RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 SP4Q02446 784 aa15.67■□□□□ 0.1
SHMT2-219ENST00000555563 FPGSQ05932 587 aa15.67■□□□□ 0.1
SHMT2-219ENST00000555563 MFSD10Q14728 455 aa15.67■□□□□ 0.1
SHMT2-219ENST00000555563 ME3Q16798 604 aa15.67■□□□□ 0.1
SHMT2-219ENST00000555563 NECAB1Q8N987 351 aa15.67■□□□□ 0.1
SHMT2-219ENST00000555563 CYP2W1Q8TAV3 490 aa15.67■□□□□ 0.1
SHMT2-219ENST00000555563 CRYGNQ8WXF5 182 aa15.67■□□□□ 0.1
SHMT2-219ENST00000555563 KIF2CQ99661 725 aa15.67■□□□□ 0.1
SHMT2-219ENST00000555563 GPR20Q99678 358 aa15.67■□□□□ 0.1
SHMT2-219ENST00000555563 MXRA8Q9BRK3 442 aa15.67■□□□□ 0.1
SHMT2-219ENST00000555563 KATNAL1Q9BW62 490 aa15.67■□□□□ 0.1
SHMT2-219ENST00000555563 HIPK3Q9H422 1215 aa15.67■□□□□ 0.1
SHMT2-219ENST00000555563 SH3GLB2Q9NR46 395 aa15.67■□□□□ 0.1
SHMT2-219ENST00000555563 TELO2Q9Y4R8 837 aa15.67■□□□□ 0.1
SHMT2-219ENST00000555563 HAS3O00219 553 aa15.66■□□□□ 0.1
SHMT2-219ENST00000555563 SOX1O00570 391 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-219ENST00000555563 CTDNEP1O95476 244 aa15.66■□□□□ 0.1
SHMT2-219ENST00000555563 LGALS2P05162 132 aa15.66■□□□□ 0.1
SHMT2-219ENST00000555563 EPHB4P54760 987 aa15.66■□□□□ 0.1
SHMT2-219ENST00000555563 NLRP5P59047 1200 aa15.66■□□□□ 0.1
SHMT2-219ENST00000555563 PTPN11Q06124 597 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-219ENST00000555563 KIAA0753Q2KHM9 967 aa15.66■□□□□ 0.1
SHMT2-219ENST00000555563 CEP55Q53EZ4 464 aa15.66■□□□□ 0.1
SHMT2-219ENST00000555563 MCTP2Q6DN12 878 aa15.66■□□□□ 0.1
SHMT2-219ENST00000555563 GIMAP8Q8ND71 665 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-219ENST00000555563 BICD2Q8TD16 824 aa15.66■□□□□ 0.1
SHMT2-219ENST00000555563 GTF3C6Q969F1 213 aa15.66■□□□□ 0.1
SHMT2-219ENST00000555563 LRCH3Q96II8 777 aa15.66■□□□□ 0.1
SHMT2-219ENST00000555563 C16orf70Q9BSU1 422 aa15.66■□□□□ 0.1
SHMT2-219ENST00000555563 ALG1Q9BT22 464 aa15.66■□□□□ 0.1
SHMT2-219ENST00000555563 NOC4LQ9BVI4 516 aaKnown RBP15.66■□□□□ 0.1
SHMT2-219ENST00000555563 C22orf23Q9BZE7 217 aa15.66■□□□□ 0.1
SHMT2-219ENST00000555563 UMODL1Q5DID0 1318 aa15.66■□□□□ 0.1
SHMT2-219ENST00000555563 TANC1Q9C0D5 1861 aa15.65■□□□□ 0.1
SHMT2-219ENST00000555563 SUPT20HL2P0C7V6 817 aa15.65■□□□□ 0.1
SHMT2-219ENST00000555563 CYP2C9P11712 490 aa15.65■□□□□ 0.1
SHMT2-219ENST00000555563 CYP2C18P33260 490 aa15.65■□□□□ 0.1
SHMT2-219ENST00000555563 C9orf50Q5SZB4 431 aa15.65■□□□□ 0.1
SHMT2-219ENST00000555563 MFSD5Q6N075 450 aa15.65■□□□□ 0.1
SHMT2-219ENST00000555563 SESTD1Q86VW0 696 aa15.65■□□□□ 0.1
SHMT2-219ENST00000555563 TRIM50Q86XT4 487 aa15.65■□□□□ 0.1
SHMT2-219ENST00000555563 KCNH7Q9NS40 1196 aa15.65■□□□□ 0.1
SHMT2-219ENST00000555563 HDAC6Q9UBN7 1215 aa15.65■□□□□ 0.1
SHMT2-219ENST00000555563 FAM86B1E9PN63 330 aa15.64■□□□□ 0.09
SHMT2-219ENST00000555563 MAFGO15525 162 aa15.64■□□□□ 0.09
SHMT2-219ENST00000555563 FAM86B2P0C5J1 330 aa15.64■□□□□ 0.09
SHMT2-219ENST00000555563 ARP10275 920 aa15.64■□□□□ 0.09
SHMT2-219ENST00000555563 CSF2RAP15509 400 aa15.64■□□□□ 0.09
SHMT2-219ENST00000555563 ZNF76P36508 570 aa15.64■□□□□ 0.09
SHMT2-219ENST00000555563 RBM25P49756 843 aaKnown RBP15.64■□□□□ 0.09
SHMT2-219ENST00000555563 ST3GAL1Q11201 340 aa15.64■□□□□ 0.09
SHMT2-219ENST00000555563 NPY5RQ15761 445 aa15.64■□□□□ 0.09
SHMT2-219ENST00000555563 GDF6Q6KF10 455 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-219ENST00000555563 C7orf31Q8N865 590 aa15.64■□□□□ 0.09
SHMT2-219ENST00000555563 CTAGE1Q96RT6 745 aa15.64■□□□□ 0.09
SHMT2-219ENST00000555563 WNT8AQ9H1J5 351 aa15.64■□□□□ 0.09
SHMT2-219ENST00000555563 JPH1Q9HDC5 661 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-219ENST00000555563 GTF2IRD1Q9UHL9 959 aa15.64■□□□□ 0.09
SHMT2-219ENST00000555563 PCDHA4Q9UN74 947 aa15.64■□□□□ 0.09
SHMT2-219ENST00000555563 COL6A3P12111 3177 aa15.63■□□□□ 0.09
SHMT2-219ENST00000555563 IGLV3-22A0A075B6J6 115 aa15.63■□□□□ 0.09
SHMT2-219ENST00000555563 H3BRB1 525 aa15.63■□□□□ 0.09
SHMT2-219ENST00000555563 MEIS1O00470 390 aa15.63■□□□□ 0.09
SHMT2-219ENST00000555563 CYP3A4P08684 503 aa15.63■□□□□ 0.09
SHMT2-219ENST00000555563 ITGB3BPQ13352 177 aaPredicted RBP15.63■□□□□ 0.09
SHMT2-219ENST00000555563 PPIGQ13427 754 aaKnown RBP eCLIP15.63■□□□□ 0.092e-10■□□□□ 10.2
SHMT2-219ENST00000555563 SHHQ15465 462 aa15.63■□□□□ 0.09
SHMT2-219ENST00000555563 PTGISQ16647 500 aa15.63■□□□□ 0.09
SHMT2-219ENST00000555563 UTP14CQ5TAP6 766 aaKnown RBP15.63■□□□□ 0.09
SHMT2-219ENST00000555563 NIPA1Q7RTP0 329 aa15.63■□□□□ 0.09
SHMT2-219ENST00000555563 FAM177A1Q8N128 213 aaPredicted RBP15.63■□□□□ 0.09
SHMT2-219ENST00000555563 TMEM199Q8N511 208 aa15.63■□□□□ 0.09
SHMT2-219ENST00000555563 DAGLBQ8NCG7 672 aa15.63■□□□□ 0.09
SHMT2-219ENST00000555563 TUT1Q9H6E5 874 aaKnown RBP15.63■□□□□ 0.09
SHMT2-219ENST00000555563 AGO4Q9HCK5 861 aaKnown RBP15.63■□□□□ 0.09
SHMT2-219ENST00000555563 ORC3Q9UBD5 711 aaPredicted RBP15.63■□□□□ 0.09
SHMT2-219ENST00000555563 NOD1Q9Y239 953 aa15.63■□□□□ 0.09
SHMT2-219ENST00000555563 NFASCO94856 1347 aa15.63■□□□□ 0.09
SHMT2-219ENST00000555563 TCF7P36402 384 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-219ENST00000555563 CCL23P55773 120 aa15.62■□□□□ 0.09
SHMT2-219ENST00000555563 LRIT3Q3SXY7 679 aa15.62■□□□□ 0.09
SHMT2-219ENST00000555563 GPR153Q6NV75 609 aa15.62■□□□□ 0.09
SHMT2-219ENST00000555563 PLA2G4DQ86XP0 818 aa15.62■□□□□ 0.09
SHMT2-219ENST00000555563 BLIDQ8IZY5 108 aa15.62■□□□□ 0.09
SHMT2-219ENST00000555563 NSUN7Q8NE18 718 aaKnown RBP15.62■□□□□ 0.09
SHMT2-219ENST00000555563 SDF4Q9BRK5 362 aa15.62■□□□□ 0.09
SHMT2-219ENST00000555563 GJB4Q9NTQ9 266 aa15.62■□□□□ 0.09
SHMT2-219ENST00000555563 ZNF215Q9UL58 517 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-219ENST00000555563 KCNJ14Q9UNX9 436 aa15.62■□□□□ 0.09
SHMT2-219ENST00000555563 LIMCH1Q9UPQ0 1083 aa15.62■□□□□ 0.09
SHMT2-219ENST00000555563 LAMA3Q16787 3333 aa15.62■□□□□ 0.09
SHMT2-219ENST00000555563 A0A0C4DFX4 3053 aa15.61■□□□□ 0.09
SHMT2-219ENST00000555563 GSTTP1A0A1W2PQM5 241 aa15.61■□□□□ 0.09
SHMT2-219ENST00000555563 M0R2N6 131 aa15.61■□□□□ 0.09
SHMT2-219ENST00000555563 JAK2O60674 1132 aa15.61■□□□□ 0.09
SHMT2-219ENST00000555563 SMIM10L2AP0DMW4 78 aa15.61■□□□□ 0.09
SHMT2-219ENST00000555563 SMIM10L2BP0DMW5 78 aa15.61■□□□□ 0.09
SHMT2-219ENST00000555563 FDPSP14324 419 aaKnown RBP15.61■□□□□ 0.09
SHMT2-219ENST00000555563 SETQ01105 290 aaPredicted RBP15.61■□□□□ 0.09
SHMT2-219ENST00000555563 HIC1Q14526 733 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms