RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 SENP7Q9BQF6 1050 aa9.71□□□□□ -0.86
NUP88-211ENST00000575976 ZNF577Q9BSK1 485 aa9.71□□□□□ -0.86
NUP88-211ENST00000575976 TMEM60Q9H2L4 133 aa9.71□□□□□ -0.86
NUP88-211ENST00000575976 ZSCAN16Q9H4T2 348 aaPredicted RBP9.71□□□□□ -0.86
NUP88-211ENST00000575976 Q9Y3F1 56 aa9.71□□□□□ -0.86
NUP88-211ENST00000575976 PCDHB6Q9Y5E3 794 aa9.71□□□□□ -0.86
NUP88-211ENST00000575976 MYADML2A6NDP7 307 aa9.7□□□□□ -0.86
NUP88-211ENST00000575976 DDX39AO00148 427 aaKnown RBP9.7□□□□□ -0.86
NUP88-211ENST00000575976 IPO5O00410 1097 aaKnown RBP9.7□□□□□ -0.86
NUP88-211ENST00000575976 ADAMTS4O75173 837 aa9.7□□□□□ -0.86
NUP88-211ENST00000575976 FARP2O94887 1054 aaPredicted RBP9.7□□□□□ -0.86
NUP88-211ENST00000575976 SGPL1O95470 568 aa9.7□□□□□ -0.86
NUP88-211ENST00000575976 GJA9P57773 515 aa9.7□□□□□ -0.86
NUP88-211ENST00000575976 ARHGAP1Q07960 439 aa9.7□□□□□ -0.86
NUP88-211ENST00000575976 ITGB3BPQ13352 177 aaPredicted RBP9.7□□□□□ -0.86
NUP88-211ENST00000575976 LAMC2Q13753 1193 aa9.7□□□□□ -0.86
NUP88-211ENST00000575976 NEDD9Q14511 834 aa9.7□□□□□ -0.86
NUP88-211ENST00000575976 CYFIP1Q7L576 1253 aa9.7□□□□□ -0.86
NUP88-211ENST00000575976 TLK2Q86UE8 772 aa9.7□□□□□ -0.86
NUP88-211ENST00000575976 ETNPPLQ8TBG4 499 aa9.7□□□□□ -0.86
NUP88-211ENST00000575976 U2AF1L4Q8WU68 220 aaKnown RBP9.7□□□□□ -0.86
NUP88-211ENST00000575976 IPO9Q96P70 1041 aaKnown RBP9.7□□□□□ -0.86
NUP88-211ENST00000575976 AP5M1Q9H0R1 490 aa9.7□□□□□ -0.86
NUP88-211ENST00000575976 MLXIPQ9HAP2 919 aa9.7□□□□□ -0.86
NUP88-211ENST00000575976 KCNMB3Q9NPA1 279 aa9.7□□□□□ -0.86
NUP88-211ENST00000575976 XPNPEP3Q9NQH7 507 aa9.7□□□□□ -0.86
NUP88-211ENST00000575976 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.7□□□□□ -0.86
NUP88-211ENST00000575976 OGDHLQ9ULD0 1010 aa9.7□□□□□ -0.86
NUP88-211ENST00000575976 TELO2Q9Y4R8 837 aa9.7□□□□□ -0.86
NUP88-211ENST00000575976 SYNRGQ9UMZ2 1314 aa9.7□□□□□ -0.86
NUP88-211ENST00000575976 CTAGE5O15320 804 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 DHX15O43143 795 aaKnown RBP9.69□□□□□ -0.86
NUP88-211ENST00000575976 MARCH6O60337 910 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 NEMFO60524 1076 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 PSMD10O75832 226 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 NFASCO94856 1347 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 TFRCP02786 760 aaKnown RBP9.69□□□□□ -0.86
NUP88-211ENST00000575976 MYCNP04198 464 aaPredicted RBP9.69□□□□□ -0.86
NUP88-211ENST00000575976 C6orf222P0C671 652 aaPredicted RBP9.69□□□□□ -0.86
NUP88-211ENST00000575976 EN2P19622 333 aaPredicted RBP9.69□□□□□ -0.86
NUP88-211ENST00000575976 GJA8P48165 433 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 NKX3-2P78367 333 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 NUCB2P80303 420 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 BEX3Q00994 111 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 SP4Q02446 784 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 ORC2Q13416 577 aaPredicted RBP9.69□□□□□ -0.86
NUP88-211ENST00000575976 CALCRLQ16602 461 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 HSDL1Q3SXM5 330 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 FOXD4L6Q3SYB3 417 aaPredicted RBP9.69□□□□□ -0.86
NUP88-211ENST00000575976 KIAA1217Q5T5P2 1943 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 METTL7BQ6UX53 244 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 FOXD4L3Q6VB84 417 aaPredicted RBP9.69□□□□□ -0.86
NUP88-211ENST00000575976 C4orf32Q8N8J7 132 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 GIMAP8Q8ND71 665 aaPredicted RBP9.69□□□□□ -0.86
NUP88-211ENST00000575976 KLHDC9Q8NEP7 349 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 AFG1LQ8WV93 481 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 HAS1Q92839 578 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 SLC5A5Q92911 643 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 SPATA33Q96N06 139 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 MTMR9Q96QG7 549 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 SDF4Q9BRK5 362 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 FTOQ9C0B1 505 aaKnown RBP eCLIP9.69□□□□□ -0.86
NUP88-211ENST00000575976 CRISPLD2Q9H0B8 497 aa9.69□□□□□ -0.86
NUP88-211ENST00000575976 UPF3AQ9H1J1 476 aaKnown RBP9.69□□□□□ -0.86
NUP88-211ENST00000575976 GSTTP1A0A1W2PQM5 241 aa9.68□□□□□ -0.86
NUP88-211ENST00000575976 A6NJR5 290 aa9.68□□□□□ -0.86
NUP88-211ENST00000575976 TBX3O15119 743 aa9.68□□□□□ -0.86
NUP88-211ENST00000575976 GAS7O60861 476 aa9.68□□□□□ -0.86
NUP88-211ENST00000575976 BAG4O95429 457 aaKnown RBP9.68□□□□□ -0.86
NUP88-211ENST00000575976 CCNE2O96020 404 aa9.68□□□□□ -0.86
NUP88-211ENST00000575976 OR52Z1P0C646 297 aa9.68□□□□□ -0.86
NUP88-211ENST00000575976 TXKP42681 527 aa9.68□□□□□ -0.86
NUP88-211ENST00000575976 MNX1P50219 401 aaPredicted RBP9.68□□□□□ -0.86
NUP88-211ENST00000575976 CEBPZQ03701 1054 aaKnown RBP9.68□□□□□ -0.86
NUP88-211ENST00000575976 C1QBPQ07021 282 aaKnown RBP9.68□□□□□ -0.86
NUP88-211ENST00000575976 PTGDRQ13258 359 aa9.68□□□□□ -0.86
NUP88-211ENST00000575976 LRRC41Q15345 812 aa9.68□□□□□ -0.86
NUP88-211ENST00000575976 SF3A1Q15459 793 aaKnown RBP9.68□□□□□ -0.86
NUP88-211ENST00000575976 LRCH2Q5VUJ6 765 aa9.68□□□□□ -0.86
NUP88-211ENST00000575976 RNF180Q86T96 592 aa9.68□□□□□ -0.86
NUP88-211ENST00000575976 EMID1Q96A84 441 aaPredicted RBP9.68□□□□□ -0.86
NUP88-211ENST00000575976 FAM20AQ96MK3 541 aa9.68□□□□□ -0.86
NUP88-211ENST00000575976 USP28Q96RU2 1077 aa9.68□□□□□ -0.86
NUP88-211ENST00000575976 RIT2Q99578 217 aa9.68□□□□□ -0.86
NUP88-211ENST00000575976 GPR20Q99678 358 aa9.68□□□□□ -0.86
NUP88-211ENST00000575976 TEKT3Q9BXF9 490 aa9.68□□□□□ -0.86
NUP88-211ENST00000575976 SPC25Q9HBM1 224 aa9.68□□□□□ -0.86
NUP88-211ENST00000575976 JPH1Q9HDC5 661 aaPredicted RBP9.68□□□□□ -0.86
NUP88-211ENST00000575976 TBC1D22BQ9NU19 505 aa9.68□□□□□ -0.86
NUP88-211ENST00000575976 TFIP11Q9UBB9 837 aaKnown RBP9.68□□□□□ -0.86
NUP88-211ENST00000575976 SLC9A2Q9UBY0 812 aa9.68□□□□□ -0.86
NUP88-211ENST00000575976 CLIC4Q9Y696 253 aa9.68□□□□□ -0.86
NUP88-211ENST00000575976 KIAA0100Q14667 2235 aaKnown RBP9.67□□□□□ -0.86
NUP88-211ENST00000575976 NOP56O00567 594 aaKnown RBP9.67□□□□□ -0.86
NUP88-211ENST00000575976 MMP3P08254 477 aa9.67□□□□□ -0.86
NUP88-211ENST00000575976 CST5P28325 142 aaPredicted RBP9.67□□□□□ -0.86
NUP88-211ENST00000575976 CPT1AP50416 773 aa9.67□□□□□ -0.86
NUP88-211ENST00000575976 ACTR2P61160 394 aa9.67□□□□□ -0.86
NUP88-211ENST00000575976 KCNA10Q16322 511 aa9.67□□□□□ -0.86
NUP88-211ENST00000575976 FSCN1Q16658 493 aaKnown RBP9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms