RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, human

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIITA-208	ENST00000572665	EDARADD	Q8WWZ3	215 aa		11.2	□□□□□ -0.62
CIITA-208	ENST00000572665	SHISA4	Q96DD7	197 aa		11.2	□□□□□ -0.62
CIITA-208	ENST00000572665	ASCC2	Q9H1I8	757 aa	Predicted RBP	11.2	□□□□□ -0.62
CIITA-208	ENST00000572665	METTL5	Q9NRN9	209 aa	Known RBP	11.2	□□□□□ -0.62
CIITA-208	ENST00000572665	TRIM33	Q9UPN9	1127 aa		11.2	□□□□□ -0.62
CIITA-208	ENST00000572665	MYO5A	Q9Y4I1	1855 aa	Known RBP	11.2	□□□□□ -0.62
CIITA-208	ENST00000572665	CENPF	P49454	3210 aa		11.19	□□□□□ -0.62
CIITA-208	ENST00000572665		H0YGN5	161 aa		11.19	□□□□□ -0.62
CIITA-208	ENST00000572665	HMMR	O75330	724 aa		11.19	□□□□□ -0.62
CIITA-208	ENST00000572665	RGS9	O75916	674 aa	Predicted RBP	11.19	□□□□□ -0.62
CIITA-208	ENST00000572665	HMGCR	P04035	888 aa		11.19	□□□□□ -0.62
CIITA-208	ENST00000572665	ST13	P50502	369 aa	Known RBP	11.19	□□□□□ -0.62
CIITA-208	ENST00000572665	PDE3A	Q14432	1141 aa		11.19	□□□□□ -0.62
CIITA-208	ENST00000572665	C20orf204	Q6ZNR8	217 aa		11.19	□□□□□ -0.62
CIITA-208	ENST00000572665	CCDC84	Q86UT8	332 aa	Predicted RBP	11.19	□□□□□ -0.62
CIITA-208	ENST00000572665	GPRC5A	Q8NFJ5	357 aa		11.19	□□□□□ -0.62
CIITA-208	ENST00000572665	NUDT8	Q8WV74	236 aa		11.19	□□□□□ -0.62
CIITA-208	ENST00000572665	SOCS4	Q8WXH5	440 aa		11.19	□□□□□ -0.62
CIITA-208	ENST00000572665	CCDC8	Q9H0W5	538 aa	Predicted RBP	11.19	□□□□□ -0.62
CIITA-208	ENST00000572665	CWC22	Q9HCG8	908 aa	Known RBP	11.19	□□□□□ -0.62
CIITA-208	ENST00000572665	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	11.19	□□□□□ -0.62
CIITA-208	ENST00000572665	MORF4L1	Q9UBU8	362 aa		11.19	□□□□□ -0.62
CIITA-208	ENST00000572665	DBNL	Q9UJU6	430 aa	Known RBP	11.19	□□□□□ -0.62
CIITA-208	ENST00000572665	PALD1	Q9ULE6	856 aa		11.19	□□□□□ -0.62
CIITA-208	ENST00000572665	PPM1H	Q9ULR3	514 aa		11.19	□□□□□ -0.62
CIITA-208	ENST00000572665	DOCK3	Q8IZD9	2030 aa		11.19	□□□□□ -0.62
CIITA-208	ENST00000572665	SIPA1L1	O43166	1804 aa		11.19	□□□□□ -0.62
CIITA-208	ENST00000572665	ZBED9	Q6R2W3	1325 aa		11.18	□□□□□ -0.62
CIITA-208	ENST00000572665	ALB	P02768	609 aa		11.18	□□□□□ -0.62
CIITA-208	ENST00000572665	ELN	P15502	786 aa		11.18	□□□□□ -0.62
CIITA-208	ENST00000572665	MAPK4	P31152	587 aa		11.18	□□□□□ -0.62
CIITA-208	ENST00000572665	USP14	P54578	494 aa		11.18	□□□□□ -0.62
CIITA-208	ENST00000572665	KANK3	Q6NY19	840 aa		11.18	□□□□□ -0.62
CIITA-208	ENST00000572665	CEP85	Q6P2H3	762 aa		11.18	□□□□□ -0.62
CIITA-208	ENST00000572665	TREML4	Q6UXN2	200 aa		11.18	□□□□□ -0.62
CIITA-208	ENST00000572665	CLASRP	Q8N2M8	674 aa	Known RBP	11.18	□□□□□ -0.62
CIITA-208	ENST00000572665	MAGEB6	Q8N7X4	407 aa		11.18	□□□□□ -0.62
CIITA-208	ENST00000572665	BSND	Q8WZ55	320 aa		11.18	□□□□□ -0.62
CIITA-208	ENST00000572665	DEFB118	Q96PH6	123 aa		11.18	□□□□□ -0.62
CIITA-208	ENST00000572665	FEZ1	Q99689	392 aa		11.18	□□□□□ -0.62
CIITA-208	ENST00000572665	ADAM19	Q9H013	955 aa		11.18	□□□□□ -0.62
CIITA-208	ENST00000572665	CABP5	Q9NP86	173 aa		11.18	□□□□□ -0.62
CIITA-208	ENST00000572665	PAK6	Q9NQU5	681 aa	Predicted RBP	11.18	□□□□□ -0.62
CIITA-208	ENST00000572665	SERPINB13	Q9UIV8	391 aa		11.18	□□□□□ -0.62
CIITA-208	ENST00000572665	ZBTB21	Q9ULJ3	1066 aa		11.18	□□□□□ -0.62
CIITA-208	ENST00000572665	RPTOR	Q8N122	1335 aa		11.17	□□□□□ -0.62
CIITA-208	ENST00000572665	SHISA8	B8ZZ34	492 aa		11.17	□□□□□ -0.62
CIITA-208	ENST00000572665	GLRX3	O76003	335 aa	Known RBP	11.17	□□□□□ -0.62
CIITA-208	ENST00000572665	ZNF76	P36508	570 aa		11.17	□□□□□ -0.62
CIITA-208	ENST00000572665	CCNA1	P78396	465 aa		11.17	□□□□□ -0.62
CIITA-208	ENST00000572665	LYPD4	Q6UWN0	246 aa		11.17	□□□□□ -0.62
CIITA-208	ENST00000572665	CHSY3	Q70JA7	882 aa		11.17	□□□□□ -0.62
CIITA-208	ENST00000572665	NECAB2	Q7Z6G3	386 aa		11.17	□□□□□ -0.62
CIITA-208	ENST00000572665	AACS	Q86V21	672 aa		11.17	□□□□□ -0.62
CIITA-208	ENST00000572665	RPAP2	Q8IXW5	612 aa	Predicted RBP	11.17	□□□□□ -0.62
CIITA-208	ENST00000572665	EAF2	Q96CJ1	260 aa	Predicted RBP	11.17	□□□□□ -0.62
CIITA-208	ENST00000572665	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	11.17	□□□□□ -0.62
CIITA-208	ENST00000572665	MUC3B	Q9H195	1237 aa		11.17	□□□□□ -0.62
CIITA-208	ENST00000572665	ZNF576	Q9H609	170 aa		11.17	□□□□□ -0.62
CIITA-208	ENST00000572665	ZFYVE1	Q9HBF4	777 aa		11.17	□□□□□ -0.62
CIITA-208	ENST00000572665	JPH1	Q9HDC5	661 aa	Predicted RBP	11.17	□□□□□ -0.62
CIITA-208	ENST00000572665	PIH1D3	Q9NQM4	214 aa	Known RBP	11.17	□□□□□ -0.62
CIITA-208	ENST00000572665	SAP30BP	Q9UHR5	308 aa	Known RBP	11.17	□□□□□ -0.62
CIITA-208	ENST00000572665	SOX13	Q9UN79	622 aa		11.17	□□□□□ -0.62
CIITA-208	ENST00000572665	GDF11	O95390	407 aa		11.16	□□□□□ -0.62
CIITA-208	ENST00000572665	CELA2B	P08218	269 aa	Predicted RBP	11.16	□□□□□ -0.62
CIITA-208	ENST00000572665	FXR1	P51114	621 aa	Known RBP eCLIP	11.16	□□□□□ -0.62
CIITA-208	ENST00000572665	HERVK_113	P62684	666 aa		11.16	□□□□□ -0.62
CIITA-208	ENST00000572665	CERKL	Q49MI3	558 aa	Predicted RBP	11.16	□□□□□ -0.62
CIITA-208	ENST00000572665	DIEXF	Q68CQ4	756 aa	Known RBP	11.16	□□□□□ -0.62
CIITA-208	ENST00000572665	UBE2Q1	Q7Z7E8	422 aa		11.16	□□□□□ -0.62
CIITA-208	ENST00000572665	ADGRA1	Q86SQ6	560 aa		11.16	□□□□□ -0.62
CIITA-208	ENST00000572665	KIF1BP	Q96EK5	621 aa		11.16	□□□□□ -0.62
CIITA-208	ENST00000572665	BTBD6	Q96KE9	485 aa		11.16	□□□□□ -0.62
CIITA-208	ENST00000572665	LACRT	Q9GZZ8	138 aa		11.16	□□□□□ -0.62
CIITA-208	ENST00000572665	DDX19B	Q9UMR2	479 aa		11.16	□□□□□ -0.62
CIITA-208	ENST00000572665	EXOC6B	Q9Y2D4	811 aa		11.16	□□□□□ -0.62
CIITA-208	ENST00000572665		A0A1W2PPC1	479 aa		11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	RAB11FIP3	O75154	756 aa		11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	GH2	P01242	217 aa		11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	IFIT2	P09913	472 aa	Known RBP	11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	RGS2	P41220	211 aa		11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	ERVK-24	P63145	666 aa		11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	DYNLL1	P63167	89 aa	Known RBP	11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	RRP1B	Q14684	758 aa	Known RBP	11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	RAB3GAP1	Q15042	981 aa		11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	ABCB5	Q2M3G0	1257 aa		11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	LCE2A	Q5TA79	106 aa	Predicted RBP	11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	GDF6	Q6KF10	455 aa	Predicted RBP	11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	TATDN1	Q6P1N9	297 aa		11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	AMOTL1	Q8IY63	956 aa		11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	MIGA1	Q8NAN2	632 aa		11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	RNF34	Q969K3	372 aa		11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	C12orf42	Q96LP6	360 aa		11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	P2RX7	Q99572	595 aa	Known RBP	11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	CRNKL1	Q9BZJ0	848 aa	Known RBP	11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	DNAJC18	Q9H819	358 aa		11.15	□□□□□ -0.62
CIITA-208	ENST00000572665	GJD2	Q9UKL4	321 aa		11.15	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms