RNA–Protein interactions for RNA: ENST00000565990.2

SF3B3-206, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-206ENST00000565990 FRMPD3Q5JV73 1810 aa14.28□□□□□ -0.12
SF3B3-206ENST00000565990 CELF3Q5SZQ8 465 aaKnown RBP14.28□□□□□ -0.12
SF3B3-206ENST00000565990 FAM173BQ6P4H8 233 aa14.28□□□□□ -0.12
SF3B3-206ENST00000565990 B3GNT9Q6UX72 402 aa14.28□□□□□ -0.12
SF3B3-206ENST00000565990 RIT2Q99578 217 aa14.28□□□□□ -0.12
SF3B3-206ENST00000565990 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.28□□□□□ -0.12
SF3B3-206ENST00000565990 UPF3AQ9H1J1 476 aaKnown RBP14.28□□□□□ -0.12
SF3B3-206ENST00000565990 TBC1D22BQ9NU19 505 aa14.28□□□□□ -0.12
SF3B3-206ENST00000565990 MORC2Q9Y6X9 1032 aaPredicted RBP14.28□□□□□ -0.12
SF3B3-206ENST00000565990 LAD1O00515 517 aa14.27□□□□□ -0.13
SF3B3-206ENST00000565990 CTAGE5O15320 804 aa14.27□□□□□ -0.13
SF3B3-206ENST00000565990 PSMD10O75832 226 aa14.27□□□□□ -0.13
SF3B3-206ENST00000565990 MBD3O95983 291 aa14.27□□□□□ -0.13
SF3B3-206ENST00000565990 CAPN2P17655 700 aa14.27□□□□□ -0.13
SF3B3-206ENST00000565990 ATP2B1P20020 1258 aa14.27□□□□□ -0.13
SF3B3-206ENST00000565990 MCM7P33993 719 aa14.27□□□□□ -0.13
SF3B3-206ENST00000565990 GJA9P57773 515 aa14.27□□□□□ -0.13
SF3B3-206ENST00000565990 ARHGAP1Q07960 439 aa14.27□□□□□ -0.13
SF3B3-206ENST00000565990 CCDC173Q0VFZ6 552 aa14.27□□□□□ -0.13
SF3B3-206ENST00000565990 LAMC2Q13753 1193 aa14.27□□□□□ -0.13
SF3B3-206ENST00000565990 PTPAQ15257 358 aa14.27□□□□□ -0.13
SF3B3-206ENST00000565990 METTL7BQ6UX53 244 aa14.27□□□□□ -0.13
SF3B3-206ENST00000565990 ANP32BQ92688 251 aaKnown RBP14.27□□□□□ -0.13
SF3B3-206ENST00000565990 ZNF577Q9BSK1 485 aa14.27□□□□□ -0.13
SF3B3-206ENST00000565990 CRISPLD2Q9H0B8 497 aa14.27□□□□□ -0.13
SF3B3-206ENST00000565990 RNF208Q9H0X6 261 aa14.27□□□□□ -0.13
SF3B3-206ENST00000565990 TMEM60Q9H2L4 133 aa14.27□□□□□ -0.13
SF3B3-206ENST00000565990 A6NJR5 290 aa14.26□□□□□ -0.13
SF3B3-206ENST00000565990 DYNC1LI2O43237 492 aaPredicted RBP14.26□□□□□ -0.13
SF3B3-206ENST00000565990 NEMFO60524 1076 aa14.26□□□□□ -0.13
SF3B3-206ENST00000565990 ADAMTS4O75173 837 aa14.26□□□□□ -0.13
SF3B3-206ENST00000565990 FARP2O94887 1054 aaPredicted RBP14.26□□□□□ -0.13
SF3B3-206ENST00000565990 ATG7O95352 703 aa14.26□□□□□ -0.13
SF3B3-206ENST00000565990 SGPL1O95470 568 aa14.26□□□□□ -0.13
SF3B3-206ENST00000565990 GH1P01241 217 aa14.26□□□□□ -0.13
SF3B3-206ENST00000565990 GJB1P08034 283 aa14.26□□□□□ -0.13
SF3B3-206ENST00000565990 RARBP10826 455 aa14.26□□□□□ -0.13
SF3B3-206ENST00000565990 UBA1P22314 1058 aaKnown RBP14.26□□□□□ -0.13
SF3B3-206ENST00000565990 PRPHP41219 470 aa14.26□□□□□ -0.13
SF3B3-206ENST00000565990 PTGDRQ13258 359 aa14.26□□□□□ -0.13
SF3B3-206ENST00000565990 HS1BP3Q53T59 392 aa14.26□□□□□ -0.13
SF3B3-206ENST00000565990 ANO1Q5XXA6 986 aa14.26□□□□□ -0.13
SF3B3-206ENST00000565990 CCSAPQ6IQ19 270 aaPredicted RBP14.26□□□□□ -0.13
SF3B3-206ENST00000565990 DHX37Q8IY37 1157 aaKnown RBP14.26□□□□□ -0.13
SF3B3-206ENST00000565990 SLFN12Q8IYM2 578 aa14.26□□□□□ -0.13
SF3B3-206ENST00000565990 KLHDC9Q8NEP7 349 aa14.26□□□□□ -0.13
SF3B3-206ENST00000565990 COPS5Q92905 334 aa14.26□□□□□ -0.13
SF3B3-206ENST00000565990 POLR3EQ9NVU0 708 aa14.26□□□□□ -0.13
SF3B3-206ENST00000565990 OGDHLQ9ULD0 1010 aa14.26□□□□□ -0.13
SF3B3-206ENST00000565990 ATP6V1DQ9Y5K8 247 aa14.26□□□□□ -0.13
SF3B3-206ENST00000565990 CLIC4Q9Y696 253 aa14.26□□□□□ -0.13
SF3B3-206ENST00000565990 GGPS1O95749 300 aa14.25□□□□□ -0.13
SF3B3-206ENST00000565990 BMP15O95972 392 aa14.25□□□□□ -0.13
SF3B3-206ENST00000565990 HOXD8P13378 290 aaPredicted RBP14.25□□□□□ -0.13
SF3B3-206ENST00000565990 NASPP49321 788 aaPredicted RBP14.25□□□□□ -0.13
SF3B3-206ENST00000565990 ATP2C1P98194 919 aaPredicted RBP14.25□□□□□ -0.13
SF3B3-206ENST00000565990 PDIA5Q14554 519 aa14.25□□□□□ -0.13
SF3B3-206ENST00000565990 SF3A1Q15459 793 aaKnown RBP14.25□□□□□ -0.13
SF3B3-206ENST00000565990 CALCRLQ16602 461 aa14.25□□□□□ -0.13
SF3B3-206ENST00000565990 GJC2Q5T442 439 aaPredicted RBP14.25□□□□□ -0.13
SF3B3-206ENST00000565990 FOXD4L5Q5VV16 416 aaPredicted RBP14.25□□□□□ -0.13
SF3B3-206ENST00000565990 CYFIP1Q7L576 1253 aa14.25□□□□□ -0.13
SF3B3-206ENST00000565990 PPTC7Q8NI37 304 aa14.25□□□□□ -0.13
SF3B3-206ENST00000565990 FOXD4L4Q8WXT5 416 aaPredicted RBP14.25□□□□□ -0.13
SF3B3-206ENST00000565990 ZNF396Q96N95 335 aaPredicted RBP14.25□□□□□ -0.13
SF3B3-206ENST00000565990 USP28Q96RU2 1077 aa14.25□□□□□ -0.13
SF3B3-206ENST00000565990 PPP1R9BQ96SB3 815 aa14.25□□□□□ -0.13
SF3B3-206ENST00000565990 PCDHA12Q9UN75 941 aa14.25□□□□□ -0.13
SF3B3-206ENST00000565990 GSTTP1A0A1W2PQM5 241 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 PPFIA4O75335 1185 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 CCNE2O96020 404 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 PTGS1P23219 599 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 CST5P28325 142 aaPredicted RBP14.24□□□□□ -0.13
SF3B3-206ENST00000565990 GJA8P48165 433 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 SPIRE1Q08AE8 756 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 PPP2R5CQ13362 524 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 SLC39A14Q15043 492 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 IL17AQ16552 155 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 HSDL1Q3SXM5 330 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 ARL6IP4Q66PJ3 421 aaKnown RBP14.24□□□□□ -0.13
SF3B3-206ENST00000565990 ZNF746Q6NUN9 644 aaPredicted RBP14.24□□□□□ -0.13
SF3B3-206ENST00000565990 TLK2Q86UE8 772 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 SEPT1Q8WYJ6 367 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 GJA10Q969M2 543 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 DEFB118Q96PH6 123 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 GPR20Q99678 358 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 SDF4Q9BRK5 362 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 AP5M1Q9H0R1 490 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 MLXIPQ9HAP2 919 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 JPH1Q9HDC5 661 aaPredicted RBP14.24□□□□□ -0.13
SF3B3-206ENST00000565990 XPNPEP3Q9NQH7 507 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 TFIP11Q9UBB9 837 aaKnown RBP14.24□□□□□ -0.13
SF3B3-206ENST00000565990 SLC9A2Q9UBY0 812 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 RCOR1Q9UKL0 485 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 VAV3Q9UKW4 847 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 CFAP45Q9UL16 551 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 CEP131Q9UPN4 1083 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 TELO2Q9Y4R8 837 aa14.24□□□□□ -0.13
SF3B3-206ENST00000565990 MYH9P35579 1960 aaKnown RBP14.23□□□□□ -0.13
SF3B3-206ENST00000565990 SYNRGQ9UMZ2 1314 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms