RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 ZNF76P36508 570 aa23.55■■□□□ 1.36
CCDC88C-210ENST00000555995 AK2P54819 239 aa23.55■■□□□ 1.36
CCDC88C-210ENST00000555995 ARHGAP4P98171 946 aa23.55■■□□□ 1.36
CCDC88C-210ENST00000555995 BFSP2Q13515 415 aa23.55■■□□□ 1.36
CCDC88C-210ENST00000555995 CEP55Q53EZ4 464 aa23.55■■□□□ 1.36
CCDC88C-210ENST00000555995 NIPA1Q7RTP0 329 aa23.55■■□□□ 1.36
CCDC88C-210ENST00000555995 TRMT13Q9NUP7 481 aaKnown RBP23.55■■□□□ 1.36
CCDC88C-210ENST00000555995 GTF2IRD1Q9UHL9 959 aa23.55■■□□□ 1.36
CCDC88C-210ENST00000555995 LGALS2P05162 132 aa23.54■■□□□ 1.36
CCDC88C-210ENST00000555995 KCNA2P16389 499 aa23.54■■□□□ 1.36
CCDC88C-210ENST00000555995 XBP1P17861 261 aa23.54■■□□□ 1.36
CCDC88C-210ENST00000555995 NLRP5P59047 1200 aa23.54■■□□□ 1.36
CCDC88C-210ENST00000555995 JAKMIP3Q5VZ66 844 aa23.54■■□□□ 1.36
CCDC88C-210ENST00000555995 GALNT17Q6IS24 598 aa23.54■■□□□ 1.36
CCDC88C-210ENST00000555995 CAGE1Q8TC20 777 aa23.54■■□□□ 1.36
CCDC88C-210ENST00000555995 GPR20Q99678 358 aa23.54■■□□□ 1.36
CCDC88C-210ENST00000555995 MTIF3Q9H2K0 278 aaKnown RBP23.54■■□□□ 1.36
CCDC88C-210ENST00000555995 H3BRB1 525 aa23.53■■□□□ 1.36
CCDC88C-210ENST00000555995 SORBS3O60504 671 aa23.53■■□□□ 1.36
CCDC88C-210ENST00000555995 PFKMP08237 780 aa23.53■■□□□ 1.36
CCDC88C-210ENST00000555995 CYP3A4P08684 503 aa23.53■■□□□ 1.36
CCDC88C-210ENST00000555995 CYP2C18P33260 490 aa23.53■■□□□ 1.36
CCDC88C-210ENST00000555995 SETQ01105 290 aaPredicted RBP23.53■■□□□ 1.36
CCDC88C-210ENST00000555995 SCRN1Q12765 414 aa23.53■■□□□ 1.36
CCDC88C-210ENST00000555995 PTGISQ16647 500 aa23.53■■□□□ 1.36
CCDC88C-210ENST00000555995 C8orf34Q49A92 452 aa23.53■■□□□ 1.36
CCDC88C-210ENST00000555995 RPUSD2Q8IZ73 545 aaKnown RBP23.53■■□□□ 1.36
CCDC88C-210ENST00000555995 RETREG2Q8NC44 543 aa23.53■■□□□ 1.36
CCDC88C-210ENST00000555995 WASF1Q92558 559 aa23.53■■□□□ 1.36
CCDC88C-210ENST00000555995 PGBD1Q96JS3 809 aa23.53■■□□□ 1.36
CCDC88C-210ENST00000555995 RNPC3Q96LT9 517 aaKnown RBP23.53■■□□□ 1.36
CCDC88C-210ENST00000555995 SDF4Q9BRK5 362 aa23.53■■□□□ 1.36
CCDC88C-210ENST00000555995 ALG1Q9BT22 464 aa23.53■■□□□ 1.36
CCDC88C-210ENST00000555995 TUT1Q9H6E5 874 aaKnown RBP23.53■■□□□ 1.36
CCDC88C-210ENST00000555995 VPS54Q9P1Q0 977 aa23.53■■□□□ 1.36
CCDC88C-210ENST00000555995 TPCN1Q9ULQ1 816 aa23.53■■□□□ 1.36
CCDC88C-210ENST00000555995 NFASCO94856 1347 aa23.53■■□□□ 1.36
CCDC88C-210ENST00000555995 RFC2P35250 354 aa23.52■■□□□ 1.36
CCDC88C-210ENST00000555995 NEK4P51957 841 aa23.52■■□□□ 1.36
CCDC88C-210ENST00000555995 SHHQ15465 462 aa23.52■■□□□ 1.36
CCDC88C-210ENST00000555995 LARP6Q9BRS8 491 aaKnown RBP23.52■■□□□ 1.36
CCDC88C-210ENST00000555995 C16orf70Q9BSU1 422 aa23.52■■□□□ 1.36
CCDC88C-210ENST00000555995 IL23AQ9NPF7 189 aa23.52■■□□□ 1.36
CCDC88C-210ENST00000555995 KCNH7Q9NS40 1196 aa23.52■■□□□ 1.36
CCDC88C-210ENST00000555995 TMEM260Q9NX78 707 aa23.52■■□□□ 1.36
CCDC88C-210ENST00000555995 SEC24BO95487 1268 aa23.51■■□□□ 1.35
CCDC88C-210ENST00000555995 CYP2C9P11712 490 aa23.51■■□□□ 1.35
CCDC88C-210ENST00000555995 CSF2RAP15509 400 aa23.51■■□□□ 1.35
CCDC88C-210ENST00000555995 SEPT1Q8WYJ6 367 aa23.51■■□□□ 1.35
CCDC88C-210ENST00000555995 JPH1Q9HDC5 661 aaPredicted RBP23.51■■□□□ 1.35
CCDC88C-210ENST00000555995 PCDH10Q9P2E7 1040 aa23.51■■□□□ 1.35
CCDC88C-210ENST00000555995 HDAC6Q9UBN7 1215 aa23.51■■□□□ 1.35
CCDC88C-210ENST00000555995 MEIS1O00470 390 aa23.5■■□□□ 1.35
CCDC88C-210ENST00000555995 PARNO95453 639 aaKnown RBP23.5■■□□□ 1.35
CCDC88C-210ENST00000555995 GNAT1P11488 350 aa23.5■■□□□ 1.35
CCDC88C-210ENST00000555995 C9orf50Q5SZB4 431 aa23.5■■□□□ 1.35
CCDC88C-210ENST00000555995 GDF6Q6KF10 455 aaPredicted RBP23.5■■□□□ 1.35
CCDC88C-210ENST00000555995 DAGLBQ8NCG7 672 aa23.5■■□□□ 1.35
CCDC88C-210ENST00000555995 IL27Q8NEV9 243 aa23.5■■□□□ 1.35
CCDC88C-210ENST00000555995 AFAP1L1Q8TED9 768 aa23.5■■□□□ 1.35
CCDC88C-210ENST00000555995 UPF2Q9HAU5 1272 aaKnown RBP23.5■■□□□ 1.35
CCDC88C-210ENST00000555995 SLC9A2Q9UBY0 812 aa23.5■■□□□ 1.35
CCDC88C-210ENST00000555995 PCDHA4Q9UN74 947 aa23.5■■□□□ 1.35
CCDC88C-210ENST00000555995 ATP9AO75110 1047 aa23.49■■□□□ 1.35
CCDC88C-210ENST00000555995 PPFIA3O75145 1194 aa23.49■■□□□ 1.35
CCDC88C-210ENST00000555995 TCF7P36402 384 aaPredicted RBP23.49■■□□□ 1.35
CCDC88C-210ENST00000555995 CCL23P55773 120 aa23.49■■□□□ 1.35
CCDC88C-210ENST00000555995 SP4Q02446 784 aa23.49■■□□□ 1.35
CCDC88C-210ENST00000555995 RBL2Q08999 1139 aa23.49■■□□□ 1.35
CCDC88C-210ENST00000555995 PTK7Q13308 1070 aa23.49■■□□□ 1.35
CCDC88C-210ENST00000555995 CRYGNQ8WXF5 182 aa23.49■■□□□ 1.35
CCDC88C-210ENST00000555995 TNPO1Q92973 898 aaKnown RBP23.49■■□□□ 1.35
CCDC88C-210ENST00000555995 GTF3C6Q969F1 213 aa23.49■■□□□ 1.35
CCDC88C-210ENST00000555995 WNT8AQ9H1J5 351 aa23.49■■□□□ 1.35
CCDC88C-210ENST00000555995 TCEAL9Q9UHQ7 104 aa23.49■■□□□ 1.35
CCDC88C-210ENST00000555995 KAT6AQ92794 2004 aa23.49■■□□□ 1.35
CCDC88C-210ENST00000555995 C17orf102A2RUQ5 167 aa23.48■■□□□ 1.35
CCDC88C-210ENST00000555995 EPHB4P54760 987 aa23.48■■□□□ 1.35
CCDC88C-210ENST00000555995 PLA2G4DQ86XP0 818 aa23.48■■□□□ 1.35
CCDC88C-210ENST00000555995 BCAS3Q9H6U6 928 aa23.48■■□□□ 1.35
CCDC88C-210ENST00000555995 AGO4Q9HCK5 861 aaKnown RBP23.48■■□□□ 1.35
CCDC88C-210ENST00000555995 ERAP1Q9NZ08 941 aa23.48■■□□□ 1.35
CCDC88C-210ENST00000555995 PKD2L1Q9P0L9 805 aa23.48■■□□□ 1.35
CCDC88C-210ENST00000555995 UMODL1Q5DID0 1318 aa23.48■■□□□ 1.35
CCDC88C-210ENST00000555995 EMSYQ7Z589 1322 aa23.48■■□□□ 1.35
CCDC88C-210ENST00000555995 SOX1O00570 391 aaPredicted RBP23.47■■□□□ 1.35
CCDC88C-210ENST00000555995 SMAD3P84022 425 aaKnown RBP23.47■■□□□ 1.35
CCDC88C-210ENST00000555995 TMEM240Q5SV17 173 aa23.47■■□□□ 1.35
CCDC88C-210ENST00000555995 UTP14CQ5TAP6 766 aaKnown RBP23.47■■□□□ 1.35
CCDC88C-210ENST00000555995 BLIDQ8IZY5 108 aa23.47■■□□□ 1.35
CCDC88C-210ENST00000555995 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.47■■□□□ 1.35
CCDC88C-210ENST00000555995 SMARCAD1Q9H4L7 1026 aa23.47■■□□□ 1.35
CCDC88C-210ENST00000555995 AZI2Q9H6S1 392 aa23.47■■□□□ 1.35
CCDC88C-210ENST00000555995 SMIM10L2AP0DMW4 78 aa23.46■■□□□ 1.35
CCDC88C-210ENST00000555995 SMIM10L2BP0DMW5 78 aa23.46■■□□□ 1.35
CCDC88C-210ENST00000555995 HOXC8P31273 242 aa23.46■■□□□ 1.35
CCDC88C-210ENST00000555995 CIITAP33076 1130 aa23.46■■□□□ 1.35
CCDC88C-210ENST00000555995 USP11P51784 963 aa23.46■■□□□ 1.35
CCDC88C-210ENST00000555995 TRIP12Q14669 1992 aaPredicted RBP23.46■■□□□ 1.35
CCDC88C-210ENST00000555995 LRCH3Q96II8 777 aa23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms