RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 PURAQ00577 322 aaKnown RBP13.01□□□□□ -0.33
CCDC88C-212ENST00000556767 SETQ01105 290 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-212ENST00000556767 LETM2Q2VYF4 491 aa13.01□□□□□ -0.33
CCDC88C-212ENST00000556767 HSDL1Q3SXM5 330 aa13.01□□□□□ -0.33
CCDC88C-212ENST00000556767 TRIM60Q495X7 471 aa13.01□□□□□ -0.33
CCDC88C-212ENST00000556767 NIPA1Q7RTP0 329 aa13.01□□□□□ -0.33
CCDC88C-212ENST00000556767 NEK8Q86SG6 692 aa13.01□□□□□ -0.33
CCDC88C-212ENST00000556767 C7orf61Q8IZ16 206 aa13.01□□□□□ -0.33
CCDC88C-212ENST00000556767 FBXO18Q8NFZ0 1043 aa13.01□□□□□ -0.33
CCDC88C-212ENST00000556767 PPTC7Q8NI37 304 aa13.01□□□□□ -0.33
CCDC88C-212ENST00000556767 CRYGNQ8WXF5 182 aa13.01□□□□□ -0.33
CCDC88C-212ENST00000556767 EMID1Q96A84 441 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-212ENST00000556767 ZNF577Q9BSK1 485 aa13.01□□□□□ -0.33
CCDC88C-212ENST00000556767 AGO4Q9HCK5 861 aaKnown RBP13.01□□□□□ -0.33
CCDC88C-212ENST00000556767 FOXD4L1Q9NU39 408 aa13.01□□□□□ -0.33
CCDC88C-212ENST00000556767 ELP1O95163 1332 aa13.01□□□□□ -0.33
CCDC88C-212ENST00000556767 DOCK5Q9H7D0 1870 aa13□□□□□ -0.33
CCDC88C-212ENST00000556767 IGLV3-22A0A075B6J6 115 aa13□□□□□ -0.33
CCDC88C-212ENST00000556767 A0A0U1RQG5 324 aaPredicted RBP13□□□□□ -0.33
CCDC88C-212ENST00000556767 FAM205CA6NFA0 338 aa13□□□□□ -0.33
CCDC88C-212ENST00000556767 H3BQV1 296 aa13□□□□□ -0.33
CCDC88C-212ENST00000556767 PQBP1O60828 265 aaKnown RBP13□□□□□ -0.33
CCDC88C-212ENST00000556767 PPFIA4O75335 1185 aa13□□□□□ -0.33
CCDC88C-212ENST00000556767 TDP2O95551 362 aa13□□□□□ -0.33
CCDC88C-212ENST00000556767 ZNF286BP0CG31 522 aa13□□□□□ -0.33
CCDC88C-212ENST00000556767 ATP2B1P20020 1258 aa13□□□□□ -0.33
CCDC88C-212ENST00000556767 CIITAP33076 1130 aa13□□□□□ -0.33
CCDC88C-212ENST00000556767 ITGA7Q13683 1181 aa13□□□□□ -0.33
CCDC88C-212ENST00000556767 FAM47CQ5HY64 1035 aa13□□□□□ -0.33
CCDC88C-212ENST00000556767 EARS2Q5JPH6 523 aaKnown RBP13□□□□□ -0.33
CCDC88C-212ENST00000556767 UTP14CQ5TAP6 766 aaKnown RBP13□□□□□ -0.33
CCDC88C-212ENST00000556767 SNX21Q969T3 373 aa13□□□□□ -0.33
CCDC88C-212ENST00000556767 JPH1Q9HDC5 661 aaPredicted RBP13□□□□□ -0.33
CCDC88C-212ENST00000556767 TCEAL9Q9UHQ7 104 aa13□□□□□ -0.33
CCDC88C-212ENST00000556767 NR2E3Q9Y5X4 410 aa13□□□□□ -0.33
CCDC88C-212ENST00000556767 ARVCFO00192 962 aa12.99□□□□□ -0.33
CCDC88C-212ENST00000556767 IPO5O00410 1097 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-212ENST00000556767 MARCH6O60337 910 aa12.99□□□□□ -0.33
CCDC88C-212ENST00000556767 CCNT1O60563 726 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-212ENST00000556767 HSP90AA1P07900 732 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-212ENST00000556767 ITGB3BPQ13352 177 aaPredicted RBP12.99□□□□□ -0.33
CCDC88C-212ENST00000556767 CUL4AQ13619 759 aa12.99□□□□□ -0.33
CCDC88C-212ENST00000556767 LARP1BQ659C4 914 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-212ENST00000556767 MCTP1Q6DN14 999 aa12.99□□□□□ -0.33
CCDC88C-212ENST00000556767 PPP1R13LQ8WUF5 828 aa12.99□□□□□ -0.33
CCDC88C-212ENST00000556767 GPR20Q99678 358 aa12.99□□□□□ -0.33
CCDC88C-212ENST00000556767 SLC9A2Q9UBY0 812 aa12.99□□□□□ -0.33
CCDC88C-212ENST00000556767 DDX25Q9UHL0 483 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-212ENST00000556767 NFASCO94856 1347 aa12.98□□□□□ -0.33
CCDC88C-212ENST00000556767 DCDC2CA8MYV0 355 aa12.98□□□□□ -0.33
CCDC88C-212ENST00000556767 EDIL3O43854 480 aa12.98□□□□□ -0.33
CCDC88C-212ENST00000556767 TLE2Q04725 743 aa12.98□□□□□ -0.33
CCDC88C-212ENST00000556767 SEPT1Q8WYJ6 367 aa12.98□□□□□ -0.33
CCDC88C-212ENST00000556767 TNFRSF25Q93038 417 aa12.98□□□□□ -0.33
CCDC88C-212ENST00000556767 NAP1L4Q99733 375 aaKnown RBP12.98□□□□□ -0.33
CCDC88C-212ENST00000556767 KATNAL1Q9BW62 490 aa12.98□□□□□ -0.33
CCDC88C-212ENST00000556767 FOXP1Q9H334 677 aaPredicted RBP12.98□□□□□ -0.33
CCDC88C-212ENST00000556767 PRDM5Q9NQX1 630 aaPredicted RBP12.98□□□□□ -0.33
CCDC88C-212ENST00000556767 TBC1D22BQ9NU19 505 aa12.98□□□□□ -0.33
CCDC88C-212ENST00000556767 PRKAG2Q9UGJ0 569 aa12.98□□□□□ -0.33
CCDC88C-212ENST00000556767 ZMYND8Q9ULU4 1186 aaPredicted RBP12.98□□□□□ -0.33
CCDC88C-212ENST00000556767 TELO2Q9Y4R8 837 aa12.98□□□□□ -0.33
CCDC88C-212ENST00000556767 CENPFP49454 3210 aa12.98□□□□□ -0.33
CCDC88C-212ENST00000556767 MROH7Q68CQ1 1323 aa12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 CYP3A7-CYP3A51PA0A087WV96 503 aa12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 TLR3O15455 904 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 MSH4O15457 936 aa12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 LGALS2P05162 132 aa12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 GCFC2P16383 781 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 CYP3A7P24462 503 aa12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 TCF7P36402 384 aaPredicted RBP12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 PSEN2P49810 448 aa12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 ACTR2P61160 394 aa12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 MFSD10Q14728 455 aa12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 SNX17Q15036 470 aa12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 KIAA0753Q2KHM9 967 aa12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 NBPF20Q3BBV1 942 aa12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 Q4G0T1 1027 aa12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 MOXD1Q6UVY6 613 aa12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 GLG1Q92896 1179 aa12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 GJA10Q969M2 543 aa12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 LENG9Q96B70 501 aa12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 TEKT3Q9BXF9 490 aa12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 SAMM50Q9Y512 469 aa12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 ALPK3Q96L96 1907 aa12.97□□□□□ -0.33
CCDC88C-212ENST00000556767 GRIN2DO15399 1336 aa12.96□□□□□ -0.33
CCDC88C-212ENST00000556767 GSTTP1A0A1W2PQM5 241 aa12.96□□□□□ -0.33
CCDC88C-212ENST00000556767 KIF28PB7ZC32 967 aa12.96□□□□□ -0.33
CCDC88C-212ENST00000556767 CHMP2AO43633 222 aa12.96□□□□□ -0.33
CCDC88C-212ENST00000556767 SLC37A4O43826 429 aa12.96□□□□□ -0.33
CCDC88C-212ENST00000556767 GAS7O60861 476 aa12.96□□□□□ -0.33
CCDC88C-212ENST00000556767 HOXD8P13378 290 aaPredicted RBP12.96□□□□□ -0.33
CCDC88C-212ENST00000556767 SYN1P17600 705 aa12.96□□□□□ -0.33
CCDC88C-212ENST00000556767 C1orf53Q5VUE5 145 aa12.96□□□□□ -0.33
CCDC88C-212ENST00000556767 LRCH2Q5VUJ6 765 aa12.96□□□□□ -0.33
CCDC88C-212ENST00000556767 PPP4R3AQ6IN85 833 aa12.96□□□□□ -0.33
CCDC88C-212ENST00000556767 TRIM50Q86XT4 487 aa12.96□□□□□ -0.33
CCDC88C-212ENST00000556767 NOSTRINQ8IVI9 506 aa12.96□□□□□ -0.33
CCDC88C-212ENST00000556767 C7orf31Q8N865 590 aa12.96□□□□□ -0.33
CCDC88C-212ENST00000556767 KAT2BQ92831 832 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms