RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 H2AFB2P0C5Z0 115 aa7.17□□□□□ -1.26
VPS39-209ENST00000568029 ACRP10323 421 aa7.17□□□□□ -1.26
VPS39-209ENST00000568029 PDE6BP35913 854 aa7.17□□□□□ -1.26
VPS39-209ENST00000568029 SERINC3Q13530 473 aa7.17□□□□□ -1.26
VPS39-209ENST00000568029 CEP85Q6P2H3 762 aa7.17□□□□□ -1.26
VPS39-209ENST00000568029 PRR23CQ6ZRP0 262 aa7.17□□□□□ -1.26
VPS39-209ENST00000568029 TTC6Q86TZ1 520 aa7.17□□□□□ -1.26
VPS39-209ENST00000568029 GPC2Q8N158 579 aa7.17□□□□□ -1.26
VPS39-209ENST00000568029 CNBD1Q8NA66 436 aa7.17□□□□□ -1.26
VPS39-209ENST00000568029 MKL1Q969V6 931 aa7.17□□□□□ -1.26
VPS39-209ENST00000568029 SLC9A7Q96T83 725 aa7.17□□□□□ -1.26
VPS39-209ENST00000568029 PHAXQ9H814 394 aaKnown RBP7.17□□□□□ -1.26
VPS39-209ENST00000568029 ACTR10Q9NZ32 417 aa7.17□□□□□ -1.26
VPS39-209ENST00000568029 HDAC5Q9UQL6 1122 aa7.17□□□□□ -1.26
VPS39-209ENST00000568029 R3HCC1Q9Y3T6 440 aaKnown RBP7.17□□□□□ -1.26
VPS39-209ENST00000568029 SIPA1L3O60292 1781 aaPredicted RBP7.17□□□□□ -1.26
VPS39-209ENST00000568029 RANBP2P49792 3224 aaKnown RBP7.17□□□□□ -1.26
VPS39-209ENST00000568029 A0A0C4DFX4 3053 aa7.16□□□□□ -1.26
VPS39-209ENST00000568029 HSP90AB1P08238 724 aaKnown RBP7.16□□□□□ -1.26
VPS39-209ENST00000568029 EIF2S2P20042 333 aaKnown RBP7.16□□□□□ -1.26
VPS39-209ENST00000568029 PIP4K2AP48426 406 aaPredicted RBP7.16□□□□□ -1.26
VPS39-209ENST00000568029 EIF5P55010 431 aaKnown RBP7.16□□□□□ -1.26
VPS39-209ENST00000568029 ZNF746Q6NUN9 644 aaPredicted RBP7.16□□□□□ -1.26
VPS39-209ENST00000568029 LRP10Q7Z4F1 713 aa7.16□□□□□ -1.26
VPS39-209ENST00000568029 TP53INP1Q96A56 240 aa7.16□□□□□ -1.26
VPS39-209ENST00000568029 MASTLQ96GX5 879 aa7.16□□□□□ -1.26
VPS39-209ENST00000568029 COX4I2Q96KJ9 171 aa7.16□□□□□ -1.26
VPS39-209ENST00000568029 DHRS1Q96LJ7 313 aa7.16□□□□□ -1.26
VPS39-209ENST00000568029 DNAJC2Q99543 621 aaKnown RBP7.16□□□□□ -1.26
VPS39-209ENST00000568029 MEIS3Q99687 375 aa7.16□□□□□ -1.26
VPS39-209ENST00000568029 C22orf23Q9BZE7 217 aa7.16□□□□□ -1.26
VPS39-209ENST00000568029 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.16□□□□□ -1.26
VPS39-209ENST00000568029 KCNF1Q9H3M0 494 aa7.16□□□□□ -1.26
VPS39-209ENST00000568029 RNF186Q9NXI6 227 aa7.16□□□□□ -1.26
VPS39-209ENST00000568029 SIRPGQ9P1W8 387 aa7.16□□□□□ -1.26
VPS39-209ENST00000568029 AKAP11Q9UKA4 1901 aa7.16□□□□□ -1.26
VPS39-209ENST00000568029 UNC80Q8N2C7 3258 aa7.16□□□□□ -1.26
VPS39-209ENST00000568029 RBBP6Q7Z6E9 1792 aaKnown RBP7.15□□□□□ -1.26
VPS39-209ENST00000568029 DYNC1LI2O43237 492 aaPredicted RBP7.15□□□□□ -1.26
VPS39-209ENST00000568029 CDC45O75419 566 aa7.15□□□□□ -1.26
VPS39-209ENST00000568029 ATP8B2P98198 1209 aa7.15□□□□□ -1.26
VPS39-209ENST00000568029 FXNQ16595 210 aa7.15□□□□□ -1.26
VPS39-209ENST00000568029 CASC1Q6TDU7 716 aa7.15□□□□□ -1.26
VPS39-209ENST00000568029 UNC5AQ6ZN44 842 aa7.15□□□□□ -1.26
VPS39-209ENST00000568029 RUFY4Q6ZNE9 571 aa7.15□□□□□ -1.26
VPS39-209ENST00000568029 PHACTR4Q8IZ21 702 aa7.15□□□□□ -1.26
VPS39-209ENST00000568029 DNAJB8Q8NHS0 232 aa7.15□□□□□ -1.26
VPS39-209ENST00000568029 PPP1R13LQ8WUF5 828 aa7.15□□□□□ -1.26
VPS39-209ENST00000568029 GATA6Q92908 595 aa7.15□□□□□ -1.26
VPS39-209ENST00000568029 C7orf69Q9H7B7 122 aa7.15□□□□□ -1.26
VPS39-209ENST00000568029 TPSG1Q9NRR2 321 aa7.15□□□□□ -1.26
VPS39-209ENST00000568029 STOML1Q9UBI4 398 aa7.15□□□□□ -1.26
VPS39-209ENST00000568029 DBF4Q9UBU7 674 aaPredicted RBP7.15□□□□□ -1.26
VPS39-209ENST00000568029 CEP131Q9UPN4 1083 aa7.15□□□□□ -1.26
VPS39-209ENST00000568029 ABCC12Q96J65 1359 aa7.15□□□□□ -1.26
VPS39-209ENST00000568029 KDM3BQ7LBC6 1761 aa7.15□□□□□ -1.27
VPS39-209ENST00000568029 SPTBN5Q9NRC6 3674 aaKnown RBP7.14□□□□□ -1.27
VPS39-209ENST00000568029 GSC2O15499 205 aa7.14□□□□□ -1.27
VPS39-209ENST00000568029 UBOX5O94941 541 aa7.14□□□□□ -1.27
VPS39-209ENST00000568029 CAMTA2O94983 1202 aa7.14□□□□□ -1.27
VPS39-209ENST00000568029 SLITRK5O94991 958 aa7.14□□□□□ -1.27
VPS39-209ENST00000568029 DDX58O95786 925 aaKnown RBP7.14□□□□□ -1.27
VPS39-209ENST00000568029 IGHA1P01876 353 aa7.14□□□□□ -1.27
VPS39-209ENST00000568029 UBTFL1P0CB47 393 aaPredicted RBP7.14□□□□□ -1.27
VPS39-209ENST00000568029 ETV3P41162 512 aa7.14□□□□□ -1.27
VPS39-209ENST00000568029 KIF23Q02241 960 aaPredicted RBP7.14□□□□□ -1.27
VPS39-209ENST00000568029 NFKBIBQ15653 356 aa7.14□□□□□ -1.27
VPS39-209ENST00000568029 CPSF6Q16630 551 aaKnown RBP eCLIP7.14□□□□□ -1.27
VPS39-209ENST00000568029 BBS9Q3SYG4 887 aa7.14□□□□□ -1.27
VPS39-209ENST00000568029 RNF43Q68DV7 783 aa7.14□□□□□ -1.27
VPS39-209ENST00000568029 LETMD1Q6P1Q0 360 aa7.14□□□□□ -1.27
VPS39-209ENST00000568029 CTU1Q7Z7A3 348 aaKnown RBP7.14□□□□□ -1.27
VPS39-209ENST00000568029 ZAR1Q86SH2 424 aa7.14□□□□□ -1.27
VPS39-209ENST00000568029 HNRNPLLQ8WVV9 542 aaKnown RBP7.14□□□□□ -1.27
VPS39-209ENST00000568029 DPH2Q9BQC3 489 aaPredicted RBP7.14□□□□□ -1.27
VPS39-209ENST00000568029 TRIM55Q9BYV6 548 aa7.14□□□□□ -1.27
VPS39-209ENST00000568029 SLC52A2Q9HAB3 445 aa7.14□□□□□ -1.27
VPS39-209ENST00000568029 HYPKQ9NX55 129 aa7.14□□□□□ -1.27
VPS39-209ENST00000568029 MSRB2Q9Y3D2 182 aa7.14□□□□□ -1.27
VPS39-209ENST00000568029 RAB11FIP3O75154 756 aa7.13□□□□□ -1.27
VPS39-209ENST00000568029 PMS1P54277 932 aaKnown RBP7.13□□□□□ -1.27
VPS39-209ENST00000568029 HUNKP57058 714 aa7.13□□□□□ -1.27
VPS39-209ENST00000568029 CYP27A1Q02318 531 aa7.13□□□□□ -1.27
VPS39-209ENST00000568029 NCAPHQ15003 741 aa7.13□□□□□ -1.27
VPS39-209ENST00000568029 DDR2Q16832 855 aa7.13□□□□□ -1.27
VPS39-209ENST00000568029 TTC22Q5TAA0 569 aa7.13□□□□□ -1.27
VPS39-209ENST00000568029 OGFOD3Q6PK18 319 aa7.13□□□□□ -1.27
VPS39-209ENST00000568029 DPH6Q7L8W6 267 aa7.13□□□□□ -1.27
VPS39-209ENST00000568029 DNAAF4Q8WXU2 420 aa7.13□□□□□ -1.27
VPS39-209ENST00000568029 KIF2CQ99661 725 aa7.13□□□□□ -1.27
VPS39-209ENST00000568029 DUSP23Q9BVJ7 150 aa7.13□□□□□ -1.27
VPS39-209ENST00000568029 OSBPL2Q9H1P3 480 aa7.13□□□□□ -1.27
VPS39-209ENST00000568029 TNKS2Q9H2K2 1166 aa7.13□□□□□ -1.27
VPS39-209ENST00000568029 GPRC5DQ9NZD1 345 aa7.13□□□□□ -1.27
VPS39-209ENST00000568029 SUCOQ9UBS9 1254 aaKnown RBP7.13□□□□□ -1.27
VPS39-209ENST00000568029 ZNF214Q9UL59 606 aaPredicted RBP7.13□□□□□ -1.27
VPS39-209ENST00000568029 LAMA3Q16787 3333 aa7.13□□□□□ -1.27
VPS39-209ENST00000568029 ADM5C9JUS6 153 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 KCNQ3O43525 872 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 ALDH1L1O75891 902 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms