5TAP6 766 aaKnown RBP12.7□□□□□ -0.38
VRK3-210ENST00000596121 MCTP2Q6DN12 878 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 C16orf59Q7L2K0 433 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 NIPA1Q7RTP0 329 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 FAM177A1Q8N128 213 aaPredicted RBP12.7□□□□□ -0.38
VRK3-210ENST00000596121 TBCKQ8TEA7 893 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 TNFRSF25Q93038 417 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 GJA10Q969M2 543 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 VWCEQ96DN2 955 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 CDHR1Q96JP9 859 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 ZSCAN31Q96LW9 406 aaPredicted RBP12.7□□□□□ -0.38
VRK3-210ENST00000596121 PCYT2Q99447 389 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 NOC4LQ9BVI4 516 aaKnown RBP12.7□□□□□ -0.38
VRK3-210ENST00000596121 PPP1R12CQ9BZL4 782 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 HDAC6Q9UBN7 1215 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 PRKAG2Q9UGJ0 569 aa12.7□□□□□ -0.38
VRK3-210ENST00000596121 NOP56O00567 594 aaKnown RBP12.69□□□□□ -0.38
VRK3-210ENST00000596121 TLR3O15455 904 aaKnown RBP12.69□□□□□ -0.38
VRK3-210ENST00000596121 TDP2O95551 362 aa12.69□□□□□ -0.38
VRK3-210ENST00000596121 RAG1P15918 1043 aa12.69□□□□□ -0.38
VRK3-210ENST00000596121 TCF7P36402 384 aaPredicted RBP12.69□□□□□ -0.38
VRK3-210ENST00000596121 NR5A1Q13285 461 aa12.69□□□□□ -0.38
VRK3-210ENST00000596121 INF2Q27J81 1249 aa12.69□□□□□ -0.38
VRK3-210ENST00000596121 PRR16Q569H4 304 aa12.69□□□□□ -0.38
VRK3-210ENST00000596121 GALNT17Q6IS24 598 aa12.69□□□□□ -0.38
VRK3-210ENST00000596121 SESTD1Q86VW0 696 aa12.69□□□□□ -0.38
VRK3-210ENST00000596121 GIMAP8Q8ND71 665 aaPredicted RBP12.69□□□□□ -0.38
VRK3-210ENST00000596121 DHX38Q92620 1227 aaKnown RBP12.69□□□□□ -0.38
VRK3-210ENST00000596121 WNT8BQ93098 351 aa12.69□□□□□ -0.38
VRK3-210ENST00000596121 SEZ6LQ9BYH1 1024 aa12.69□□□□□ -0.38
VRK3-210ENST00000596121 UBE2OQ9C0C9 1292 aaKnown RBP12.69□□□□□ -0.38
VRK3-210ENST00000596121 WNT8AQ9H1J5 351 aa12.69□□□□□ -0.38
VRK3-210ENST00000596121 RNPEPQ9H4A4 650 aa12.69□□□□□ -0.38
VRK3-210ENST00000596121 UPF2Q9HAU5 1272 aaKnown RBP12.69□□□□□ -0.38
VRK3-210ENST00000596121 GTF2IRD1Q9UHL9 959 aa12.69□□□□□ -0.38
VRK3-210ENST00000596121 NFASCO94856 1347 aa12.68□□□□□ -0.38
VRK3-210ENST00000596121 CYP3A7-CYP3A51PA0A087WV96 503 aa12.68□□□□□ -0.38
VRK3-210ENST00000596121 H3BRB1 525 aa12.68□□□□□ -0.38
VRK3-210ENST00000596121 DDX39AO00148 427 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms