RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 KCNQ1P51787 676 aa17.25■□□□□ 0.35
CLN3-236ENST00000568558 SEMA3FQ13275 785 aa17.25■□□□□ 0.35
CLN3-236ENST00000568558 PIBF1Q8WXW3 757 aa17.25■□□□□ 0.35
CLN3-236ENST00000568558 MAP3K14Q99558 947 aa17.25■□□□□ 0.35
CLN3-236ENST00000568558 RAD9AQ99638 391 aa17.25■□□□□ 0.35
CLN3-236ENST00000568558 TUT1Q9H6E5 874 aaKnown RBP17.25■□□□□ 0.35
CLN3-236ENST00000568558 EMSYQ7Z589 1322 aa17.24■□□□□ 0.35
CLN3-236ENST00000568558 C17orf102A2RUQ5 167 aa17.24■□□□□ 0.35
CLN3-236ENST00000568558 THPOP40225 353 aa17.24■□□□□ 0.35
CLN3-236ENST00000568558 METTL7BQ6UX53 244 aa17.24■□□□□ 0.35
CLN3-236ENST00000568558 ZNF654Q8IZM8 581 aa17.24■□□□□ 0.35
CLN3-236ENST00000568558 CTCFLQ8NI51 663 aaPredicted RBP17.24■□□□□ 0.35
CLN3-236ENST00000568558 ATP6V0A1Q93050 837 aa17.24■□□□□ 0.35
CLN3-236ENST00000568558 NECAB3Q96P71 396 aaPredicted RBP17.24■□□□□ 0.35
CLN3-236ENST00000568558 SPZ1Q9BXG8 430 aa17.24■□□□□ 0.35
CLN3-236ENST00000568558 LY9Q9HBG7 655 aa17.24■□□□□ 0.35
CLN3-236ENST00000568558 COG5Q9UP83 839 aa17.24■□□□□ 0.35
CLN3-236ENST00000568558 RBM8AQ9Y5S9 174 aaKnown RBP17.24■□□□□ 0.35
CLN3-236ENST00000568558 RALGAPA2Q2PPJ7 1873 aa17.24■□□□□ 0.35
CLN3-236ENST00000568558 RSPH10B2B2RC85 870 aa17.23■□□□□ 0.35
CLN3-236ENST00000568558 SPATA31C2B4DYI2 1134 aa17.23■□□□□ 0.35
CLN3-236ENST00000568558 NOP56O00567 594 aaKnown RBP17.23■□□□□ 0.35
CLN3-236ENST00000568558 FIBPO43427 364 aa17.23■□□□□ 0.35
CLN3-236ENST00000568558 DDAH1O94760 285 aa17.23■□□□□ 0.35
CLN3-236ENST00000568558 RSPH10BP0C881 870 aa17.23■□□□□ 0.35
CLN3-236ENST00000568558 SMIM10L2AP0DMW4 78 aa17.23■□□□□ 0.35
CLN3-236ENST00000568558 SMIM10L2BP0DMW5 78 aa17.23■□□□□ 0.35
CLN3-236ENST00000568558 MKRN4PQ13434 485 aaPredicted RBP17.23■□□□□ 0.35
CLN3-236ENST00000568558 NEDD9Q14511 834 aa17.23■□□□□ 0.35
CLN3-236ENST00000568558 CYFIP1Q7L576 1253 aa17.23■□□□□ 0.35
CLN3-236ENST00000568558 DBF4BQ8NFT6 615 aa17.23■□□□□ 0.35
CLN3-236ENST00000568558 GDPD5Q8WTR4 605 aa17.23■□□□□ 0.35
CLN3-236ENST00000568558 MTA3Q9BTC8 594 aa17.23■□□□□ 0.35
CLN3-236ENST00000568558 MYL10Q9BUA6 226 aa17.23■□□□□ 0.35
CLN3-236ENST00000568558 USP26Q9BXU7 913 aa17.23■□□□□ 0.35
CLN3-236ENST00000568558 RNPEPQ9H4A4 650 aa17.23■□□□□ 0.35
CLN3-236ENST00000568558 LMCD1Q9NZU5 365 aa17.23■□□□□ 0.35
CLN3-236ENST00000568558 LINC01553A4QN01 128 aa17.22■□□□□ 0.35
CLN3-236ENST00000568558 PIK3CDO00329 1044 aa17.22■□□□□ 0.35
CLN3-236ENST00000568558 TREHO43280 583 aa17.22■□□□□ 0.35
CLN3-236ENST00000568558 SMARCA1P28370 1054 aa17.22■□□□□ 0.35
CLN3-236ENST00000568558 ERVK-21P61565 698 aa17.22■□□□□ 0.35
CLN3-236ENST00000568558 PLEKHG4Q58EX7 1191 aa17.22■□□□□ 0.35
CLN3-236ENST00000568558 FAM117BQ6P1L5 589 aa17.22■□□□□ 0.35
CLN3-236ENST00000568558 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.22■□□□□ 0.35
CLN3-236ENST00000568558 RRP36Q96EU6 259 aaKnown RBP17.22■□□□□ 0.35
CLN3-236ENST00000568558 TGS1Q96RS0 853 aaKnown RBP17.22■□□□□ 0.35
CLN3-236ENST00000568558 GPR20Q99678 358 aa17.22■□□□□ 0.35
CLN3-236ENST00000568558 SUGCTQ9HAC7 445 aa17.22■□□□□ 0.35
CLN3-236ENST00000568558 RTEL1Q9NZ71 1219 aa17.22■□□□□ 0.35
CLN3-236ENST00000568558 MTUS1Q9ULD2 1270 aa17.22■□□□□ 0.35
CLN3-236ENST00000568558 COL4A6Q14031 1691 aa17.21■□□□□ 0.35
CLN3-236ENST00000568558 MEIS2O14770 477 aa17.21■□□□□ 0.35
CLN3-236ENST00000568558 KIF5BP33176 963 aa17.21■□□□□ 0.35
CLN3-236ENST00000568558 PCNX4Q63HM2 1172 aa17.21■□□□□ 0.35
CLN3-236ENST00000568558 USP17L6PQ6QN14 398 aa17.21■□□□□ 0.35
CLN3-236ENST00000568558 CASC1Q6TDU7 716 aa17.21■□□□□ 0.35
CLN3-236ENST00000568558 TRIM50Q86XT4 487 aa17.21■□□□□ 0.35
CLN3-236ENST00000568558 SMARCC2Q8TAQ2 1214 aa17.21■□□□□ 0.35
CLN3-236ENST00000568558 CUL5Q93034 780 aa17.21■□□□□ 0.35
CLN3-236ENST00000568558 TELO2Q9Y4R8 837 aa17.21■□□□□ 0.35
CLN3-236ENST00000568558 ATG2AQ2TAZ0 1938 aa17.21■□□□□ 0.35
CLN3-236ENST00000568558 LOXHD1Q8IVV2 1947 aa17.2■□□□□ 0.34
CLN3-236ENST00000568558 PRC1O43663 620 aa17.2■□□□□ 0.34
CLN3-236ENST00000568558 CAND2O75155 1236 aa17.2■□□□□ 0.34
CLN3-236ENST00000568558 PLEKHA8P1O95397 391 aa17.2■□□□□ 0.34
CLN3-236ENST00000568558 AMHP03971 560 aa17.2■□□□□ 0.34
CLN3-236ENST00000568558 HTRA4P83105 476 aaPredicted RBP17.2■□□□□ 0.34
CLN3-236ENST00000568558 XRRA1Q6P2D8 792 aa17.2■□□□□ 0.34
CLN3-236ENST00000568558 MYOCDQ8IZQ8 938 aa17.2■□□□□ 0.34
CLN3-236ENST00000568558 HLA-CQ95604 372 aa17.2■□□□□ 0.34
CLN3-236ENST00000568558 SENP7Q9BQF6 1050 aa17.2■□□□□ 0.34
CLN3-236ENST00000568558 LZTS2Q9BRK4 669 aa17.2■□□□□ 0.34
CLN3-236ENST00000568558 SETD4Q9NVD3 440 aa17.2■□□□□ 0.34
CLN3-236ENST00000568558 SEC63Q9UGP8 760 aaKnown RBP17.2■□□□□ 0.34
CLN3-236ENST00000568558 ZNF215Q9UL58 517 aaPredicted RBP17.2■□□□□ 0.34
CLN3-236ENST00000568558 INSL6Q9Y581 213 aa17.2■□□□□ 0.34
CLN3-236ENST00000568558 SH2B2O14492 632 aaPredicted RBP17.19■□□□□ 0.34
CLN3-236ENST00000568558 CTSHP09668 335 aa17.19■□□□□ 0.34
CLN3-236ENST00000568558 GNAT1P11488 350 aa17.19■□□□□ 0.34
CLN3-236ENST00000568558 COL9A1P20849 921 aa17.19■□□□□ 0.34
CLN3-236ENST00000568558 MCM5P33992 734 aa17.19■□□□□ 0.34
CLN3-236ENST00000568558 GNAQP50148 359 aa17.19■□□□□ 0.34
CLN3-236ENST00000568558 ADAM17P78536 824 aa17.19■□□□□ 0.34
CLN3-236ENST00000568558 COL9A3Q14050 684 aaPredicted RBP17.19■□□□□ 0.34
CLN3-236ENST00000568558 UTP14CQ5TAP6 766 aaKnown RBP17.19■□□□□ 0.34
CLN3-236ENST00000568558 NLRX1Q86UT6 975 aa17.19■□□□□ 0.34
CLN3-236ENST00000568558 SRBD1Q8N5C6 995 aaKnown RBP17.19■□□□□ 0.34
CLN3-236ENST00000568558 SP7Q8TDD2 431 aaPredicted RBP17.19■□□□□ 0.34
CLN3-236ENST00000568558 TMEM87BQ96K49 555 aa17.19■□□□□ 0.34
CLN3-236ENST00000568558 OSBPL7Q9BZF2 842 aa17.19■□□□□ 0.34
CLN3-236ENST00000568558 LSG1Q9H089 658 aaKnown RBP17.19■□□□□ 0.34
CLN3-236ENST00000568558 CCDC69A6NI79 296 aa17.18■□□□□ 0.34
CLN3-236ENST00000568558 SP4Q02446 784 aa17.18■□□□□ 0.34
CLN3-236ENST00000568558 NFXL1Q6ZNB6 911 aa17.18■□□□□ 0.34
CLN3-236ENST00000568558 CMTR1Q8N1G2 835 aaKnown RBP17.18■□□□□ 0.34
CLN3-236ENST00000568558 TMTC2Q8N394 836 aa17.18■□□□□ 0.34
CLN3-236ENST00000568558 LMBR1Q8WVP7 490 aa17.18■□□□□ 0.34
CLN3-236ENST00000568558 SEPT8Q92599 483 aa17.18■□□□□ 0.34
CLN3-236ENST00000568558 SLC27A2O14975 620 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms