RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 FAM124AQ86V42 546 aa7.91□□□□□ -1.14
PRPF39-209ENST00000556353 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.91□□□□□ -1.14
PRPF39-209ENST00000556353 CLIC6Q96NY7 704 aa7.91□□□□□ -1.14
PRPF39-209ENST00000556353 TMEM209Q96SK2 561 aa7.91□□□□□ -1.14
PRPF39-209ENST00000556353 KCNJ15Q99712 375 aa7.91□□□□□ -1.14
PRPF39-209ENST00000556353 CCDC85CA6NKD9 419 aa7.9□□□□□ -1.14
PRPF39-209ENST00000556353 SLC27A2O14975 620 aa7.9□□□□□ -1.14
PRPF39-209ENST00000556353 CYP7B1O75881 506 aa7.9□□□□□ -1.14
PRPF39-209ENST00000556353 GNAT1P11488 350 aa7.9□□□□□ -1.14
PRPF39-209ENST00000556353 PRAMEF18Q5VWM3 479 aa7.9□□□□□ -1.14
PRPF39-209ENST00000556353 PRRT2Q7Z6L0 340 aaPredicted RBP7.9□□□□□ -1.14
PRPF39-209ENST00000556353 ZSWIM3Q96MP5 696 aa7.9□□□□□ -1.14
PRPF39-209ENST00000556353 C8orf37Q96NL8 207 aa7.9□□□□□ -1.14
PRPF39-209ENST00000556353 WRNIP1Q96S55 665 aa7.9□□□□□ -1.14
PRPF39-209ENST00000556353 CCDC113Q9H0I3 377 aa7.9□□□□□ -1.14
PRPF39-209ENST00000556353 NUB1Q9Y5A7 615 aa7.9□□□□□ -1.14
PRPF39-209ENST00000556353 GTF2F1P35269 517 aaKnown RBP eCLIP7.89□□□□□ -1.15
PRPF39-209ENST00000556353 TTLL11Q8NHH1 800 aa7.89□□□□□ -1.15
PRPF39-209ENST00000556353 IPO9Q96P70 1041 aaKnown RBP7.89□□□□□ -1.15
PRPF39-209ENST00000556353 CDC6Q99741 560 aa7.89□□□□□ -1.15
PRPF39-209ENST00000556353 SIRPGQ9P1W8 387 aa7.89□□□□□ -1.15
PRPF39-209ENST00000556353 PFDN2Q9UHV9 154 aa7.89□□□□□ -1.15
PRPF39-209ENST00000556353 MROH6A6NGR9 719 aa7.88□□□□□ -1.15
PRPF39-209ENST00000556353 SOD2P04179 222 aa7.88□□□□□ -1.15
PRPF39-209ENST00000556353 COL6A2P12110 1019 aa7.88□□□□□ -1.15
PRPF39-209ENST00000556353 ZNF28P17035 718 aa7.88□□□□□ -1.15
PRPF39-209ENST00000556353 SSRP1Q08945 709 aaKnown RBP7.88□□□□□ -1.15
PRPF39-209ENST00000556353 BORAQ6PGQ7 559 aa7.88□□□□□ -1.15
PRPF39-209ENST00000556353 TMC5Q6UXY8 1006 aa7.88□□□□□ -1.15
PRPF39-209ENST00000556353 SCUBE1Q8IWY4 988 aa7.88□□□□□ -1.15
PRPF39-209ENST00000556353 TXNDC5Q8NBS9 432 aaKnown RBP7.88□□□□□ -1.15
PRPF39-209ENST00000556353 ALG1Q9BT22 464 aa7.88□□□□□ -1.15
PRPF39-209ENST00000556353 HIRIP3Q9BW71 556 aaPredicted RBP7.88□□□□□ -1.15
PRPF39-209ENST00000556353 L2HGDHQ9H9P8 463 aa7.88□□□□□ -1.15
PRPF39-209ENST00000556353 HSPBP1Q9NZL4 362 aa7.88□□□□□ -1.15
PRPF39-209ENST00000556353 CNOT11Q9UKZ1 510 aaKnown RBP7.88□□□□□ -1.15
PRPF39-209ENST00000556353 FAM47E-STBD1D6RA91 191 aa7.87□□□□□ -1.15
PRPF39-209ENST00000556353 ADCY3O60266 1144 aa7.87□□□□□ -1.15
PRPF39-209ENST00000556353 CYP1A1P04798 512 aaPredicted RBP7.87□□□□□ -1.15
PRPF39-209ENST00000556353 IL13P35225 146 aa7.87□□□□□ -1.15
PRPF39-209ENST00000556353 GRIN1Q05586 938 aa7.87□□□□□ -1.15
PRPF39-209ENST00000556353 TUSC3Q13454 348 aa7.87□□□□□ -1.15
PRPF39-209ENST00000556353 LGI4Q8N135 537 aa7.87□□□□□ -1.15
PRPF39-209ENST00000556353 UHMK1Q8TAS1 419 aaKnown RBP7.87□□□□□ -1.15
PRPF39-209ENST00000556353 CLEC4DQ8WXI8 215 aa7.87□□□□□ -1.15
PRPF39-209ENST00000556353 LCORQ96JN0 433 aaPredicted RBP7.87□□□□□ -1.15
PRPF39-209ENST00000556353 CROTQ9UKG9 612 aa7.87□□□□□ -1.15
PRPF39-209ENST00000556353 ASXL2Q76L83 1435 aa7.86□□□□□ -1.15
PRPF39-209ENST00000556353 TRBV23-1A0A0A0MS06 115 aa7.86□□□□□ -1.15
PRPF39-209ENST00000556353 C9orf118A6NHY6 69 aa7.86□□□□□ -1.15
PRPF39-209ENST00000556353 K7ESM1 405 aa7.86□□□□□ -1.15
PRPF39-209ENST00000556353 SPATS1Q496A3 300 aa7.86□□□□□ -1.15
PRPF39-209ENST00000556353 RBM12BQ8IXT5 1001 aaKnown RBP7.86□□□□□ -1.15
PRPF39-209ENST00000556353 ZBTB38Q8NAP3 1195 aaPredicted RBP7.86□□□□□ -1.15
PRPF39-209ENST00000556353 ARMC5Q96C12 935 aa7.86□□□□□ -1.15
PRPF39-209ENST00000556353 IPPKQ9H8X2 491 aa7.86□□□□□ -1.15
PRPF39-209ENST00000556353 DSEQ9UL01 958 aa7.86□□□□□ -1.15
PRPF39-209ENST00000556353 TRAF6Q9Y4K3 522 aa7.86□□□□□ -1.15
PRPF39-209ENST00000556353 ABCC9O60706 1549 aa7.86□□□□□ -1.15
PRPF39-209ENST00000556353 AQP7O14520 342 aa7.85□□□□□ -1.15
PRPF39-209ENST00000556353 NKRFO15226 690 aaKnown RBP eCLIP7.85□□□□□ -1.15
PRPF39-209ENST00000556353 MLLT6P55198 1093 aaPredicted RBP7.85□□□□□ -1.15
PRPF39-209ENST00000556353 SUMO1P63165 101 aaKnown RBP7.85□□□□□ -1.15
PRPF39-209ENST00000556353 EFEMP1Q12805 493 aa7.85□□□□□ -1.15
PRPF39-209ENST00000556353 HABP4Q5JVS0 413 aaKnown RBP7.85□□□□□ -1.15
PRPF39-209ENST00000556353 VASNQ6EMK4 673 aa7.85□□□□□ -1.15
PRPF39-209ENST00000556353 MAMDC2Q7Z304 686 aaPredicted RBP7.85□□□□□ -1.15
PRPF39-209ENST00000556353 WASF3Q9UPY6 502 aa7.85□□□□□ -1.15
PRPF39-209ENST00000556353 PAN2Q504Q3 1202 aaKnown RBP7.84□□□□□ -1.15
PRPF39-209ENST00000556353 FAM209AQ5JX71 171 aa7.84□□□□□ -1.15
PRPF39-209ENST00000556353 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.84□□□□□ -1.15
PRPF39-209ENST00000556353 MTDHQ86UE4 582 aaKnown RBP7.84□□□□□ -1.15
PRPF39-209ENST00000556353 PTPRN2Q92932 1015 aa7.84□□□□□ -1.15
PRPF39-209ENST00000556353 KRTAP9-3Q9BYQ3 159 aa7.84□□□□□ -1.15
PRPF39-209ENST00000556353 TMEM168Q9H0V1 697 aa7.84□□□□□ -1.15
PRPF39-209ENST00000556353 RBPJLQ9UBG7 517 aa7.84□□□□□ -1.15
PRPF39-209ENST00000556353 INVSQ9Y283 1065 aa7.84□□□□□ -1.15
PRPF39-209ENST00000556353 DIAPH1O60610 1272 aaKnown RBP7.83□□□□□ -1.16
PRPF39-209ENST00000556353 LTFP02788 710 aa7.83□□□□□ -1.16
PRPF39-209ENST00000556353 ITGB3P05106 788 aa7.83□□□□□ -1.16
PRPF39-209ENST00000556353 ADRB1P08588 477 aa7.83□□□□□ -1.16
PRPF39-209ENST00000556353 FAHP16930 419 aa7.83□□□□□ -1.16
PRPF39-209ENST00000556353 PAK1Q13153 545 aa7.83□□□□□ -1.16
PRPF39-209ENST00000556353 LCE5AQ5TCM9 118 aa7.83□□□□□ -1.16
PRPF39-209ENST00000556353 TRMT10BQ6PF06 316 aaKnown RBP7.83□□□□□ -1.16
PRPF39-209ENST00000556353 KCTD1Q719H9 257 aa7.83□□□□□ -1.16
PRPF39-209ENST00000556353 PROSER1Q86XN7 944 aa7.83□□□□□ -1.16
PRPF39-209ENST00000556353 ZCCHC14Q8WYQ9 949 aaKnown RBP7.83□□□□□ -1.16
PRPF39-209ENST00000556353 YTHDC1Q96MU7 727 aaKnown RBP7.83□□□□□ -1.16
PRPF39-209ENST00000556353 PDGFDQ9GZP0 370 aaPredicted RBP7.83□□□□□ -1.16
PRPF39-209ENST00000556353 DLL4Q9NR61 685 aa7.83□□□□□ -1.16
PRPF39-209ENST00000556353 FTSJ1Q9UET6 329 aa7.83□□□□□ -1.16
PRPF39-209ENST00000556353 PLATP00750 562 aa7.82□□□□□ -1.16
PRPF39-209ENST00000556353 SERINC3Q13530 473 aa7.82□□□□□ -1.16
PRPF39-209ENST00000556353 ZNF827Q17R98 1081 aa7.82□□□□□ -1.16
PRPF39-209ENST00000556353 FOXB2Q5VYV0 432 aa7.82□□□□□ -1.16
PRPF39-209ENST00000556353 DTX3Q8N9I9 347 aa7.82□□□□□ -1.16
PRPF39-209ENST00000556353 TELO2Q9Y4R8 837 aa7.82□□□□□ -1.16
PRPF39-209ENST00000556353 KDM2BQ8NHM5 1336 aa7.81□□□□□ -1.16
PRPF39-209ENST00000556353 CKMP06732 381 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms