RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 RGPD5Q99666 1765 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 A0A1W2PRG0 241 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 LAD1O00515 517 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 UPP2O95045 317 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 DDIT3P35638 169 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 PRELPP51888 382 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 PPP2R5AQ15172 486 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 KIAA1841Q6NSI8 718 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 PADI6Q6TGC4 694 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 GOLGA6L1Q8N7Z2 621 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 SCFD2Q8WU76 684 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 CEP83Q9Y592 693 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 GTPBP6O43824 516 aaPredicted RBP10.19□□□□□ -0.78
VPS39-205ENST00000562258 CCDC172P0C7W6 258 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 SETQ01105 290 aaPredicted RBP10.19□□□□□ -0.78
VPS39-205ENST00000562258 TXLNBQ8N3L3 684 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 AK8Q96MA6 479 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 NACA2Q9H009 215 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 HPS5Q9UPZ3 1129 aa10.19□□□□□ -0.78
VPS39-205ENST00000562258 SRPRBQ9Y5M8 271 aaKnown RBP10.19□□□□□ -0.78
VPS39-205ENST00000562258 LPXNO60711 386 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 ICAM1P05362 532 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 XRCC5P13010 732 aaKnown RBP10.18□□□□□ -0.78
VPS39-205ENST00000562258 FDPSP14324 419 aaKnown RBP10.18□□□□□ -0.78
VPS39-205ENST00000562258 PPM1KQ8N3J5 372 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 C16orf45Q96MC5 204 aaPredicted RBP10.18□□□□□ -0.78
VPS39-205ENST00000562258 FAM20AQ96MK3 541 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 PURBQ96QR8 312 aaKnown RBP10.18□□□□□ -0.78
VPS39-205ENST00000562258 PARVGQ9HBI0 331 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 STXBP3O00186 592 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 URI1O94763 535 aaPredicted RBP10.18□□□□□ -0.78
VPS39-205ENST00000562258 NR2F2P24468 414 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 COPB2P35606 906 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 SEC23AQ15436 765 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 CAPNS2Q96L46 248 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 GLT1D1Q96MS3 346 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 RNF208Q9H0X6 261 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 KCNG1Q9UIX4 513 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 CNTNAP5Q8WYK1 1306 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 RDXP35241 583 aaKnown RBP10.18□□□□□ -0.78
VPS39-205ENST00000562258 NPEPPSP55786 919 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 FKBP1AP62942 108 aaKnown RBP10.18□□□□□ -0.78
VPS39-205ENST00000562258 CHST13Q8NET6 341 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 PSPC1Q8WXF1 523 aaKnown RBP10.18□□□□□ -0.78
VPS39-205ENST00000562258 SEPT1Q8WYJ6 367 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 CBX8Q9HC52 389 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 KCNH7Q9NS40 1196 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 NXF1Q9UBU9 619 aaKnown RBP10.18□□□□□ -0.78
VPS39-205ENST00000562258 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.18□□□□□ -0.78
VPS39-205ENST00000562258 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.18□□□□□ -0.78
VPS39-205ENST00000562258 KBTBD13C9JR72 458 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 SLC16A4O15374 487 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 CCP110O43303 1012 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 STX10O60499 249 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 P4HBP07237 508 aaKnown RBP10.18□□□□□ -0.78
VPS39-205ENST00000562258 PPM1FP49593 454 aaPredicted RBP10.18□□□□□ -0.78
VPS39-205ENST00000562258 TNFAIP2Q03169 654 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 USP49Q70CQ1 688 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 DDX12PQ92771 950 aa10.18□□□□□ -0.78
VPS39-205ENST00000562258 PDS5AQ29RF7 1337 aaKnown RBP10.17□□□□□ -0.78
VPS39-205ENST00000562258 VWA5AO00534 786 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 PPP6R2O75170 966 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 SLFN14P0C7P3 912 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 RGS2P41220 211 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 MMP14P50281 582 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 RCAN1P53805 252 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 NLRP12P59046 1061 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 PRAMEF19Q5SWL8 479 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 LRRC71Q8N4P6 559 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 IGSF22Q8N9C0 903 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 TMEM143Q96AN5 459 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 RGPD2P0DJD1 1756 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 STK36Q9NRP7 1315 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 FZD9O00144 591 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 KIF5CO60282 957 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 CTDNEP1O95476 244 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 SKILP12757 684 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 PTPREP23469 700 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 JAK3P52333 1124 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 SLC8A3P57103 927 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 COL9A3Q14050 684 aaPredicted RBP10.17□□□□□ -0.78
VPS39-205ENST00000562258 SLC9C1Q4G0N8 1177 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 PLA2G4FQ68DD2 849 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 CYP2W1Q8TAV3 490 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 EIF2AK1Q9BQI3 630 aaKnown RBP10.17□□□□□ -0.78
VPS39-205ENST00000562258 FANCLQ9NW38 375 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 GDAQ9Y2T3 454 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 ALDH1A1P00352 501 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 GNAT1P11488 350 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 ADORA2AP29274 412 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 DSG3P32926 999 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 USP11P51784 963 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 FANCCQ00597 558 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 CDR2LQ86X02 465 aaPredicted RBP10.17□□□□□ -0.78
VPS39-205ENST00000562258 MRIQ9BWK5 157 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 TMEM60Q9H2L4 133 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 EMILIN3Q9NT22 766 aa10.17□□□□□ -0.78
VPS39-205ENST00000562258 RNF216Q9NWF9 866 aaPredicted RBP10.17□□□□□ -0.78
VPS39-205ENST00000562258 RNF149Q8NC42 400 aa10.16□□□□□ -0.78
VPS39-205ENST00000562258 GIMAP8Q8ND71 665 aaPredicted RBP10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms