RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 NOP56O00567 594 aaKnown RBP12.35□□□□□ -0.43
SHMT2-218ENST00000555213 DYNC1LI2O43237 492 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-218ENST00000555213 ADCY6O43306 1168 aa12.35□□□□□ -0.43
SHMT2-218ENST00000555213 EDIL3O43854 480 aa12.35□□□□□ -0.43
SHMT2-218ENST00000555213 TRAK2O60296 914 aa12.35□□□□□ -0.43
SHMT2-218ENST00000555213 CCNT1O60563 726 aaKnown RBP12.35□□□□□ -0.43
SHMT2-218ENST00000555213 ADAMTS4O75173 837 aa12.35□□□□□ -0.43
SHMT2-218ENST00000555213 ARIH2O95376 493 aa12.35□□□□□ -0.43
SHMT2-218ENST00000555213 GGPS1O95749 300 aa12.35□□□□□ -0.43
SHMT2-218ENST00000555213 FAM86B2P0C5J1 330 aa12.35□□□□□ -0.43
SHMT2-218ENST00000555213 CST5P28325 142 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-218ENST00000555213 TRAPPC10P48553 1259 aa12.35□□□□□ -0.43
SHMT2-218ENST00000555213 LY6KQ17RY6 165 aa12.35□□□□□ -0.43
SHMT2-218ENST00000555213 ATL3Q6DD88 541 aa12.35□□□□□ -0.43
SHMT2-218ENST00000555213 METTL7BQ6UX53 244 aa12.35□□□□□ -0.43
SHMT2-218ENST00000555213 LEO1Q8WVC0 666 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-218ENST00000555213 EMID1Q96A84 441 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-218ENST00000555213 PKD2L1Q9P0L9 805 aa12.35□□□□□ -0.43
SHMT2-218ENST00000555213 DDX25Q9UHL0 483 aaKnown RBP12.35□□□□□ -0.43
SHMT2-218ENST00000555213 MYH15Q9Y2K3 1946 aa12.35□□□□□ -0.43
SHMT2-218ENST00000555213 IGLV3-22A0A075B6J6 115 aa12.34□□□□□ -0.43
SHMT2-218ENST00000555213 CYP3A7-CYP3A51PA0A087WV96 503 aa12.34□□□□□ -0.43
SHMT2-218ENST00000555213 MOXD2PA6NHM9 499 aa12.34□□□□□ -0.43
SHMT2-218ENST00000555213 DDX11L8A8MPP1 907 aa12.34□□□□□ -0.43
SHMT2-218ENST00000555213 WNT7AO00755 349 aa12.34□□□□□ -0.43
SHMT2-218ENST00000555213 KPNA6O60684 536 aa12.34□□□□□ -0.43
SHMT2-218ENST00000555213 CYP3A7P24462 503 aa12.34□□□□□ -0.43
SHMT2-218ENST00000555213 NASPP49321 788 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-218ENST00000555213 KRT85P78386 507 aa12.34□□□□□ -0.43
SHMT2-218ENST00000555213 ARHGAP1Q07960 439 aa12.34□□□□□ -0.43
SHMT2-218ENST00000555213 PTPAQ15257 358 aa12.34□□□□□ -0.43
SHMT2-218ENST00000555213 LRRC41Q15345 812 aa12.34□□□□□ -0.43
SHMT2-218ENST00000555213 Q4G0T1 1027 aa12.34□□□□□ -0.43
SHMT2-218ENST00000555213 GNASQ5JWF2 1037 aa12.34□□□□□ -0.43
SHMT2-218ENST00000555213 CELF3Q5SZQ8 465 aaKnown RBP12.34□□□□□ -0.43
SHMT2-218ENST00000555213 GJC2Q5T442 439 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-218ENST00000555213 PPP4R3AQ6IN85 833 aa12.34□□□□□ -0.43
SHMT2-218ENST00000555213 PPTC7Q8NI37 304 aa12.34□□□□□ -0.43
SHMT2-218ENST00000555213 SPATA33Q96N06 139 aa12.34□□□□□ -0.43
SHMT2-218ENST00000555213 ZNF577Q9BSK1 485 aa12.34□□□□□ -0.43
SHMT2-218ENST00000555213 TSEN34Q9BSV6 310 aaKnown RBP12.34□□□□□ -0.43
SHMT2-218ENST00000555213 AGO4Q9HCK5 861 aaKnown RBP12.34□□□□□ -0.43
SHMT2-218ENST00000555213 JPH1Q9HDC5 661 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-218ENST00000555213 ELP1O95163 1332 aa12.34□□□□□ -0.43
SHMT2-218ENST00000555213 HTTP42858 3142 aa12.33□□□□□ -0.44
SHMT2-218ENST00000555213 KIAA1217Q5T5P2 1943 aa12.33□□□□□ -0.44
SHMT2-218ENST00000555213 KIAA0100Q14667 2235 aaKnown RBP12.33□□□□□ -0.44
SHMT2-218ENST00000555213 FRMPD3Q5JV73 1810 aa12.33□□□□□ -0.44
SHMT2-218ENST00000555213 IPO5O00410 1097 aaKnown RBP12.33□□□□□ -0.44
SHMT2-218ENST00000555213 MARCH6O60337 910 aa12.33□□□□□ -0.44
SHMT2-218ENST00000555213 TDP2O95551 362 aa12.33□□□□□ -0.44
SHMT2-218ENST00000555213 KCNA2P16389 499 aa12.33□□□□□ -0.44
SHMT2-218ENST00000555213 EN2P19622 333 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-218ENST00000555213 NKX3-2P78367 333 aa12.33□□□□□ -0.44
SHMT2-218ENST00000555213 SEMA3FQ13275 785 aa12.33□□□□□ -0.44
SHMT2-218ENST00000555213 ORC2Q13416 577 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-218ENST00000555213 DGKDQ16760 1214 aa12.33□□□□□ -0.44
SHMT2-218ENST00000555213 RILPL1Q5EBL4 403 aa12.33□□□□□ -0.44
SHMT2-218ENST00000555213 NECAB2Q7Z6G3 386 aa12.33□□□□□ -0.44
SHMT2-218ENST00000555213 LINC00301Q8NCQ3 95 aa12.33□□□□□ -0.44
SHMT2-218ENST00000555213 CYP2W1Q8TAV3 490 aa12.33□□□□□ -0.44
SHMT2-218ENST00000555213 AFG1LQ8WV93 481 aa12.33□□□□□ -0.44
SHMT2-218ENST00000555213 COPS5Q92905 334 aa12.33□□□□□ -0.44
SHMT2-218ENST00000555213 SCAND2PQ9GZW5 306 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-218ENST00000555213 C11orf49Q9H6J7 331 aa12.33□□□□□ -0.44
SHMT2-218ENST00000555213 TBC1D22BQ9NU19 505 aa12.33□□□□□ -0.44
SHMT2-218ENST00000555213 POLR3EQ9NVU0 708 aa12.33□□□□□ -0.44
SHMT2-218ENST00000555213 NFASCO94856 1347 aa12.33□□□□□ -0.44
SHMT2-218ENST00000555213 A6NJR5 290 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 SORBS3O60504 671 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 NEMFO60524 1076 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 GAS7O60861 476 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 CABYRO75952 493 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 MMP3P08254 477 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 ARP10275 920 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 ATP2B1P20020 1258 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 BEX3Q00994 111 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 SP2Q02086 613 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 SP4Q02446 784 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 CEBPZQ03701 1054 aaKnown RBP12.32□□□□□ -0.44
SHMT2-218ENST00000555213 SLC39A14Q15043 492 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 TTC38Q5R3I4 469 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 TMEM63BQ5T3F8 832 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 CYFIP1Q7L576 1253 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 KLHDC9Q8NEP7 349 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 LENG9Q96B70 501 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 GLT1D1Q96MS3 346 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 MBOAT7Q96N66 472 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 ZNF396Q96N95 335 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-218ENST00000555213 RIT2Q99578 217 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 ANP32EQ9BTT0 268 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 SLC9A2Q9UBY0 812 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 CFAP45Q9UL16 551 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 PHF24Q9UPV7 400 aa12.32□□□□□ -0.44
SHMT2-218ENST00000555213 MYADML2A6NDP7 307 aa12.31□□□□□ -0.44
SHMT2-218ENST00000555213 GOLGA6L22H0YM25 854 aa12.31□□□□□ -0.44
SHMT2-218ENST00000555213 TBX3O15119 743 aa12.31□□□□□ -0.44
SHMT2-218ENST00000555213 MSH4O15457 936 aa12.31□□□□□ -0.44
SHMT2-218ENST00000555213 SLC37A4O43826 429 aa12.31□□□□□ -0.44
SHMT2-218ENST00000555213 ASGR1P07306 291 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms