RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 FRMPD2Q68DX3 1309 aaPredicted RBP12.9□□□□□ -0.34
ZNF540-209ENST00000590588 C17orf102A2RUQ5 167 aa12.9□□□□□ -0.34
ZNF540-209ENST00000590588 M0R2C6 588 aa12.9□□□□□ -0.34
ZNF540-209ENST00000590588 EIF3JO75822 258 aaKnown RBP12.9□□□□□ -0.34
ZNF540-209ENST00000590588 CSPG5O95196 566 aa12.9□□□□□ -0.34
ZNF540-209ENST00000590588 ATF7P17544 494 aaPredicted RBP12.9□□□□□ -0.34
ZNF540-209ENST00000590588 CAMK1Q14012 370 aa12.9□□□□□ -0.34
ZNF540-209ENST00000590588 PTPN21Q16825 1174 aa12.9□□□□□ -0.34
ZNF540-209ENST00000590588 NAALADL2Q58DX5 795 aa12.9□□□□□ -0.34
ZNF540-209ENST00000590588 P2RX5Q93086 422 aa12.9□□□□□ -0.34
ZNF540-209ENST00000590588 NKD2Q969F2 451 aaPredicted RBP12.9□□□□□ -0.34
ZNF540-209ENST00000590588 TAAR1Q96RJ0 339 aa12.9□□□□□ -0.34
ZNF540-209ENST00000590588 MRVI1Q9Y6F6 885 aa12.9□□□□□ -0.34
ZNF540-209ENST00000590588 RALGAPA2Q2PPJ7 1873 aa12.9□□□□□ -0.34
ZNF540-209ENST00000590588 NLRC5Q86WI3 1866 aa12.9□□□□□ -0.34
ZNF540-209ENST00000590588 ADGRA3Q8IWK6 1321 aa12.89□□□□□ -0.35
ZNF540-209ENST00000590588 PLXNA3P51805 1871 aa12.89□□□□□ -0.35
ZNF540-209ENST00000590588 RANBP6O60518 1105 aaKnown RBP12.89□□□□□ -0.35
ZNF540-209ENST00000590588 HOXD8P13378 290 aaPredicted RBP12.89□□□□□ -0.35
ZNF540-209ENST00000590588 BTG3Q14201 252 aaPredicted RBP12.89□□□□□ -0.35
ZNF540-209ENST00000590588 ADSSL1Q8N142 457 aa12.89□□□□□ -0.35
ZNF540-209ENST00000590588 RMDN3Q96TC7 470 aa12.89□□□□□ -0.35
ZNF540-209ENST00000590588 OSBPL7Q9BZF2 842 aa12.89□□□□□ -0.35
ZNF540-209ENST00000590588 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.89□□□□□ -0.35
ZNF540-209ENST00000590588 RIF1Q5UIP0 2472 aaKnown RBP12.89□□□□□ -0.35
ZNF540-209ENST00000590588 TREHO43280 583 aa12.88□□□□□ -0.35
ZNF540-209ENST00000590588 PDGFBP01127 241 aaPredicted RBP12.88□□□□□ -0.35
ZNF540-209ENST00000590588 NEFLP07196 543 aa12.88□□□□□ -0.35
ZNF540-209ENST00000590588 CTSHP09668 335 aa12.88□□□□□ -0.35
ZNF540-209ENST00000590588 TOP1P11387 765 aaKnown RBP12.88□□□□□ -0.35
ZNF540-209ENST00000590588 HNRNPUQ00839 825 aaKnown RBP eCLIP12.88□□□□□ -0.35
ZNF540-209ENST00000590588 USH1GQ495M9 461 aa12.88□□□□□ -0.35
ZNF540-209ENST00000590588 ARHGEF16Q5VV41 709 aa12.88□□□□□ -0.35
ZNF540-209ENST00000590588 MYSM1Q5VVJ2 828 aa12.88□□□□□ -0.35
ZNF540-209ENST00000590588 MCTP2Q6DN12 878 aa12.88□□□□□ -0.35
ZNF540-209ENST00000590588 KCNV1Q6PIU1 500 aa12.88□□□□□ -0.35
ZNF540-209ENST00000590588 ADGRD2Q7Z7M1 963 aa12.88□□□□□ -0.35
ZNF540-209ENST00000590588 ZBTB33Q86T24 672 aa12.88□□□□□ -0.35
ZNF540-209ENST00000590588 SIRT2Q8IXJ6 389 aa12.88□□□□□ -0.35
ZNF540-209ENST00000590588 SPPL3Q8TCT6 385 aa12.88□□□□□ -0.35
ZNF540-209ENST00000590588 SYTL5Q8TDW5 730 aaPredicted RBP12.88□□□□□ -0.35
ZNF540-209ENST00000590588 TBC1D5Q92609 795 aa12.88□□□□□ -0.35
ZNF540-209ENST00000590588 ZNF689Q96CS4 500 aaPredicted RBP12.88□□□□□ -0.35
ZNF540-209ENST00000590588 ECHDC1Q9NTX5 307 aa12.88□□□□□ -0.35
ZNF540-209ENST00000590588 FAM186AA6NE01 2351 aa12.87□□□□□ -0.35
ZNF540-209ENST00000590588 H3BRB1 525 aa12.87□□□□□ -0.35
ZNF540-209ENST00000590588 PDHBP11177 359 aa12.87□□□□□ -0.35
ZNF540-209ENST00000590588 GNAT1P11488 350 aa12.87□□□□□ -0.35
ZNF540-209ENST00000590588 HOXC8P31273 242 aa12.87□□□□□ -0.35
ZNF540-209ENST00000590588 NRIP1P48552 1158 aa12.87□□□□□ -0.35
ZNF540-209ENST00000590588 HSDL1Q3SXM5 330 aa12.87□□□□□ -0.35
ZNF540-209ENST00000590588 RBM23Q86U06 439 aaKnown RBP12.87□□□□□ -0.35
ZNF540-209ENST00000590588 MCF2L2Q86YR7 1114 aa12.87□□□□□ -0.35
ZNF540-209ENST00000590588 SUSD6Q92537 303 aa12.87□□□□□ -0.35
ZNF540-209ENST00000590588 SPATA33Q96N06 139 aa12.87□□□□□ -0.35
ZNF540-209ENST00000590588 TMEM47Q9BQJ4 181 aa12.87□□□□□ -0.35
ZNF540-209ENST00000590588 C16orf70Q9BSU1 422 aa12.87□□□□□ -0.35
ZNF540-209ENST00000590588 LRRCC1Q9C099 1032 aa12.87□□□□□ -0.35
ZNF540-209ENST00000590588 RNPEPQ9H4A4 650 aa12.87□□□□□ -0.35
ZNF540-209ENST00000590588 TUT1Q9H6E5 874 aaKnown RBP12.87□□□□□ -0.35
ZNF540-209ENST00000590588 RC3H2Q9HBD1 1191 aaKnown RBP12.87□□□□□ -0.35
ZNF540-209ENST00000590588 BARX2Q9UMQ3 279 aaPredicted RBP12.87□□□□□ -0.35
ZNF540-209ENST00000590588 VPS13AQ96RL7 3174 aa12.87□□□□□ -0.35
ZNF540-209ENST00000590588 ENPP3O14638 875 aa12.86□□□□□ -0.35
ZNF540-209ENST00000590588 GLP2RO95838 553 aa12.86□□□□□ -0.35
ZNF540-209ENST00000590588 ITGB1P05556 798 aa12.86□□□□□ -0.35
ZNF540-209ENST00000590588 NR3C2P08235 984 aa12.86□□□□□ -0.35
ZNF540-209ENST00000590588 DNAJB1P25685 340 aa12.86□□□□□ -0.35
ZNF540-209ENST00000590588 CTDSPL2Q05D32 466 aa12.86□□□□□ -0.35
ZNF540-209ENST00000590588 ZNF543Q08ER8 600 aa12.86□□□□□ -0.35
ZNF540-209ENST00000590588 FAM26DQ5JW98 314 aa12.86□□□□□ -0.35
ZNF540-209ENST00000590588 CELF3Q5SZQ8 465 aaKnown RBP12.86□□□□□ -0.35
ZNF540-209ENST00000590588 FRMD5Q7Z6J6 570 aa12.86□□□□□ -0.35
ZNF540-209ENST00000590588 POF1BQ8WVV4 589 aa12.86□□□□□ -0.35
ZNF540-209ENST00000590588 SEC62Q99442 399 aaKnown RBP12.86□□□□□ -0.35
ZNF540-209ENST00000590588 TCP11L1Q9NUJ3 509 aa12.86□□□□□ -0.35
ZNF540-209ENST00000590588 COL20A1Q9P218 1284 aa12.86□□□□□ -0.35
ZNF540-209ENST00000590588 ABCB11O95342 1321 aa12.86□□□□□ -0.35
ZNF540-209ENST00000590588 FSD2A1L4K1 749 aa12.85□□□□□ -0.35
ZNF540-209ENST00000590588 DGKIO75912 1065 aa12.85□□□□□ -0.35
ZNF540-209ENST00000590588 SMIM10L2AP0DMW4 78 aa12.85□□□□□ -0.35
ZNF540-209ENST00000590588 SMIM10L2BP0DMW5 78 aa12.85□□□□□ -0.35
ZNF540-209ENST00000590588 EIF2AK2P19525 551 aaKnown RBP12.85□□□□□ -0.35
ZNF540-209ENST00000590588 UBALD2Q8IYN6 164 aa12.85□□□□□ -0.35
ZNF540-209ENST00000590588 TMEM105Q8N8V8 129 aa12.85□□□□□ -0.35
ZNF540-209ENST00000590588 KLHL23Q8NBE8 558 aa12.85□□□□□ -0.35
ZNF540-209ENST00000590588 PANK1Q8TE04 598 aa12.85□□□□□ -0.35
ZNF540-209ENST00000590588 TLE6Q9H808 572 aa12.85□□□□□ -0.35
ZNF540-209ENST00000590588 MLXIPQ9HAP2 919 aa12.85□□□□□ -0.35
ZNF540-209ENST00000590588 SUPT16HQ9Y5B9 1047 aaKnown RBP12.85□□□□□ -0.35
ZNF540-209ENST00000590588 DNAH14Q0VDD8 3507 aa12.85□□□□□ -0.35
ZNF540-209ENST00000590588 ATG2AQ2TAZ0 1938 aa12.84□□□□□ -0.35
ZNF540-209ENST00000590588 ORC4O43929 436 aa12.84□□□□□ -0.35
ZNF540-209ENST00000590588 GGPS1O95749 300 aa12.84□□□□□ -0.35
ZNF540-209ENST00000590588 TGFB3P10600 412 aa12.84□□□□□ -0.35
ZNF540-209ENST00000590588 HSPD1P10809 573 aaKnown RBP12.84□□□□□ -0.35
ZNF540-209ENST00000590588 DGLUCYQ7Z3D6 616 aa12.84□□□□□ -0.35
ZNF540-209ENST00000590588 MICAL1Q8TDZ2 1067 aa12.84□□□□□ -0.35
ZNF540-209ENST00000590588 GPATCH3Q96I76 525 aa12.84□□□□□ -0.35
ZNF540-209ENST00000590588 TTC14Q96N46 770 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms