RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 PMLP29590 882 aa6.33□□□□□ -1.4
VPS35-205ENST00000563984 FOXO4P98177 505 aa6.33□□□□□ -1.4
VPS35-205ENST00000563984 ZFYVE27Q5T4F4 411 aa6.33□□□□□ -1.4
VPS35-205ENST00000563984 DENND5AQ6IQ26 1287 aa6.33□□□□□ -1.4
VPS35-205ENST00000563984 LRRC47Q8N1G4 583 aaKnown RBP6.33□□□□□ -1.4
VPS35-205ENST00000563984 MSL3Q8N5Y2 521 aaKnown RBP6.33□□□□□ -1.4
VPS35-205ENST00000563984 TEPSINQ96N21 525 aa6.33□□□□□ -1.4
VPS35-205ENST00000563984 AARSD1Q9BTE6 412 aaKnown RBP6.33□□□□□ -1.4
VPS35-205ENST00000563984 IER2Q9BTL4 223 aa6.33□□□□□ -1.4
VPS35-205ENST00000563984 CCDC113Q9H0I3 377 aa6.33□□□□□ -1.4
VPS35-205ENST00000563984 ADAM7Q9H2U9 754 aa6.33□□□□□ -1.4
VPS35-205ENST00000563984 BCAS3Q9H6U6 928 aa6.33□□□□□ -1.4
VPS35-205ENST00000563984 PCDHA2Q9Y5H9 948 aa6.33□□□□□ -1.4
VPS35-205ENST00000563984 FANCIQ9NVI1 1328 aa6.32□□□□□ -1.4
VPS35-205ENST00000563984 SH3BP5O60239 455 aa6.32□□□□□ -1.4
VPS35-205ENST00000563984 FGFR1P11362 822 aa6.32□□□□□ -1.4
VPS35-205ENST00000563984 FPR2P25090 351 aa6.32□□□□□ -1.4
VPS35-205ENST00000563984 POLD1P28340 1107 aa6.32□□□□□ -1.4
VPS35-205ENST00000563984 CACNB2Q08289 660 aaPredicted RBP6.32□□□□□ -1.4
VPS35-205ENST00000563984 CCDC181Q5TID7 509 aa6.32□□□□□ -1.4
VPS35-205ENST00000563984 ZNF280DQ6N043 979 aa6.32□□□□□ -1.4
VPS35-205ENST00000563984 RSPO2Q6UXX9 243 aaPredicted RBP6.32□□□□□ -1.4
VPS35-205ENST00000563984 B3GNT8Q7Z7M8 397 aa6.32□□□□□ -1.4
VPS35-205ENST00000563984 ADGRG2Q8IZP9 1017 aa6.32□□□□□ -1.4
VPS35-205ENST00000563984 LINC01356Q8N9X3 169 aa6.32□□□□□ -1.4
VPS35-205ENST00000563984 SIRPGQ9P1W8 387 aa6.32□□□□□ -1.4
VPS35-205ENST00000563984 COA3Q9Y2R0 106 aaPredicted RBP6.32□□□□□ -1.4
VPS35-205ENST00000563984 SIT1Q9Y3P8 196 aa6.32□□□□□ -1.4
VPS35-205ENST00000563984 RPS6KL1Q9Y6S9 549 aa6.32□□□□□ -1.4
VPS35-205ENST00000563984 PDPK1O15530 556 aa6.31□□□□□ -1.4
VPS35-205ENST00000563984 SGSM2O43147 1006 aa6.31□□□□□ -1.4
VPS35-205ENST00000563984 DLX3O60479 287 aa6.31□□□□□ -1.4
VPS35-205ENST00000563984 PPFIA4O75335 1185 aa6.31□□□□□ -1.4
VPS35-205ENST00000563984 LCP1P13796 627 aa6.31□□□□□ -1.4
VPS35-205ENST00000563984 GTF2F1P35269 517 aaKnown RBP eCLIP6.31□□□□□ -1.4
VPS35-205ENST00000563984 HTRA3P83110 453 aa6.31□□□□□ -1.4
VPS35-205ENST00000563984 RASGRF1Q13972 1273 aa6.31□□□□□ -1.4
VPS35-205ENST00000563984 CHRNA2Q15822 529 aa6.31□□□□□ -1.4
VPS35-205ENST00000563984 NLRP10Q86W26 655 aa6.31□□□□□ -1.4
VPS35-205ENST00000563984 NBPF5PQ86XG9 351 aaPredicted RBP6.31□□□□□ -1.4
VPS35-205ENST00000563984 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.31□□□□□ -1.4
VPS35-205ENST00000563984 SMC5Q8IY18 1101 aa6.31□□□□□ -1.4
VPS35-205ENST00000563984 TP53I13Q8NBR0 393 aaPredicted RBP6.31□□□□□ -1.4
VPS35-205ENST00000563984 SREK1Q8WXA9 508 aaKnown RBP6.31□□□□□ -1.4
VPS35-205ENST00000563984 CHAMP1Q96JM3 812 aa6.31□□□□□ -1.4
VPS35-205ENST00000563984 METTL14Q9HCE5 456 aaKnown RBP6.31□□□□□ -1.4
VPS35-205ENST00000563984 JADE2Q9NQC1 790 aa6.31□□□□□ -1.4
VPS35-205ENST00000563984 ARHGEF4Q9NR80 690 aa6.31□□□□□ -1.4
VPS35-205ENST00000563984 GPR27Q9NS67 375 aa6.31□□□□□ -1.4
VPS35-205ENST00000563984 FRMD4BQ9Y2L6 1034 aa6.31□□□□□ -1.4
VPS35-205ENST00000563984 PMF1-BGLAPU3KQ54 211 aa6.31□□□□□ -1.4
VPS35-205ENST00000563984 TRAV20A0A0B4J274 112 aa6.3□□□□□ -1.4
VPS35-205ENST00000563984 A0A1B0GTL3 188 aa6.3□□□□□ -1.4
VPS35-205ENST00000563984 CREB3O43889 395 aa6.3□□□□□ -1.4
VPS35-205ENST00000563984 HSP90AA1P07900 732 aaKnown RBP6.3□□□□□ -1.4
VPS35-205ENST00000563984 MC3RP41968 323 aa6.3□□□□□ -1.4
VPS35-205ENST00000563984 PLP2Q04941 152 aa6.3□□□□□ -1.4
VPS35-205ENST00000563984 RBL2Q08999 1139 aa6.3□□□□□ -1.4
VPS35-205ENST00000563984 MIB1Q86YT6 1006 aa6.3□□□□□ -1.4
VPS35-205ENST00000563984 FNIP1Q8TF40 1166 aa6.3□□□□□ -1.4
VPS35-205ENST00000563984 DCAF4Q8WV16 495 aa6.3□□□□□ -1.4
VPS35-205ENST00000563984 PCDH18Q9HCL0 1135 aa6.3□□□□□ -1.4
VPS35-205ENST00000563984 TMEM51Q9NW97 253 aa6.3□□□□□ -1.4
VPS35-205ENST00000563984 FFAR3O14843 346 aa6.29□□□□□ -1.4
VPS35-205ENST00000563984 PRODHO43272 600 aa6.29□□□□□ -1.4
VPS35-205ENST00000563984 RAB11FIP3O75154 756 aa6.29□□□□□ -1.4
VPS35-205ENST00000563984 PEX14O75381 377 aa6.29□□□□□ -1.4
VPS35-205ENST00000563984 EIF3JO75822 258 aaKnown RBP6.29□□□□□ -1.4
VPS35-205ENST00000563984 DGKIO75912 1065 aa6.29□□□□□ -1.4
VPS35-205ENST00000563984 PLA2G1BP04054 148 aaKnown RBP6.29□□□□□ -1.4
VPS35-205ENST00000563984 PABPC1P11940 636 aaKnown RBP6.29□□□□□ -1.4
VPS35-205ENST00000563984 HHIPL2Q6UWX4 724 aa6.29□□□□□ -1.4
VPS35-205ENST00000563984 NSMFQ6X4W1 530 aa6.29□□□□□ -1.4
VPS35-205ENST00000563984 ETV3LQ6ZN32 361 aa6.29□□□□□ -1.4
VPS35-205ENST00000563984 DPH6Q7L8W6 267 aa6.29□□□□□ -1.4
VPS35-205ENST00000563984 MILR1Q7Z6M3 343 aa6.29□□□□□ -1.4
VPS35-205ENST00000563984 SAPCD2Q86UD0 394 aa6.29□□□□□ -1.4
VPS35-205ENST00000563984 SP8Q8IXZ3 490 aa6.29□□□□□ -1.4
VPS35-205ENST00000563984 SMARCC2Q8TAQ2 1214 aa6.29□□□□□ -1.4
VPS35-205ENST00000563984 OSBP2Q969R2 916 aa6.29□□□□□ -1.4
VPS35-205ENST00000563984 ZFYVE21Q9BQ24 234 aa6.29□□□□□ -1.4
VPS35-205ENST00000563984 SPATA9Q9BWV2 254 aa6.29□□□□□ -1.4
VPS35-205ENST00000563984 EPB41L1Q9H4G0 881 aa6.29□□□□□ -1.4
VPS35-205ENST00000563984 CLDND1Q9NY35 253 aa6.29□□□□□ -1.4
VPS35-205ENST00000563984 FBXL7Q9UJT9 491 aa6.29□□□□□ -1.4
VPS35-205ENST00000563984 PALD1Q9ULE6 856 aa6.29□□□□□ -1.4
VPS35-205ENST00000563984 GOLGA6CA6NDK9 693 aa6.28□□□□□ -1.4
VPS35-205ENST00000563984 GOLGA6BA6NDN3 693 aa6.28□□□□□ -1.4
VPS35-205ENST00000563984 HGSO14964 777 aaPredicted RBP6.28□□□□□ -1.4
VPS35-205ENST00000563984 GOLGA6DP0CG33 693 aa6.28□□□□□ -1.4
VPS35-205ENST00000563984 SF3A1Q15459 793 aaKnown RBP6.28□□□□□ -1.4
VPS35-205ENST00000563984 EMC4Q5J8M3 183 aa6.28□□□□□ -1.4
VPS35-205ENST00000563984 SOGA3Q5TF21 947 aa6.28□□□□□ -1.4
VPS35-205ENST00000563984 USP53Q70EK8 1073 aa6.28□□□□□ -1.4
VPS35-205ENST00000563984 LRP10Q7Z4F1 713 aa6.28□□□□□ -1.4
VPS35-205ENST00000563984 SNRNP27Q8WVK2 155 aaKnown RBP6.28□□□□□ -1.4
VPS35-205ENST00000563984 GPR20Q99678 358 aa6.28□□□□□ -1.4
VPS35-205ENST00000563984 BDH2Q9BUT1 245 aa6.28□□□□□ -1.4
VPS35-205ENST00000563984 YY1AP1Q9H869 796 aa6.28□□□□□ -1.4
VPS35-205ENST00000563984 NGRNQ9NPE2 291 aaKnown RBP6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms