RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 SENP2Q9HC62 589 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 MKRN1Q9UHC7 482 aaKnown RBP10.83□□□□□ -0.68
LIG3-216ENST00000593099 YDJCA8MPS7 323 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 KBTBD13C9JR72 458 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 SRGAP2CP0DJJ0 459 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 ERCC3P19447 782 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 PTPREP23469 700 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 PAFAH1B1P43034 410 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 CDR1P51861 262 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 PSMC5P62195 406 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 HERVK_113P62684 666 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 PPIL2Q13356 520 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 VGLL4Q14135 290 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 CATSPER4Q7RTX7 472 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 TMEM206Q9H813 350 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 JPH1Q9HDC5 661 aaPredicted RBP10.83□□□□□ -0.68
LIG3-216ENST00000593099 PARP2Q9UGN5 583 aa10.83□□□□□ -0.68
LIG3-216ENST00000593099 N4BP1O75113 896 aaKnown RBP10.82□□□□□ -0.68
LIG3-216ENST00000593099 RPS6P62753 249 aaKnown RBP10.82□□□□□ -0.68
LIG3-216ENST00000593099 CNGA4Q8IV77 575 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 BANK1Q8NDB2 785 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 ATP6V0A4Q9HBG4 840 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 NUB1Q9Y5A7 615 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 POTEMA6NI47 508 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 K7ERI5 159 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 RGMBQ6NW40 437 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 NBPF11Q86T75 865 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 TRMT44Q8IYL2 757 aaKnown RBP10.82□□□□□ -0.68
LIG3-216ENST00000593099 CCDC127Q96BQ5 260 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 TAB2Q9NYJ8 693 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 PCDHA5Q9Y5H7 936 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 CNTNAP5Q8WYK1 1306 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 LRRC37A3O60309 1634 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 NHSL1Q5SYE7 1610 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 KLRG2A4D1S0 409 aaPredicted RBP10.82□□□□□ -0.68
LIG3-216ENST00000593099 RARBP10826 455 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 BCRP11274 1271 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 CACNB1Q02641 598 aaPredicted RBP10.82□□□□□ -0.68
LIG3-216ENST00000593099 NOGQ13253 232 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 ADAM9Q13443 819 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 ALCAMQ13740 583 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 EPHA7Q15375 998 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 POTEDQ86YR6 584 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 CTNNBL1Q8WYA6 563 aaPredicted RBP10.82□□□□□ -0.68
LIG3-216ENST00000593099 ESYT2A0FGR8 921 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 MAFGO15525 162 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 PTPRAP18433 802 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 KRT83P78385 493 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 TRIM14Q14142 442 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 PIGOQ8TEQ8 1089 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 PSPC1Q8WXF1 523 aaKnown RBP10.82□□□□□ -0.68
LIG3-216ENST00000593099 DYDC2Q96IM9 177 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 MAD2L2Q9UI95 211 aa10.82□□□□□ -0.68
LIG3-216ENST00000593099 STXBP3O00186 592 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 HOXA7P31268 230 aaPredicted RBP10.81□□□□□ -0.68
LIG3-216ENST00000593099 DSG3P32926 999 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 SEPT1Q8WYJ6 367 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 EPSTI1Q96J88 318 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 NUP58Q9BVL2 599 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 PHLPP2Q6ZVD8 1323 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 TLR3O15455 904 aaKnown RBP10.81□□□□□ -0.68
LIG3-216ENST00000593099 TBC1D12O60347 775 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 DLATP10515 647 aaKnown RBP10.81□□□□□ -0.68
LIG3-216ENST00000593099 TNFAIP3P21580 790 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 STAT5BP51692 787 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 SESTD1Q86VW0 696 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 SAMD3Q8N6K7 520 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 GOLGA1Q92805 767 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 PPP1R16BQ96T49 567 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 TRMT1Q9NXH9 659 aaKnown RBP10.81□□□□□ -0.68
LIG3-216ENST00000593099 PCDHAC2Q9Y5I4 1007 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 PRPHP41219 470 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 FANCCQ00597 558 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 RNASELQ05823 741 aaKnown RBP10.81□□□□□ -0.68
LIG3-216ENST00000593099 PRPF4BQ13523 1007 aaKnown RBP10.81□□□□□ -0.68
LIG3-216ENST00000593099 PADI6Q6TGC4 694 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 CCDC186Q7Z3E2 898 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 PROCA1Q8NCQ7 364 aaPredicted RBP10.81□□□□□ -0.68
LIG3-216ENST00000593099 MAP3K20Q9NYL2 800 aaKnown RBP10.81□□□□□ -0.68
LIG3-216ENST00000593099 PHKA2P46019 1235 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 IGSF22Q8N9C0 903 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 PHF20Q9BVI0 1012 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 KATNAL1Q9BW62 490 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 SPATC1LQ9H0A9 340 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 FAM184BQ9ULE4 1060 aa10.81□□□□□ -0.68
LIG3-216ENST00000593099 CYFIP1Q7L576 1253 aa10.8□□□□□ -0.68
LIG3-216ENST00000593099 CCDC117Q8IWD4 279 aaPredicted RBP10.8□□□□□ -0.68
LIG3-216ENST00000593099 RGS22Q8NE09 1264 aa10.8□□□□□ -0.68
LIG3-216ENST00000593099 ZMYND12Q9H0C1 365 aa10.8□□□□□ -0.68
LIG3-216ENST00000593099 TRPM3Q9HCF6 1732 aaPredicted RBP10.8□□□□□ -0.68
LIG3-216ENST00000593099 HMGB1P1B2RPK0 211 aaPredicted RBP10.8□□□□□ -0.68
LIG3-216ENST00000593099 SEC23AQ15436 765 aa10.8□□□□□ -0.68
LIG3-216ENST00000593099 ZNF579Q8NAF0 562 aaKnown RBP10.8□□□□□ -0.68
LIG3-216ENST00000593099 LMBR1Q8WVP7 490 aa10.8□□□□□ -0.68
LIG3-216ENST00000593099 CCDC94Q9BW85 323 aaPredicted RBP10.8□□□□□ -0.68
LIG3-216ENST00000593099 SYNPO2Q9UMS6 1093 aa10.8□□□□□ -0.68
LIG3-216ENST00000593099 AK9Q5TCS8 1911 aa10.8□□□□□ -0.68
LIG3-216ENST00000593099 VGLL3A8MV65 326 aa10.8□□□□□ -0.68
LIG3-216ENST00000593099 EIF3JO75822 258 aaKnown RBP10.8□□□□□ -0.68
LIG3-216ENST00000593099 STAM2O75886 525 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms