RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 HMGN5P82970 282 aaKnown RBP16.18■□□□□ 0.18
SHMT2-217ENST00000555116 TLE2Q04725 743 aa16.18■□□□□ 0.18
SHMT2-217ENST00000555116 ITGA7Q13683 1181 aa16.18■□□□□ 0.18
SHMT2-217ENST00000555116 DGKDQ16760 1214 aa16.18■□□□□ 0.18
SHMT2-217ENST00000555116 ANKRD33Q7Z3H0 272 aa16.18■□□□□ 0.18
SHMT2-217ENST00000555116 GIMAP8Q8ND71 665 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-217ENST00000555116 TELO2Q9Y4R8 837 aa16.18■□□□□ 0.18
SHMT2-217ENST00000555116 TRIP12Q14669 1992 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-217ENST00000555116 USP11P51784 963 aa16.18■□□□□ 0.18
SHMT2-217ENST00000555116 FOSBP53539 338 aa16.18■□□□□ 0.18
SHMT2-217ENST00000555116 KRT40Q6A162 431 aa16.18■□□□□ 0.18
SHMT2-217ENST00000555116 KRT25Q7Z3Z0 450 aa16.18■□□□□ 0.18
SHMT2-217ENST00000555116 TBCKQ8TEA7 893 aa16.18■□□□□ 0.18
SHMT2-217ENST00000555116 KAT2BQ92831 832 aa16.18■□□□□ 0.18
SHMT2-217ENST00000555116 AGO4Q9HCK5 861 aaKnown RBP16.18■□□□□ 0.18
SHMT2-217ENST00000555116 PKD2L1Q9P0L9 805 aa16.18■□□□□ 0.18
SHMT2-217ENST00000555116 LTBP2Q14767 1821 aa16.18■□□□□ 0.18
SHMT2-217ENST00000555116 PPFIA4O75335 1185 aa16.17■□□□□ 0.18
SHMT2-217ENST00000555116 MMP1P03956 469 aa16.17■□□□□ 0.18
SHMT2-217ENST00000555116 PLA2G4DQ86XP0 818 aa16.17■□□□□ 0.18
SHMT2-217ENST00000555116 TNFRSF25Q93038 417 aa16.17■□□□□ 0.18
SHMT2-217ENST00000555116 TOX2Q96NM4 488 aa16.17■□□□□ 0.18
SHMT2-217ENST00000555116 GPR20Q99678 358 aa16.17■□□□□ 0.18
SHMT2-217ENST00000555116 ZMYND8Q9ULU4 1186 aaPredicted RBP16.17■□□□□ 0.18
SHMT2-217ENST00000555116 KAT6AQ92794 2004 aa16.17■□□□□ 0.18
SHMT2-217ENST00000555116 PQBP1O60828 265 aaKnown RBP16.16■□□□□ 0.18
SHMT2-217ENST00000555116 ITGB3BPQ13352 177 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-217ENST00000555116 NONOQ15233 471 aaKnown RBP eCLIP16.16■□□□□ 0.18
SHMT2-217ENST00000555116 PRPF38BQ5VTL8 546 aaKnown RBP16.16■□□□□ 0.18
SHMT2-217ENST00000555116 LENG9Q96B70 501 aa16.16■□□□□ 0.18
SHMT2-217ENST00000555116 NFASCO94856 1347 aa16.16■□□□□ 0.18
SHMT2-217ENST00000555116 ZNF286BP0CG31 522 aa16.16■□□□□ 0.18
SHMT2-217ENST00000555116 KRT2P35908 639 aa16.16■□□□□ 0.18
SHMT2-217ENST00000555116 NR5A1Q13285 461 aa16.16■□□□□ 0.18
SHMT2-217ENST00000555116 INF2Q27J81 1249 aa16.16■□□□□ 0.18
SHMT2-217ENST00000555116 NBPF20Q3BBV1 942 aa16.16■□□□□ 0.18
SHMT2-217ENST00000555116 EARS2Q5JPH6 523 aaKnown RBP16.16■□□□□ 0.18
SHMT2-217ENST00000555116 FAM126BQ8IXS8 530 aa16.16■□□□□ 0.18
SHMT2-217ENST00000555116 SEZ6LQ9BYH1 1024 aa16.16■□□□□ 0.18
SHMT2-217ENST00000555116 PDLIM7Q9NR12 457 aa16.16■□□□□ 0.18
SHMT2-217ENST00000555116 MROH7Q68CQ1 1323 aa16.16■□□□□ 0.18
SHMT2-217ENST00000555116 CCDC194A0A1B0GVG4 234 aa16.15■□□□□ 0.18
SHMT2-217ENST00000555116 HAS3O00219 553 aa16.15■□□□□ 0.18
SHMT2-217ENST00000555116 NOP56O00567 594 aaKnown RBP16.15■□□□□ 0.18
SHMT2-217ENST00000555116 F2P00734 622 aa16.15■□□□□ 0.18
SHMT2-217ENST00000555116 SYN1P17600 705 aa16.15■□□□□ 0.18
SHMT2-217ENST00000555116 SETQ01105 290 aaPredicted RBP16.15■□□□□ 0.18
SHMT2-217ENST00000555116 SP4Q02446 784 aa16.15■□□□□ 0.18
SHMT2-217ENST00000555116 FAAP100Q0VG06 881 aa16.15■□□□□ 0.18
SHMT2-217ENST00000555116 TRIM29Q14134 588 aa16.15■□□□□ 0.18
SHMT2-217ENST00000555116 PRR16Q569H4 304 aa16.15■□□□□ 0.18
SHMT2-217ENST00000555116 PPP1R13LQ8WUF5 828 aa16.15■□□□□ 0.18
SHMT2-217ENST00000555116 C8orf76Q96K31 380 aa16.15■□□□□ 0.18
SHMT2-217ENST00000555116 MBOAT7Q96N66 472 aa16.15■□□□□ 0.18
SHMT2-217ENST00000555116 C16orf70Q9BSU1 422 aa16.15■□□□□ 0.18
SHMT2-217ENST00000555116 MYH9P35579 1960 aaKnown RBP16.15■□□□□ 0.18
SHMT2-217ENST00000555116 CYP3A7-CYP3A51PA0A087WV96 503 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 GSTTP1A0A1W2PQM5 241 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 DCDC2CA8MYV0 355 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 DHX15O43143 795 aaKnown RBP16.14■□□□□ 0.17
SHMT2-217ENST00000555116 CD4P01730 458 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 LGALS2P05162 132 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 CYP3A7P24462 503 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 PSEN2P49810 448 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 GUCY1B3Q02153 619 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 SH3RF1Q7Z6J0 888 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 DIS3L2Q8IYB7 885 aaKnown RBP16.14■□□□□ 0.17
SHMT2-217ENST00000555116 FAM184AQ8NB25 1140 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 BRMS1Q9HCU9 246 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 JPH1Q9HDC5 661 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-217ENST00000555116 PCDH10Q9P2E7 1040 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 FAM205CA6NFA0 338 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 BTBD18B2RXH4 712 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 TDP2O95551 362 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 CLTBP09497 229 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 NFRKBQ6P4R8 1299 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 MOXD1Q6UVY6 613 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 PIK3AP1Q6ZUJ8 805 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 UIMC1Q96RL1 719 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 SDF4Q9BRK5 362 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 SLC9A2Q9UBY0 812 aa16.14■□□□□ 0.17
SHMT2-217ENST00000555116 TRIM43BA6NCK2 446 aa16.13■□□□□ 0.17
SHMT2-217ENST00000555116 IPO5O00410 1097 aaKnown RBP16.13■□□□□ 0.17
SHMT2-217ENST00000555116 KIAA0355O15063 1070 aa16.13■□□□□ 0.17
SHMT2-217ENST00000555116 BECN1Q14457 450 aa16.13■□□□□ 0.17
SHMT2-217ENST00000555116 MFSD10Q14728 455 aa16.13■□□□□ 0.17
SHMT2-217ENST00000555116 Q4G0T1 1027 aa16.13■□□□□ 0.17
SHMT2-217ENST00000555116 FBXO18Q8NFZ0 1043 aa16.13■□□□□ 0.17
SHMT2-217ENST00000555116 SEPT1Q8WYJ6 367 aa16.13■□□□□ 0.17
SHMT2-217ENST00000555116 TRIM43Q96BQ3 446 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-217ENST00000555116 TBX21Q9UL17 535 aa16.13■□□□□ 0.17
SHMT2-217ENST00000555116 TCF7P36402 384 aaPredicted RBP16.12■□□□□ 0.17
SHMT2-217ENST00000555116 PTPN11Q06124 597 aaPredicted RBP16.12■□□□□ 0.17
SHMT2-217ENST00000555116 CUL4AQ13619 759 aa16.12■□□□□ 0.17
SHMT2-217ENST00000555116 KIAA0753Q2KHM9 967 aa16.12■□□□□ 0.17
SHMT2-217ENST00000555116 NEK8Q86SG6 692 aa16.12■□□□□ 0.17
SHMT2-217ENST00000555116 SESTD1Q86VW0 696 aa16.12■□□□□ 0.17
SHMT2-217ENST00000555116 ZNF577Q9BSK1 485 aa16.12■□□□□ 0.17
SHMT2-217ENST00000555116 KATNAL1Q9BW62 490 aa16.12■□□□□ 0.17
SHMT2-217ENST00000555116 TRPV6Q9H1D0 765 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms