RNA–Protein interactions for RNA: ENST00000558400.1

TPM1-213, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-213ENST00000558400 HOXD8P13378 290 aaPredicted RBP9.68□□□□□ -0.86
TPM1-213ENST00000558400 UBA1P22314 1058 aaKnown RBP9.68□□□□□ -0.86
TPM1-213ENST00000558400 SREBF1P36956 1147 aa9.68□□□□□ -0.86
TPM1-213ENST00000558400 PLA2G5P39877 138 aa9.68□□□□□ -0.86
TPM1-213ENST00000558400 CLK2P49760 499 aaKnown RBP9.68□□□□□ -0.86
TPM1-213ENST00000558400 USP11P51784 963 aa9.68□□□□□ -0.86
TPM1-213ENST00000558400 AK2P54819 239 aa9.68□□□□□ -0.86
TPM1-213ENST00000558400 SP2Q02086 613 aa9.68□□□□□ -0.86
TPM1-213ENST00000558400 MTMR1Q13613 665 aa9.68□□□□□ -0.86
TPM1-213ENST00000558400 NBPF20Q3BBV1 942 aa9.68□□□□□ -0.86
TPM1-213ENST00000558400 CEP55Q53EZ4 464 aa9.68□□□□□ -0.86
TPM1-213ENST00000558400 NIPA1Q7RTP0 329 aa9.68□□□□□ -0.86
TPM1-213ENST00000558400 FAM126BQ8IXS8 530 aa9.68□□□□□ -0.86
TPM1-213ENST00000558400 REXO1Q8N1G1 1221 aaKnown RBP9.68□□□□□ -0.86
TPM1-213ENST00000558400 MXRA8Q9BRK3 442 aa9.68□□□□□ -0.86
TPM1-213ENST00000558400 LARP6Q9BRS8 491 aaKnown RBP9.68□□□□□ -0.86
TPM1-213ENST00000558400 ANO3Q9BYT9 981 aa9.68□□□□□ -0.86
TPM1-213ENST00000558400 TPCN1Q9ULQ1 816 aa9.68□□□□□ -0.86
TPM1-213ENST00000558400 GRIN2DO15399 1336 aa9.67□□□□□ -0.86
TPM1-213ENST00000558400 TRIM43BA6NCK2 446 aa9.67□□□□□ -0.86
TPM1-213ENST00000558400 MEIS1O00470 390 aa9.67□□□□□ -0.86
TPM1-213ENST00000558400 ITGB5P18084 799 aa9.67□□□□□ -0.86
TPM1-213ENST00000558400 PTGS1P23219 599 aa9.67□□□□□ -0.86
TPM1-213ENST00000558400 RBM25P49756 843 aaKnown RBP9.67□□□□□ -0.86
TPM1-213ENST00000558400 PSMC6P62333 389 aa9.67□□□□□ -0.86
TPM1-213ENST00000558400 MDM2Q00987 491 aaPredicted RBP9.67□□□□□ -0.86
TPM1-213ENST00000558400 SCRN1Q12765 414 aa9.67□□□□□ -0.86
TPM1-213ENST00000558400 HSDL1Q3SXM5 330 aa9.67□□□□□ -0.86
TPM1-213ENST00000558400 FAM47CQ5HY64 1035 aa9.67□□□□□ -0.86
TPM1-213ENST00000558400 JAKMIP3Q5VZ66 844 aa9.67□□□□□ -0.86
TPM1-213ENST00000558400 CYFIP1Q7L576 1253 aa9.67□□□□□ -0.86
TPM1-213ENST00000558400 SESTD1Q86VW0 696 aa9.67□□□□□ -0.86
TPM1-213ENST00000558400 TMEM199Q8N511 208 aa9.67□□□□□ -0.86
TPM1-213ENST00000558400 C7orf31Q8N865 590 aa9.67□□□□□ -0.86
TPM1-213ENST00000558400 SEPT1Q8WYJ6 367 aa9.67□□□□□ -0.86
TPM1-213ENST00000558400 BADQ92934 168 aa9.67□□□□□ -0.86
TPM1-213ENST00000558400 TNPO1Q92973 898 aaKnown RBP9.67□□□□□ -0.86
TPM1-213ENST00000558400 TRIM43Q96BQ3 446 aaPredicted RBP9.67□□□□□ -0.86
TPM1-213ENST00000558400 ZFP91Q96JP5 570 aaPredicted RBP9.67□□□□□ -0.86
TPM1-213ENST00000558400 ZSCAN31Q96LW9 406 aaPredicted RBP9.67□□□□□ -0.86
TPM1-213ENST00000558400 KCNH7Q9NS40 1196 aa9.67□□□□□ -0.86
TPM1-213ENST00000558400 TBX21Q9UL17 535 aa9.67□□□□□ -0.86
TPM1-213ENST00000558400 LIMCH1Q9UPQ0 1083 aa9.67□□□□□ -0.86
TPM1-213ENST00000558400 EYSQ5T1H1 3165 aa9.67□□□□□ -0.86
TPM1-213ENST00000558400 STK36Q9NRP7 1315 aa9.66□□□□□ -0.86
TPM1-213ENST00000558400 H3BRB1 525 aa9.66□□□□□ -0.86
TPM1-213ENST00000558400 PSEN2P49810 448 aa9.66□□□□□ -0.86
TPM1-213ENST00000558400 ARHGAP4P98171 946 aa9.66□□□□□ -0.86
TPM1-213ENST00000558400 ME3Q16798 604 aa9.66□□□□□ -0.86
TPM1-213ENST00000558400 FAM109BQ6ICB4 259 aaPredicted RBP9.66□□□□□ -0.86
TPM1-213ENST00000558400 MFSD5Q6N075 450 aa9.66□□□□□ -0.86
TPM1-213ENST00000558400 SH3RF1Q7Z6J0 888 aa9.66□□□□□ -0.86
TPM1-213ENST00000558400 RPUSD2Q8IZ73 545 aaKnown RBP9.66□□□□□ -0.86
TPM1-213ENST00000558400 RETREG2Q8NC44 543 aa9.66□□□□□ -0.86
TPM1-213ENST00000558400 KAT2BQ92831 832 aa9.66□□□□□ -0.86
TPM1-213ENST00000558400 SDF4Q9BRK5 362 aa9.66□□□□□ -0.86
TPM1-213ENST00000558400 TUT1Q9H6E5 874 aaKnown RBP9.66□□□□□ -0.86
TPM1-213ENST00000558400 VPS54Q9P1Q0 977 aa9.66□□□□□ -0.86
TPM1-213ENST00000558400 ORC3Q9UBD5 711 aaPredicted RBP9.66□□□□□ -0.86
TPM1-213ENST00000558400 ZNF215Q9UL58 517 aaPredicted RBP9.66□□□□□ -0.86
TPM1-213ENST00000558400 PCDHA4Q9UN74 947 aa9.66□□□□□ -0.86
TPM1-213ENST00000558400 NOD1Q9Y239 953 aa9.66□□□□□ -0.86
TPM1-213ENST00000558400 LCTP09848 1927 aa9.66□□□□□ -0.86
TPM1-213ENST00000558400 FRMPD3Q5JV73 1810 aa9.66□□□□□ -0.86
TPM1-213ENST00000558400 NFASCO94856 1347 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 HAS3O00219 553 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 B4GALT4O60513 344 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 ATP9AO75110 1047 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 PPFIA3O75145 1194 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 PARNO95453 639 aaKnown RBP9.65□□□□□ -0.86
TPM1-213ENST00000558400 F2P00734 622 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 GNAT1P11488 350 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 KCNA2P16389 499 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 CIITAP33076 1130 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 SETQ01105 290 aaPredicted RBP9.65□□□□□ -0.86
TPM1-213ENST00000558400 FPGSQ05932 587 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 SEMA3FQ13275 785 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 PPIGQ13427 754 aaKnown RBP eCLIP9.65□□□□□ -0.861e-17■□□□□ 11.3
TPM1-213ENST00000558400 BFSP2Q13515 415 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 MFSD10Q14728 455 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 RABEP1Q15276 862 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 PTGISQ16647 500 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 KIAA0753Q2KHM9 967 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 PLA2G4DQ86XP0 818 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 BLIDQ8IZY5 108 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 CCDC155Q8N6L0 562 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 DAGLBQ8NCG7 672 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 CRYGNQ8WXF5 182 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 GTF3C6Q969F1 213 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 GPR20Q99678 358 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 LLPHQ9BRT6 129 aaKnown RBP9.65□□□□□ -0.86
TPM1-213ENST00000558400 C16orf70Q9BSU1 422 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 TRPV6Q9H1D0 765 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 HIPK3Q9H422 1215 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 SH2B1Q9NRF2 756 aaPredicted RBP9.65□□□□□ -0.86
TPM1-213ENST00000558400 TBC1D22BQ9NU19 505 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 TMEM260Q9NX78 707 aa9.65□□□□□ -0.86
TPM1-213ENST00000558400 MUC3AQ02505 3323 aa9.64□□□□□ -0.87
TPM1-213ENST00000558400 PRUNE2Q8WUY3 3088 aa9.64□□□□□ -0.87
TPM1-213ENST00000558400 ST18O60284 1047 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms