RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 MB21D2Q8IYB1 491 aaPredicted RBP13.6□□□□□ -0.23
CLIP3-204ENST00000590559 SP7Q8TDD2 431 aaPredicted RBP13.6□□□□□ -0.23
CLIP3-204ENST00000590559 ZFP91Q96JP5 570 aaPredicted RBP13.6□□□□□ -0.23
CLIP3-204ENST00000590559 MAP3K14Q99558 947 aa13.6□□□□□ -0.23
CLIP3-204ENST00000590559 OSBPL7Q9BZF2 842 aa13.6□□□□□ -0.23
CLIP3-204ENST00000590559 TUT1Q9H6E5 874 aaKnown RBP13.6□□□□□ -0.23
CLIP3-204ENST00000590559 EMSYQ7Z589 1322 aa13.6□□□□□ -0.23
CLIP3-204ENST00000590559 SORBS3O60504 671 aa13.59□□□□□ -0.23
CLIP3-204ENST00000590559 LGALS2P05162 132 aa13.59□□□□□ -0.23
CLIP3-204ENST00000590559 WTAPQ15007 396 aa13.59□□□□□ -0.23
CLIP3-204ENST00000590559 DBF4BQ8NFT6 615 aa13.59□□□□□ -0.23
CLIP3-204ENST00000590559 NCOA7Q8NI08 942 aa13.59□□□□□ -0.23
CLIP3-204ENST00000590559 GDPD5Q8WTR4 605 aa13.59□□□□□ -0.23
CLIP3-204ENST00000590559 MAP4K1Q92918 833 aa13.59□□□□□ -0.23
CLIP3-204ENST00000590559 HLA-CQ95604 372 aa13.59□□□□□ -0.23
CLIP3-204ENST00000590559 TGS1Q96RS0 853 aaKnown RBP13.59□□□□□ -0.23
CLIP3-204ENST00000590559 RNPEPQ9H4A4 650 aa13.59□□□□□ -0.23
CLIP3-204ENST00000590559 WDFY4Q6ZS81 3184 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.58□□□□□ -0.24
CLIP3-204ENST00000590559 C17orf102A2RUQ5 167 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 RSPH10B2B2RC85 870 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 PIK3CDO00329 1044 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 MEIS2O14770 477 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 TREHO43280 583 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 RSPH10BP0C881 870 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 SMIM10L2AP0DMW4 78 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 SMIM10L2BP0DMW5 78 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 SMARCA1P28370 1054 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 SKIV2LQ15477 1246 aaKnown RBP13.58□□□□□ -0.24
CLIP3-204ENST00000590559 METTL7BQ6UX53 244 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 FCHSD1Q86WN1 690 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 IL27Q8NEV9 243 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 RUFY2Q8WXA3 655 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 ATP6V0A1Q93050 837 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 GPR20Q99678 358 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 ZBED2Q9BTP6 218 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 SPZ1Q9BXG8 430 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 USP26Q9BXU7 913 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 MLXIPQ9HAP2 919 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 LY9Q9HBG7 655 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 RAPGEFL1Q9UHV5 662 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 TELO2Q9Y4R8 837 aa13.58□□□□□ -0.24
CLIP3-204ENST00000590559 ERICH2A1L162 156 aa13.57□□□□□ -0.24
CLIP3-204ENST00000590559 CAND2O75155 1236 aa13.57□□□□□ -0.24
CLIP3-204ENST00000590559 THPOP40225 353 aa13.57□□□□□ -0.24
CLIP3-204ENST00000590559 COL9A3Q14050 684 aaPredicted RBP13.57□□□□□ -0.24
CLIP3-204ENST00000590559 NEDD9Q14511 834 aa13.57□□□□□ -0.24
CLIP3-204ENST00000590559 GNPTABQ3T906 1256 aa13.57□□□□□ -0.24
CLIP3-204ENST00000590559 FAM26DQ5JW98 314 aa13.57□□□□□ -0.24
CLIP3-204ENST00000590559 CYFIP1Q7L576 1253 aa13.57□□□□□ -0.24
CLIP3-204ENST00000590559 SENP7Q9BQF6 1050 aa13.57□□□□□ -0.24
CLIP3-204ENST00000590559 MTA3Q9BTC8 594 aa13.57□□□□□ -0.24
CLIP3-204ENST00000590559 INSL6Q9Y581 213 aa13.57□□□□□ -0.24
CLIP3-204ENST00000590559 LOXHD1Q8IVV2 1947 aa13.56□□□□□ -0.24
CLIP3-204ENST00000590559 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.56□□□□□ -0.24
CLIP3-204ENST00000590559 FIBPO43427 364 aa13.56□□□□□ -0.24
CLIP3-204ENST00000590559 SART3Q15020 963 aaKnown RBP13.56□□□□□ -0.24
CLIP3-204ENST00000590559 PCNX4Q63HM2 1172 aa13.56□□□□□ -0.24
CLIP3-204ENST00000590559 XRRA1Q6P2D8 792 aa13.56□□□□□ -0.24
CLIP3-204ENST00000590559 USP17L6PQ6QN14 398 aa13.56□□□□□ -0.24
CLIP3-204ENST00000590559 RALYLQ86SE5 291 aaKnown RBP13.56□□□□□ -0.24
CLIP3-204ENST00000590559 ZNF654Q8IZM8 581 aa13.56□□□□□ -0.24
CLIP3-204ENST00000590559 TOP1MTQ969P6 601 aa13.56□□□□□ -0.24
CLIP3-204ENST00000590559 C17orf80Q9BSJ5 609 aa13.56□□□□□ -0.24
CLIP3-204ENST00000590559 DDAH1O94760 285 aa13.55□□□□□ -0.24
CLIP3-204ENST00000590559 CATIPQ7Z7H3 387 aa13.55□□□□□ -0.24
CLIP3-204ENST00000590559 RPAINQ86UA6 219 aa13.55□□□□□ -0.24
CLIP3-204ENST00000590559 YTHDC1Q96MU7 727 aaKnown RBP13.55□□□□□ -0.24
CLIP3-204ENST00000590559 C1QTNF1Q9BXJ1 281 aa13.55□□□□□ -0.24
CLIP3-204ENST00000590559 SETD4Q9NVD3 440 aa13.55□□□□□ -0.24
CLIP3-204ENST00000590559 RTEL1Q9NZ71 1219 aa13.55□□□□□ -0.24
CLIP3-204ENST00000590559 MTUS1Q9ULD2 1270 aa13.55□□□□□ -0.24
CLIP3-204ENST00000590559 TTC3P53804 2025 aa13.54□□□□□ -0.24
CLIP3-204ENST00000590559 NOP56O00567 594 aaKnown RBP13.54□□□□□ -0.24
CLIP3-204ENST00000590559 AMHP03971 560 aa13.54□□□□□ -0.24
CLIP3-204ENST00000590559 LINC00271P0C7V0 271 aa13.54□□□□□ -0.24
CLIP3-204ENST00000590559 COL19A1Q14993 1142 aa13.54□□□□□ -0.24
CLIP3-204ENST00000590559 FAM117BQ6P1L5 589 aa13.54□□□□□ -0.24
CLIP3-204ENST00000590559 TRIM50Q86XT4 487 aa13.54□□□□□ -0.24
CLIP3-204ENST00000590559 MYOCDQ8IZQ8 938 aa13.54□□□□□ -0.24
CLIP3-204ENST00000590559 SRBD1Q8N5C6 995 aaKnown RBP13.54□□□□□ -0.24
CLIP3-204ENST00000590559 LMBR1Q8WVP7 490 aa13.54□□□□□ -0.24
CLIP3-204ENST00000590559 KHSRPQ92945 711 aaKnown RBP eCLIP13.54□□□□□ -0.24
CLIP3-204ENST00000590559 MYL10Q9BUA6 226 aa13.54□□□□□ -0.24
CLIP3-204ENST00000590559 EPHX3Q9H6B9 360 aa13.54□□□□□ -0.24
CLIP3-204ENST00000590559 UBE2ZQ9H832 354 aaPredicted RBP13.54□□□□□ -0.24
CLIP3-204ENST00000590559 EHMT1Q9H9B1 1298 aa13.54□□□□□ -0.24
CLIP3-204ENST00000590559 CD320Q9NPF0 282 aa13.54□□□□□ -0.24
CLIP3-204ENST00000590559 RBM8AQ9Y5S9 174 aaKnown RBP13.54□□□□□ -0.24
CLIP3-204ENST00000590559 KIAA1671Q9BY89 1806 aa13.53□□□□□ -0.24
CLIP3-204ENST00000590559 H3BNC9 293 aa13.53□□□□□ -0.24
CLIP3-204ENST00000590559 SH2B2O14492 632 aaPredicted RBP13.53□□□□□ -0.24
CLIP3-204ENST00000590559 ATP9AO75110 1047 aa13.53□□□□□ -0.24
CLIP3-204ENST00000590559 PLEKHA8P1O95397 391 aa13.53□□□□□ -0.24
CLIP3-204ENST00000590559 CHRNA1P02708 482 aa13.53□□□□□ -0.24
CLIP3-204ENST00000590559 GNAT1P11488 350 aa13.53□□□□□ -0.24
CLIP3-204ENST00000590559 KCNA2P16389 499 aa13.53□□□□□ -0.24
CLIP3-204ENST00000590559 LIFRP42702 1097 aa13.53□□□□□ -0.24
CLIP3-204ENST00000590559 MGAT3Q09327 533 aa13.53□□□□□ -0.24
CLIP3-204ENST00000590559 LEXMQ3ZCV2 418 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms