RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 TADA3O75528 432 aa4.54□□□□□ -1.68
VPS13C-205ENST00000558088 DDAH1O94760 285 aa4.54□□□□□ -1.68
VPS13C-205ENST00000558088 FBXO21O94952 628 aa4.54□□□□□ -1.68
VPS13C-205ENST00000558088 SSBP05455 408 aaKnown RBP eCLIP4.54□□□□□ -1.68
VPS13C-205ENST00000558088 TESK1Q15569 626 aa4.54□□□□□ -1.68
VPS13C-205ENST00000558088 ZNF568Q3ZCX4 644 aa4.54□□□□□ -1.68
VPS13C-205ENST00000558088 CYP4F22Q6NT55 531 aa4.54□□□□□ -1.68
VPS13C-205ENST00000558088 RALYLQ86SE5 291 aaKnown RBP4.54□□□□□ -1.68
VPS13C-205ENST00000558088 VPS37DQ86XT2 251 aa4.54□□□□□ -1.68
VPS13C-205ENST00000558088 ZFPM1Q8IX07 1006 aa4.54□□□□□ -1.68
VPS13C-205ENST00000558088 IFNL2Q8IZJ0 200 aa4.54□□□□□ -1.68
VPS13C-205ENST00000558088 DNERQ8NFT8 737 aa4.54□□□□□ -1.68
VPS13C-205ENST00000558088 ZCCHC14Q8WYQ9 949 aaKnown RBP4.54□□□□□ -1.68
VPS13C-205ENST00000558088 TGIF2Q9GZN2 237 aa4.54□□□□□ -1.68
VPS13C-205ENST00000558088 CAPN10Q9HC96 672 aa4.54□□□□□ -1.68
VPS13C-205ENST00000558088 CD248Q9HCU0 757 aa4.54□□□□□ -1.68
VPS13C-205ENST00000558088 SMAD7O15105 426 aaKnown RBP4.53□□□□□ -1.68
VPS13C-205ENST00000558088 TBX1O43435 398 aa4.53□□□□□ -1.68
VPS13C-205ENST00000558088 ZNF623O75123 536 aa4.53□□□□□ -1.68
VPS13C-205ENST00000558088 LRG1P02750 347 aa4.53□□□□□ -1.68
VPS13C-205ENST00000558088 CHGBP05060 677 aa4.53□□□□□ -1.68
VPS13C-205ENST00000558088 GFRA1P56159 465 aa4.53□□□□□ -1.68
VPS13C-205ENST00000558088 CYP4F3Q08477 520 aa4.53□□□□□ -1.68
VPS13C-205ENST00000558088 CDSNQ15517 529 aa4.53□□□□□ -1.68
VPS13C-205ENST00000558088 FXNQ16595 210 aa4.53□□□□□ -1.68
VPS13C-205ENST00000558088 PRSS53Q2L4Q9 553 aa4.53□□□□□ -1.68
VPS13C-205ENST00000558088 ZNF747Q9BV97 191 aa4.53□□□□□ -1.68
VPS13C-205ENST00000558088 FBXL7Q9UJT9 491 aa4.53□□□□□ -1.68
VPS13C-205ENST00000558088 PATE3B3GLJ2 98 aa4.52□□□□□ -1.69
VPS13C-205ENST00000558088 AMHP03971 560 aa4.52□□□□□ -1.69
VPS13C-205ENST00000558088 ACVRL1P37023 503 aa4.52□□□□□ -1.69
VPS13C-205ENST00000558088 EEPD1Q7L9B9 569 aa4.52□□□□□ -1.69
VPS13C-205ENST00000558088 TMEM145Q8NBT3 493 aa4.52□□□□□ -1.69
VPS13C-205ENST00000558088 KREMEN2Q8NCW0 462 aa4.52□□□□□ -1.69
VPS13C-205ENST00000558088 TTLL11Q8NHH1 800 aa4.52□□□□□ -1.69
VPS13C-205ENST00000558088 KCTD13Q8WZ19 329 aa4.52□□□□□ -1.69
VPS13C-205ENST00000558088 ZNF341Q9BYN7 854 aa4.52□□□□□ -1.69
VPS13C-205ENST00000558088 ACBD3Q9H3P7 528 aa4.52□□□□□ -1.69
VPS13C-205ENST00000558088 SEC61A2Q9H9S3 476 aa4.52□□□□□ -1.69
VPS13C-205ENST00000558088 DLL4Q9NR61 685 aa4.52□□□□□ -1.69
VPS13C-205ENST00000558088 HSPBP1Q9NZL4 362 aa4.52□□□□□ -1.69
VPS13C-205ENST00000558088 ASH2LQ9UBL3 628 aa4.52□□□□□ -1.69
VPS13C-205ENST00000558088 ADAM29Q9UKF5 820 aa4.52□□□□□ -1.69
VPS13C-205ENST00000558088 SLPIP03973 132 aa4.51□□□□□ -1.69
VPS13C-205ENST00000558088 LCP1P13796 627 aa4.51□□□□□ -1.69
VPS13C-205ENST00000558088 SMAD2Q15796 467 aaKnown RBP4.51□□□□□ -1.69
VPS13C-205ENST00000558088 Q8N1X5 172 aa4.51□□□□□ -1.69
VPS13C-205ENST00000558088 GIMAP8Q8ND71 665 aaPredicted RBP4.51□□□□□ -1.69
VPS13C-205ENST00000558088 MRRFQ96E11 262 aaKnown RBP4.51□□□□□ -1.69
VPS13C-205ENST00000558088 LMF1Q96S06 567 aa4.51□□□□□ -1.69
VPS13C-205ENST00000558088 EPN3Q9H201 632 aa4.51□□□□□ -1.69
VPS13C-205ENST00000558088 SLITRK6Q9H5Y7 841 aa4.51□□□□□ -1.69
VPS13C-205ENST00000558088 SLC6A20Q9NP91 592 aa4.51□□□□□ -1.69
VPS13C-205ENST00000558088 TESMINQ9Y4I5 508 aa4.51□□□□□ -1.69
VPS13C-205ENST00000558088 MRVI1Q9Y6F6 885 aa4.51□□□□□ -1.69
VPS13C-205ENST00000558088 B2RBV5 119 aa4.5□□□□□ -1.69
VPS13C-205ENST00000558088 ARNTLO00327 626 aa4.5□□□□□ -1.69
VPS13C-205ENST00000558088 ATF4P18848 351 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-205ENST00000558088 SPIRE1Q08AE8 756 aa4.5□□□□□ -1.69
VPS13C-205ENST00000558088 MAP4K2Q12851 820 aa4.5□□□□□ -1.69
VPS13C-205ENST00000558088 GNL2Q13823 731 aaKnown RBP4.5□□□□□ -1.69
VPS13C-205ENST00000558088 SF1Q15637 639 aaKnown RBP4.5□□□□□ -1.69
VPS13C-205ENST00000558088 SPDYAQ5MJ70 313 aa4.5□□□□□ -1.69
VPS13C-205ENST00000558088 Q6ZUG5 572 aa4.5□□□□□ -1.69
VPS13C-205ENST00000558088 DTX3Q8N9I9 347 aa4.5□□□□□ -1.69
VPS13C-205ENST00000558088 PIP4K2CQ8TBX8 421 aa4.5□□□□□ -1.69
VPS13C-205ENST00000558088 MENTQ9BUN1 341 aa4.5□□□□□ -1.69
VPS13C-205ENST00000558088 MEGF9Q9H1U4 602 aa4.5□□□□□ -1.69
VPS13C-205ENST00000558088 GPR27Q9NS67 375 aa4.5□□□□□ -1.69
VPS13C-205ENST00000558088 PRKAG3Q9UGI9 489 aa4.5□□□□□ -1.69
VPS13C-205ENST00000558088 R3HCC1Q9Y3T6 440 aaKnown RBP4.5□□□□□ -1.69
VPS13C-205ENST00000558088 HS3ST3A1Q9Y663 406 aa4.5□□□□□ -1.69
VPS13C-205ENST00000558088 OVOL3O00110 214 aa4.49□□□□□ -1.69
VPS13C-205ENST00000558088 SLC27A2O14975 620 aa4.49□□□□□ -1.69
VPS13C-205ENST00000558088 GRIN1Q05586 938 aa4.49□□□□□ -1.69
VPS13C-205ENST00000558088 PRKD1Q15139 912 aaPredicted RBP4.49□□□□□ -1.69
VPS13C-205ENST00000558088 SKIDA1Q1XH10 827 aa4.49□□□□□ -1.69
VPS13C-205ENST00000558088 SLC35F1Q5T1Q4 408 aa4.49□□□□□ -1.69
VPS13C-205ENST00000558088 REXO1L1PQ8IX06 675 aa4.49□□□□□ -1.69
VPS13C-205ENST00000558088 NUDT10Q8NFP7 164 aa4.49□□□□□ -1.69
VPS13C-205ENST00000558088 Q8TCH9 128 aa4.49□□□□□ -1.69
VPS13C-205ENST00000558088 NUDT11Q96G61 164 aa4.49□□□□□ -1.69
VPS13C-205ENST00000558088 LRRC37BQ96QE4 947 aa4.49□□□□□ -1.69
VPS13C-205ENST00000558088 PTPN18Q99952 460 aa4.49□□□□□ -1.69
VPS13C-205ENST00000558088 JAM3Q9BX67 310 aa4.49□□□□□ -1.69
VPS13C-205ENST00000558088 ARHGAP20Q9P2F6 1191 aa4.49□□□□□ -1.69
VPS13C-205ENST00000558088 ZFP69BQ9UJL9 534 aa4.49□□□□□ -1.69
VPS13C-205ENST00000558088 NPFFR2Q9Y5X5 522 aa4.49□□□□□ -1.69
VPS13C-205ENST00000558088 KLHL18O94889 574 aa4.48□□□□□ -1.69
VPS13C-205ENST00000558088 CKMP06732 381 aa4.48□□□□□ -1.69
VPS13C-205ENST00000558088 ENO2P09104 434 aaPredicted RBP4.48□□□□□ -1.69
VPS13C-205ENST00000558088 GNAT1P11488 350 aa4.48□□□□□ -1.69
VPS13C-205ENST00000558088 GLRBP48167 497 aa4.48□□□□□ -1.69
VPS13C-205ENST00000558088 TUSC3Q13454 348 aa4.48□□□□□ -1.69
VPS13C-205ENST00000558088 R3HDM1Q15032 1099 aaKnown RBP4.48□□□□□ -1.69
VPS13C-205ENST00000558088 DENND5AQ6IQ26 1287 aa4.48□□□□□ -1.69
VPS13C-205ENST00000558088 RSPO2Q6UXX9 243 aaPredicted RBP4.48□□□□□ -1.69
VPS13C-205ENST00000558088 USP53Q70EK8 1073 aa4.48□□□□□ -1.69
VPS13C-205ENST00000558088 C1orf159Q96HA4 380 aa4.48□□□□□ -1.69
VPS13C-205ENST00000558088 IER2Q9BTL4 223 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms